CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58547597|58547834
Strand +
CircType exon
Host Gene ENSG00000130726.10;
Algorism CIRI2;
Sequence ATCCACTTGCACACGCTTCTGTACGTCAGACACCTGGCGGATTCTAGGGGACACAGCAGGTCAGGCTAGGTAGGGTCTTGCTGCCCTGGGCCACCCCCACAGCCCCAGAACCCACACTTACGAGCTGCGAACCTCCTTGGTGCTCTTCTGCAATGTTGCATGTTTGTCCCCAAGGCGCTTCACCAGTGAGGCCAGGAGCTTGCGCTGGTTCCTCACTGCATCCTCTAAGAACTGGTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58547597|58547834 hsa-miR-19a-5p 0 0 1
chr19:58547597|58547834 hsa-miR-19a-3p 0 0 1
chr19:58547597|58547834 hsa-miR-29a-5p 0 0 1
chr19:58547597|58547834 hsa-miR-29a-3p 0 0 1
chr19:58547597|58547834 hsa-miR-29c-5p 0 0 1
chr19:58547597|58547834 hsa-miR-29c-3p 0 0 1
chr19:58547597|58547834 hsa-miR-370-5p 0 0 1
chr19:58547597|58547834 hsa-miR-370-3p 0 0 1
chr19:58547597|58547834 hsa-miR-595 0 0 1
chr19:58547597|58547834 hsa-miR-596 0 0 1
chr19:58547597|58547834 hsa-miR-608 1 1 1
chr19:58547597|58547834 hsa-miR-631 0 0 1
chr19:58547597|58547834 hsa-miR-637 0 0 1
chr19:58547597|58547834 hsa-miR-298 1 1 1
chr19:58547597|58547834 hsa-miR-877-5p 0 0 1
chr19:58547597|58547834 hsa-miR-877-3p 0 0 1
chr19:58547597|58547834 hsa-miR-663b 0 0 1
chr19:58547597|58547834 hsa-miR-491-5p 0 0 1
chr19:58547597|58547834 hsa-miR-19b 0 0 1
chr19:58547597|58547834 hsa-miR-29b 0 0 1
chr19:58547597|58547834 hsa-miR-107 0 1 0
chr19:58547597|58547834 hsa-miR-638 1 0 0
chr19:58547597|58547834 hsa-miR-762 1 0 0
chr19:58547597|58547834 hsa-miR-760 1 1 0
chr19:58547597|58547834 hsa-miR-1202 1 0 0
chr19:58547597|58547834 hsa-miR-1538 1 0 0
chr19:58547597|58547834 hsa-miR-4322 1 0 0
chr19:58547597|58547834 hsa-miR-3909 0 1 0
chr19:58547597|58547834 hsa-miR-4507 1 0 0
chr19:58547597|58547834 hsa-miR-4651 0 1 0
chr19:58547597|58547834 hsa-miR-4654 1 0 0
chr19:58547597|58547834 hsa-miR-4656 1 0 0
chr19:58547597|58547834 hsa-miR-4658 1 1 0
chr19:58547597|58547834 hsa-miR-4706 1 0 0
chr19:58547597|58547834 hsa-miR-4739 1 0 0
chr19:58547597|58547834 hsa-miR-4741 1 1 0
chr19:58547597|58547834 hsa-miR-6081 1 0 0
chr19:58547597|58547834 hsa-miR-6085 1 0 0
chr19:58547597|58547834 hsa-miR-7706 0 1 0
chr19:58547597|58547834 hsa-miR-8089 1 0 0
chr19:58547597|58547834 hsa-miR-12115 1 0 0
chr19:58547597|58547834 hsa-miR-12118 0 1 0
chr19:58547597|58547834 hsa-miR-6894-5p 1 1 0
chr19:58547597|58547834 hsa-miR-6799-5p 1 0 0
chr19:58547597|58547834 hsa-miR-3934-5p 1 1 0
chr19:58547597|58547834 hsa-miR-3663-3p 0 1 0
chr19:58547597|58547834 hsa-miR-24-3p 0 1 0
chr19:58547597|58547834 hsa-miR-3928-3p 0 1 0
chr19:58547597|58547834 hsa-miR-6759-5p 1 0 0
chr19:58547597|58547834 hsa-let-7i-3p 0 1 0
chr19:58547597|58547834 hsa-miR-3605-5p 0 1 0
chr19:58547597|58547834 hsa-miR-6793-5p 1 1 0
chr19:58547597|58547834 hsa-miR-6796-5p 0 1 0
chr19:58547597|58547834 hsa-miR-6732-5p 1 0 0
chr19:58547597|58547834 hsa-miR-23a-5p 1 0 0
chr19:58547597|58547834 hsa-miR-6782-5p 1 0 0
chr19:58547597|58547834 hsa-miR-6810-5p 1 1 0
chr19:58547597|58547834 hsa-miR-4787-5p 1 0 0
chr19:58547597|58547834 hsa-miR-103a-3p 0 1 0
chr19:58547597|58547834 hsa-miR-450a-2-3p 0 1 0
chr19:58547597|58547834 hsa-miR-3190-5p 1 0 0
chr19:58547597|58547834 hsa-miR-4732-3p 0 1 0
chr19:58547597|58547834 hsa-miR-339-3p 0 1 0
chr19:58547597|58547834 hsa-miR-5197-3p 0 1 0
chr19:58547597|58547834 hsa-miR-4738-5p 0 1 0
chr19:58547597|58547834 hsa-miR-6752-5p 1 1 0
chr19:58547597|58547834 hsa-miR-6803-5p 1 1 0
chr19:58547597|58547834 hsa-miR-6813-5p 1 0 0
chr19:58547597|58547834 hsa-miR-6842-5p 1 1 0
chr19:58547597|58547834 hsa-miR-10401-5p 1 0 0
chr19:58547597|58547834 hsa-miR-1915-3p 0 1 0
chr19:58547597|58547834 hsa-miR-328-5p 1 0 0
chr19:58547597|58547834 hsa-miR-4632-5p 0 1 0
chr19:58547597|58547834 hsa-miR-4745-5p 1 0 0
chr19:58547597|58547834 hsa-miR-6735-5p 0 1 0
chr19:58547597|58547834 hsa-miR-6848-5p 1 0 0
chr19:58547597|58547834 hsa-miR-4436b-3p 0 1 0
chr19:58547597|58547834 hsa-miR-4758-5p 1 0 0
chr19:58547597|58547834 hsa-miR-3940-5p 1 0 0
chr19:58547597|58547834 hsa-miR-7843-5p 0 1 0
chr19:58547597|58547834 hsa-miR-6855-5p 1 0 0
chr19:58547597|58547834 hsa-miR-6790-5p 1 1 0
chr19:58547597|58547834 hsa-miR-6893-3p 0 1 0
chr19:58547597|58547834 hsa-miR-6837-5p 0 1 0
chr19:58547597|58547834 hsa-miR-99b-3p 1 1 0
chr19:58547597|58547834 hsa-miR-5195-3p 1 0 0
chr19:58547597|58547834 hsa-miR-3914 0 1 0
chr19:58547597|58547834 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:58547597|58547834
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MGHPHSPRTHTYELRTSLVLFCNVACLSPRRFTSEARSLRWFLTASSKNWY
Nucleotide Sequence CTGGGCCACCCCCACAGCCCCAGAACCCACACTTACGAGCTGCGAACCTCCTTGGTGCTCTTCTGCAATGTTGCATGTTTGTCCCCAAGGCGCTTCACCAGTGAGGCCAGGAGCTTGCGCTGGTTCCTCACTGCATCCTCTAAGAACTGGTAC
CircID chr19:58547597|58547834
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MLPWATPTAPEPTLTSCEPPWCSSAMLHVCPQGASPVRPGACAGSSLHPLRTG
Nucleotide Sequence TTGCTGCCCTGGGCCACCCCCACAGCCCCAGAACCCACACTTACGAGCTGCGAACCTCCTTGGTGCTCTTCTGCAATGTTGCATGTTTGTCCCCAAGGCGCTTCACCAGTGAGGCCAGGAGCTTGCGCTGGTTCCTCACTGCATCCTCTAAGAACTGGT
CircID chr19:58547597|58547834
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MASLVKRLGDKHATLQKSTKEVRSS
Nucleotide Sequence CTGGCCTCACTGGTGAAGCGCCTTGGGGACAAACATGCAACATTGCAGAAGAGCACCAAGGAGGTTCGCAGCTCGTAA
CircID chr19:58547597|58547834
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MGTNMQHCRRAPRRFAARKCGFWGCGGGPGQQDPT
Nucleotide Sequence TTGGGGACAAACATGCAACATTGCAGAAGAGCACCAAGGAGGTTCGCAGCTCGTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab