CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58548345|58548592
Strand +
CircType exon
Host Gene ENSG00000130726.10;
Algorism CIRI2;
Sequence CTGGCTGCTGCCAGAGCCCTGCTTGCTCAGGGGCCCTGGGGCTCTTGGAGGGGCCATGGGTGCAGGGCCTGTTGAGTTAGTGCCAGGACGCTCTGCCACAATCTTGCCTGCAAAAAGAAGAGAGAAACGTAAGTAGGTGCAGCACGTGGGGTAATAACAGAGTGAGGTAAAGCTGGGGACCCACCAAAGGCCTCGGCACTCTTGGTCCAGGCATTGAGGTCCCACTGAAACTTCATCTCGCCATGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58548345|58548592 hsa-miR-31-5p 0 0 1
chr19:58548345|58548592 hsa-miR-31-3p 0 0 1
chr19:58548345|58548592 hsa-miR-143-5p 0 0 1
chr19:58548345|58548592 hsa-miR-143-3p 0 0 1
chr19:58548345|58548592 hsa-miR-335-5p 0 0 1
chr19:58548345|58548592 hsa-miR-335-3p 0 0 1
chr19:58548345|58548592 hsa-miR-507 0 0 1
chr19:58548345|58548592 hsa-miR-557 0 0 1
chr19:58548345|58548592 hsa-miR-661 0 0 1
chr19:58548345|58548592 hsa-miR-662 0 1 1
chr19:58548345|58548592 hsa-miR-421 0 0 1
chr19:58548345|58548592 hsa-miR-541-5p 0 0 1
chr19:58548345|58548592 hsa-miR-541-3p 0 0 1
chr19:58548345|58548592 hsa-miR-760 0 1 1
chr19:58548345|58548592 hsa-miR-1236-5p 0 0 1
chr19:58548345|58548592 hsa-miR-1236-3p 0 0 1
chr19:58548345|58548592 hsa-miR-1291 0 1 1
chr19:58548345|58548592 hsa-miR-129-5p 0 1 1
chr19:58548345|58548592 hsa-miR-1225-3p 0 1 1
chr19:58548345|58548592 hsa-miR-296-5p 0 0 1
chr19:58548345|58548592 hsa-miR-885-3p 0 0 1
chr19:58548345|58548592 hsa-miR-654-5p 0 0 1
chr19:58548345|58548592 hsa-miR-125a-5p 0 0 1
chr19:58548345|58548592 hsa-miR-450b-5p 0 0 1
chr19:58548345|58548592 hsa-miR-556-3p 0 0 1
chr19:58548345|58548592 hsa-miR-125b 0 0 1
chr19:58548345|58548592 hsa-miR-9 0 0 1
chr19:58548345|58548592 hsa-miR-1254 0 0 1
chr19:58548345|58548592 hsa-miR-371-3p 0 0 1
chr19:58548345|58548592 hsa-miR-665 1 1 0
chr19:58548345|58548592 hsa-miR-940 1 0 0
chr19:58548345|58548592 hsa-miR-3142 0 1 0
chr19:58548345|58548592 hsa-miR-4319 0 1 0
chr19:58548345|58548592 hsa-miR-4323 0 1 0
chr19:58548345|58548592 hsa-miR-3649 0 1 0
chr19:58548345|58548592 hsa-miR-3918 0 1 0
chr19:58548345|58548592 hsa-miR-4514 0 1 0
chr19:58548345|58548592 hsa-miR-4523 0 1 0
chr19:58548345|58548592 hsa-miR-378i 0 1 0
chr19:58548345|58548592 hsa-miR-4648 0 1 0
chr19:58548345|58548592 hsa-miR-4730 1 0 0
chr19:58548345|58548592 hsa-miR-4734 1 0 0
chr19:58548345|58548592 hsa-miR-6088 0 1 0
chr19:58548345|58548592 hsa-miR-7703 1 1 0
chr19:58548345|58548592 hsa-miR-8073 0 1 0
chr19:58548345|58548592 hsa-miR-9-5p 0 1 0
chr19:58548345|58548592 hsa-miR-1972 1 0 0
chr19:58548345|58548592 hsa-miR-6806-5p 1 0 0
chr19:58548345|58548592 hsa-miR-3180-3p 1 0 0
chr19:58548345|58548592 hsa-miR-2467-5p 1 0 0
chr19:58548345|58548592 hsa-miR-1343-3p 1 0 0
chr19:58548345|58548592 hsa-miR-5088-5p 0 1 0
chr19:58548345|58548592 hsa-miR-1909-5p 0 1 0
chr19:58548345|58548592 hsa-miR-6784-5p 0 1 0
chr19:58548345|58548592 hsa-miR-6753-5p 1 0 0
chr19:58548345|58548592 hsa-miR-4690-5p 0 1 0
chr19:58548345|58548592 hsa-miR-659-5p 0 1 0
chr19:58548345|58548592 hsa-miR-3690 0 1 0
chr19:58548345|58548592 hsa-miR-194-3p 0 1 0
chr19:58548345|58548592 hsa-miR-4776-5p 1 1 0
chr19:58548345|58548592 hsa-miR-7160-3p 0 1 0
chr19:58548345|58548592 hsa-miR-6804-3p 1 0 0
chr19:58548345|58548592 hsa-miR-4758-3p 1 1 0
chr19:58548345|58548592 hsa-miR-6837-3p 1 0 0
chr19:58548345|58548592 hsa-miR-371a-3p 0 1 0
chr19:58548345|58548592 hsa-miR-6792-5p 0 1 0
chr19:58548345|58548592 hsa-miR-4749-3p 0 1 0
chr19:58548345|58548592 hsa-miR-1285-5p 0 1 0
chr19:58548345|58548592 hsa-miR-6767-3p 0 1 0
chr19:58548345|58548592 hsa-miR-3173-5p 0 1 0
chr19:58548345|58548592 hsa-miR-7158-5p 0 1 0
chr19:58548345|58548592 hsa-miR-3664-5p 0 1 0
chr19:58548345|58548592 hsa-miR-4763-3p 1 1 0
chr19:58548345|58548592 hsa-miR-6722-3p 1 0 0
chr19:58548345|58548592 hsa-miR-6808-5p 0 1 0
chr19:58548345|58548592 hsa-miR-1915-3p 0 1 0
chr19:58548345|58548592 hsa-miR-6836-5p 1 1 0
chr19:58548345|58548592 hsa-miR-4685-5p 0 1 0
chr19:58548345|58548592 hsa-miR-6511b-5p 0 1 0
chr19:58548345|58548592 hsa-miR-6799-3p 0 1 0
chr19:58548345|58548592 hsa-miR-1271-3p 1 0 0
chr19:58548345|58548592 hsa-miR-6773-5p 0 1 0
chr19:58548345|58548592 hsa-miR-3116 0 1 0
chr19:58548345|58548592 hsa-miR-769-3p 1 0 0
chr19:58548345|58548592 hsa-miR-6810-3p 0 1 0
chr19:58548345|58548592 hsa-miR-6837-5p 0 1 0
chr19:58548345|58548592 hsa-miR-6775-3p 1 1 0
chr19:58548345|58548592 hsa-miR-6764-5p 0 1 0
chr19:58548345|58548592 hsa-miR-4661-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:58548345|58548592
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MLPEPCLLRGPGALGGAMGAGPVELVPGRSATILPAKRREKRK
Nucleotide Sequence CTGCTGCCAGAGCCCTGCTTGCTCAGGGGCCCTGGGGCTCTTGGAGGGGCCATGGGTGCAGGGCCTGTTGAGTTAGTGCCAGGACGCTCTGCCACAATCTTGCCTGCAAAAAGAAGAGAGAAACGTAAGTAG
CircID chr19:58548345|58548592
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MPQSCLQKEERNVSRCSTWGNNRVR
Nucleotide Sequence CTGCCACAATCTTGCCTGCAAAAAGAAGAGAGAAACGTAAGTAGGTGCAGCACGTGGGGTAATAACAGAGTGAGGTAA
CircID chr19:58548345|58548592
ORF Type ORF3
Protein Length 69
Nucleotide Length 210
Protein Sequence MKFQWDLNAWTKSAEAFGGSPALPHSVITPRAAPTYVSLFFLQARLWQSVLALTQQALHPWPLQEPQGP
Nucleotide Sequence ATGAAGTTTCAGTGGGACCTCAATGCCTGGACCAAGAGTGCCGAGGCCTTTGGTGGGTCCCCAGCTTTACCTCACTCTGTTATTACCCCACGTGCTGCACCTACTTACGTTTCTCTCTTCTTTTTGCAGGCAAGATTGTGGCAGAGCGTCCTGGCACTAACTCAACAGGCCCTGCACCCATGGCCCCTCCAAGAGCCCCAGGGCCCCTGA
CircID chr19:58548345|58548592
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MPGPRVPRPLVGPQLYLTLLLPHVLHLLTFLSSFCRQDCGRASWH
Nucleotide Sequence ATGCCTGGACCAAGAGTGCCGAGGCCTTTGGTGGGTCCCCAGCTTTACCTCACTCTGTTATTACCCCACGTGCTGCACCTACTTACGTTTCTCTCTTCTTTTTGCAGGCAAGATTGTGGCAGAGCGTCCTGGCACTAA
CircID chr19:58548345|58548592
ORF Type ORF5
Protein Length 70
Nucleotide Length 210
Protein Sequence MDQECRGLWWVPSFTSLCYYPTCCTYLRFSLLFAGKIVAERPGTNSTGPAPMAPPRAPGPLSKQGSGSSQ
Nucleotide Sequence CTGGACCAAGAGTGCCGAGGCCTTTGGTGGGTCCCCAGCTTTACCTCACTCTGTTATTACCCCACGTGCTGCACCTACTTACGTTTCTCTCTTCTTTTTGCAGGCAAGATTGTGGCAGAGCGTCCTGGCACTAACTCAACAGGCCCTGCACCCATGGCCCCTCCAAGAGCCCCAGGGCCCCTGAGCAAGCAGGGCTCTGGCAGCAGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab