CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58548081|58548374
Strand -
CircType exon
Host Gene ENSG00000130726.10;
Algorism CIRI2;
Sequence CATGACCAAGATCCAGAAGCACCAGGAGCACATTCTGCGCTTTGCCTCTTGGGCTCTGGAGAGTGACAACAACACAGCCCTTTTGCTTTCTAAGAAGTTGGTGTGTACTGGTGGGCTCCTGGCTGGTGGGTTCCAGGCAGGTGGTTCCCAATACCTCAAATCCCTATTTGTTGTTGGTGTGCTCATTCTTTCCTCCCTTTCACTCCCAACCAGATCTACTTCCAGCTGCACCGGGCCCTCAAGATGATTGTGGATCCCGTGGAGCCACATGGCGAGATGAAGTTTCAGTGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58548081|58548374 hsa-let-7b-5p 0 0 1
chr19:58548081|58548374 hsa-let-7b-3p 0 0 1
chr19:58548081|58548374 hsa-let-7c-5p 0 0 1
chr19:58548081|58548374 hsa-let-7c-3p 0 0 1
chr19:58548081|58548374 hsa-let-7d-5p 0 0 1
chr19:58548081|58548374 hsa-let-7d-3p 0 0 1
chr19:58548081|58548374 hsa-let-7e-5p 0 0 1
chr19:58548081|58548374 hsa-let-7e-3p 0 0 1
chr19:58548081|58548374 hsa-miR-98-5p 0 0 1
chr19:58548081|58548374 hsa-miR-98-3p 0 0 1
chr19:58548081|58548374 hsa-let-7g-5p 0 0 1
chr19:58548081|58548374 hsa-let-7g-3p 0 0 1
chr19:58548081|58548374 hsa-let-7i-5p 0 0 1
chr19:58548081|58548374 hsa-let-7i-3p 0 0 1
chr19:58548081|58548374 hsa-miR-186-5p 0 0 1
chr19:58548081|58548374 hsa-miR-186-3p 0 0 1
chr19:58548081|58548374 hsa-miR-488-5p 0 0 1
chr19:58548081|58548374 hsa-miR-488-3p 0 0 1
chr19:58548081|58548374 hsa-miR-202-5p 0 0 1
chr19:58548081|58548374 hsa-miR-202-3p 0 0 1
chr19:58548081|58548374 hsa-miR-526b-5p 0 0 1
chr19:58548081|58548374 hsa-miR-526b-3p 0 0 1
chr19:58548081|58548374 hsa-miR-518f-5p 0 0 1
chr19:58548081|58548374 hsa-miR-518f-3p 0 0 1
chr19:58548081|58548374 hsa-miR-518b 0 0 1
chr19:58548081|58548374 hsa-miR-518c-5p 0 0 1
chr19:58548081|58548374 hsa-miR-518c-3p 0 0 1
chr19:58548081|58548374 hsa-miR-603 0 0 1
chr19:58548081|58548374 hsa-miR-661 0 0 1
chr19:58548081|58548374 hsa-miR-668-5p 0 0 1
chr19:58548081|58548374 hsa-miR-668-3p 0 0 1
chr19:58548081|58548374 hsa-miR-1301-5p 0 0 1
chr19:58548081|58548374 hsa-miR-1301-3p 0 0 1
chr19:58548081|58548374 hsa-miR-766-5p 0 0 1
chr19:58548081|58548374 hsa-miR-766-3p 0 0 1
chr19:58548081|58548374 hsa-miR-665 0 1 1
chr19:58548081|58548374 hsa-miR-1226-5p 0 0 1
chr19:58548081|58548374 hsa-miR-1226-3p 0 0 1
chr19:58548081|58548374 hsa-miR-1299 0 0 1
chr19:58548081|58548374 hsa-miR-1304-5p 0 0 1
chr19:58548081|58548374 hsa-miR-1304-3p 0 0 1
chr19:58548081|58548374 hsa-miR-548p 0 0 1
chr19:58548081|58548374 hsa-miR-1292-5p 0 0 1
chr19:58548081|58548374 hsa-miR-1292-3p 0 0 1
chr19:58548081|58548374 hsa-miR-1321 0 1 1
chr19:58548081|58548374 hsa-miR-770-5p 0 0 1
chr19:58548081|58548374 hsa-miR-525-5p 0 0 1
chr19:58548081|58548374 hsa-miR-1207-3p 0 0 1
chr19:58548081|58548374 hsa-miR-520a-5p 0 0 1
chr19:58548081|58548374 hsa-miR-518a-3p 0 0 1
chr19:58548081|58548374 hsa-miR-518d-3p 0 0 1
chr19:58548081|58548374 hsa-miR-362-3p 0 0 1
chr19:58548081|58548374 hsa-let-7a 0 0 1
chr19:58548081|58548374 hsa-let-7f 0 0 1
chr19:58548081|58548374 hsa-miR-516b 0 0 1
chr19:58548081|58548374 hsa-miR-1254 0 0 1
chr19:58548081|58548374 hsa-miR-329 0 0 1
chr19:58548081|58548374 hsa-miR-762 1 0 0
chr19:58548081|58548374 hsa-miR-1538 1 1 0
chr19:58548081|58548374 hsa-miR-3147 1 0 0
chr19:58548081|58548374 hsa-miR-3154 1 0 0
chr19:58548081|58548374 hsa-miR-1268b 1 0 0
chr19:58548081|58548374 hsa-miR-4450 0 1 0
chr19:58548081|58548374 hsa-miR-3978 1 0 0
chr19:58548081|58548374 hsa-miR-4674 1 0 0
chr19:58548081|58548374 hsa-miR-4675 0 1 0
chr19:58548081|58548374 hsa-miR-4688 1 0 0
chr19:58548081|58548374 hsa-miR-4721 1 0 0
chr19:58548081|58548374 hsa-miR-4739 1 1 0
chr19:58548081|58548374 hsa-miR-4741 1 0 0
chr19:58548081|58548374 hsa-miR-4751 1 0 0
chr19:58548081|58548374 hsa-miR-5681a 1 0 0
chr19:58548081|58548374 hsa-miR-6090 1 0 0
chr19:58548081|58548374 hsa-miR-6133 1 0 0
chr19:58548081|58548374 hsa-miR-6745 1 0 0
chr19:58548081|58548374 hsa-miR-7974 1 1 0
chr19:58548081|58548374 hsa-miR-12119 1 0 0
chr19:58548081|58548374 hsa-miR-135a-3p 1 1 0
chr19:58548081|58548374 hsa-miR-504-3p 1 0 0
chr19:58548081|58548374 hsa-miR-7106-5p 1 1 0
chr19:58548081|58548374 hsa-miR-6825-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6894-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6833-5p 1 0 0
chr19:58548081|58548374 hsa-miR-1236-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6757-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6730-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6776-5p 1 0 0
chr19:58548081|58548374 hsa-miR-432-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6871-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6732-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6827-5p 1 0 0
chr19:58548081|58548374 hsa-miR-3156-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6874-5p 1 0 0
chr19:58548081|58548374 hsa-miR-615-5p 1 0 0
chr19:58548081|58548374 hsa-miR-5088-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6740-5p 1 0 0
chr19:58548081|58548374 hsa-miR-4640-5p 1 0 0
chr19:58548081|58548374 hsa-miR-4713-3p 0 1 0
chr19:58548081|58548374 hsa-miR-6749-5p 1 0 0
chr19:58548081|58548374 hsa-miR-3202 1 0 0
chr19:58548081|58548374 hsa-miR-4787-5p 1 0 0
chr19:58548081|58548374 hsa-miR-149-3p 1 0 0
chr19:58548081|58548374 hsa-miR-6824-5p 1 0 0
chr19:58548081|58548374 hsa-miR-3162-5p 1 1 0
chr19:58548081|58548374 hsa-miR-7160-3p 0 1 0
chr19:58548081|58548374 hsa-miR-6804-3p 0 1 0
chr19:58548081|58548374 hsa-miR-1180-5p 0 1 0
chr19:58548081|58548374 hsa-miR-6794-3p 0 1 0
chr19:58548081|58548374 hsa-miR-1207-5p 1 0 0
chr19:58548081|58548374 hsa-miR-1233-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6778-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6812-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6870-5p 1 0 0
chr19:58548081|58548374 hsa-miR-5001-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6752-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6803-5p 1 0 0
chr19:58548081|58548374 hsa-miR-7107-5p 1 0 0
chr19:58548081|58548374 hsa-miR-7110-5p 1 0 0
chr19:58548081|58548374 hsa-miR-1249-5p 1 1 0
chr19:58548081|58548374 hsa-miR-6751-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6763-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6797-5p 1 1 0
chr19:58548081|58548374 hsa-miR-4728-5p 1 1 0
chr19:58548081|58548374 hsa-miR-5196-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6836-5p 1 0 0
chr19:58548081|58548374 hsa-miR-10526-3p 1 0 0
chr19:58548081|58548374 hsa-miR-328-5p 1 0 0
chr19:58548081|58548374 hsa-miR-4685-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6795-5p 1 1 0
chr19:58548081|58548374 hsa-miR-6887-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6831-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6758-5p 1 0 0
chr19:58548081|58548374 hsa-miR-1199-5p 1 0 0
chr19:58548081|58548374 hsa-miR-1914-3p 1 0 0
chr19:58548081|58548374 hsa-miR-6855-5p 1 0 0
chr19:58548081|58548374 hsa-miR-3116 0 1 0
chr19:58548081|58548374 hsa-miR-3173-3p 1 0 0
chr19:58548081|58548374 hsa-miR-6849-5p 1 0 0
chr19:58548081|58548374 hsa-miR-6724-5p 1 0 0
chr19:58548081|58548374 hsa-miR-450a-1-3p 0 1 0
chr19:58548081|58548374 hsa-miR-4712-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:58548081|58548374
ORF Type ORF1
Protein Length 81
Nucleotide Length 246
Protein Sequence MTKIQKHQEHILRFASWALESDNNTALLLSKKLVCTGGLLAGGFQAGGSQYLKSLFVVGVLILSSLSLPTRSTSSCTGPSR
Nucleotide Sequence ATGACCAAGATCCAGAAGCACCAGGAGCACATTCTGCGCTTTGCCTCTTGGGCTCTGGAGAGTGACAACAACACAGCCCTTTTGCTTTCTAAGAAGTTGGTGTGTACTGGTGGGCTCCTGGCTGGTGGGTTCCAGGCAGGTGGTTCCCAATACCTCAAATCCCTATTTGTTGTTGGTGTGCTCATTCTTTCCTCCCTTTCACTCCCAACCAGATCTACTTCCAGCTGCACCGGGCCCTCAAGATGA
CircID chr19:58548081|58548374
ORF Type ORF2
Protein Length 84
Nucleotide Length 252
Protein Sequence MPLGLWRVTTTQPFCFLRSWCVLVGSWLVGSRQVVPNTSNPYLLLVCSFFPPFHSQPDLLPAAPGPQDDCGSRGATWRDEVSVG
Nucleotide Sequence TTGCCTCTTGGGCTCTGGAGAGTGACAACAACACAGCCCTTTTGCTTTCTAAGAAGTTGGTGTGTACTGGTGGGCTCCTGGCTGGTGGGTTCCAGGCAGGTGGTTCCCAATACCTCAAATCCCTATTTGTTGTTGGTGTGCTCATTCTTTCCTCCCTTTCACTCCCAACCAGATCTACTTCCAGCTGCACCGGGCCCTCAAGATGATTGTGGATCCCGTGGAGCCACATGGCGAGATGAAGTTTCAGTGGGA
CircID chr19:58548081|58548374
ORF Type ORF3
Protein Length 96
Nucleotide Length 288
Protein Sequence MKLHLAMWLHGIHNHLEGPVQLEVDLVGSEREERMSTPTTNRDLRYWEPPAWNPPARSPPVHTNFLESKRAVLLSLSRAQEAKRRMCSWCFWILVM
Nucleotide Sequence CTGAAACTTCATCTCGCCATGTGGCTCCACGGGATCCACAATCATCTTGAGGGCCCGGTGCAGCTGGAAGTAGATCTGGTTGGGAGTGAAAGGGAGGAAAGAATGAGCACACCAACAACAAATAGGGATTTGAGGTATTGGGAACCACCTGCCTGGAACCCACCAGCCAGGAGCCCACCAGTACACACCAACTTCTTAGAAAGCAAAAGGGCTGTGTTGTTGTCACTCTCCAGAGCCCAAGAGGCAAAGCGCAGAATGTGCTCCTGGTGCTTCTGGATCTTGGTCATG
CircID chr19:58548081|58548374
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MCCCHSPEPKRQSAECAPGASGSWS
Nucleotide Sequence CTGTGTTGTTGTCACTCTCCAGAGCCCAAGAGGCAAAGCGCAGAATGTGCTCCTGGTGCTTCTGGATCTTGGTCA
CircID chr19:58548081|58548374
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MGTTCLEPTSQEPTSTHQLLRKQKGCVVVTLQSPRGKAQNVLLVLLDLGH
Nucleotide Sequence TTGGGAACCACCTGCCTGGAACCCACCAGCCAGGAGCCCACCAGTACACACCAACTTCTTAGAAAGCAAAAGGGCTGTGTTGTTGTCACTCTCCAGAGCCCAAGAGGCAAAGCGCAGAATGTGCTCCTGGTGCTTCTGGATCTTGGTCAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab