CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58549390|58549757
Strand -
CircType exon
Host Gene ENSG00000130726.10;
Algorism CIRI2;
Sequence CAAACCTGTGCTTATGGCTCTTGCGGAGGGTCCTGGTGCTGAGGGTCCCCGCCTGGCCTCACCTAGTGGCAGCACCAGCTCAGGGCTGGAGGTGGTGGCTCCTGAGGGTACCTCAGCCCCAGGTGGTGGCCCGGGAACCCTGGATGACAGTGCCACCATTTGCCGTGTCTGCCAGAAGCCAGGCGATCTGGTTATGTGCAACCAGTGTGAGTTTTGTTTCCACCTGGACTGTCACCTGCCGGCCCTGCAGGATGTACCAGGGTGAGTGTGAGGCTGGTGGGGGTCAAGTCTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAGGGAGGAGTGGAGCTGCTCACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58549390|58549757 hsa-let-7b-5p 0 0 1
chr19:58549390|58549757 hsa-let-7b-3p 0 0 1
chr19:58549390|58549757 hsa-let-7c-5p 0 0 1
chr19:58549390|58549757 hsa-let-7c-3p 0 0 1
chr19:58549390|58549757 hsa-let-7d-5p 0 0 1
chr19:58549390|58549757 hsa-let-7d-3p 0 0 1
chr19:58549390|58549757 hsa-let-7e-5p 0 0 1
chr19:58549390|58549757 hsa-let-7e-3p 0 0 1
chr19:58549390|58549757 hsa-miR-29a-5p 0 0 1
chr19:58549390|58549757 hsa-miR-29a-3p 0 0 1
chr19:58549390|58549757 hsa-miR-98-5p 0 0 1
chr19:58549390|58549757 hsa-miR-98-3p 0 0 1
chr19:58549390|58549757 hsa-miR-198 0 0 1
chr19:58549390|58549757 hsa-let-7g-5p 0 0 1
chr19:58549390|58549757 hsa-let-7g-3p 0 0 1
chr19:58549390|58549757 hsa-let-7i-5p 0 0 1
chr19:58549390|58549757 hsa-let-7i-3p 0 0 1
chr19:58549390|58549757 hsa-miR-29c-5p 0 0 1
chr19:58549390|58549757 hsa-miR-29c-3p 0 0 1
chr19:58549390|58549757 hsa-miR-335-5p 0 0 1
chr19:58549390|58549757 hsa-miR-335-3p 0 0 1
chr19:58549390|58549757 hsa-miR-202-5p 0 0 1
chr19:58549390|58549757 hsa-miR-202-3p 0 0 1
chr19:58549390|58549757 hsa-miR-522-5p 0 0 1
chr19:58549390|58549757 hsa-miR-522-3p 0 0 1
chr19:58549390|58549757 hsa-miR-558 0 0 1
chr19:58549390|58549757 hsa-miR-646 0 0 1
chr19:58549390|58549757 hsa-miR-1323 0 0 1
chr19:58549390|58549757 hsa-miR-766-5p 0 0 1
chr19:58549390|58549757 hsa-miR-766-3p 0 0 1
chr19:58549390|58549757 hsa-miR-1182 0 0 1
chr19:58549390|58549757 hsa-miR-1226-5p 0 0 1
chr19:58549390|58549757 hsa-miR-1226-3p 0 0 1
chr19:58549390|58549757 hsa-miR-1205 0 1 1
chr19:58549390|58549757 hsa-miR-548o-3p 0 0 1
chr19:58549390|58549757 hsa-miR-1324 0 0 1
chr19:58549390|58549757 hsa-miR-548o 0 0 1
chr19:58549390|58549757 hsa-miR-125a-3p 0 1 1
chr19:58549390|58549757 hsa-miR-125a-5p 0 0 1
chr19:58549390|58549757 hsa-miR-483-3p 0 1 1
chr19:58549390|58549757 hsa-miR-455-3p 0 1 1
chr19:58549390|58549757 hsa-miR-342-3p 0 0 1
chr19:58549390|58549757 hsa-miR-542-3p 0 0 1
chr19:58549390|58549757 hsa-miR-220b 0 0 1
chr19:58549390|58549757 hsa-miR-125b 0 0 1
chr19:58549390|58549757 hsa-miR-138 0 0 1
chr19:58549390|58549757 hsa-let-7a 0 0 1
chr19:58549390|58549757 hsa-let-7f 0 0 1
chr19:58549390|58549757 hsa-miR-663 0 0 1
chr19:58549390|58549757 hsa-miR-29b 0 0 1
chr19:58549390|58549757 hsa-miR-638 1 0 0
chr19:58549390|58549757 hsa-miR-661 1 0 0
chr19:58549390|58549757 hsa-miR-663a 0 1 0
chr19:58549390|58549757 hsa-miR-657 1 0 0
chr19:58549390|58549757 hsa-miR-762 1 0 0
chr19:58549390|58549757 hsa-miR-1470 0 1 0
chr19:58549390|58549757 hsa-miR-711 1 0 0
chr19:58549390|58549757 hsa-miR-3166 0 1 0
chr19:58549390|58549757 hsa-miR-4316 0 1 0
chr19:58549390|58549757 hsa-miR-3918 0 1 0
chr19:58549390|58549757 hsa-miR-3937 0 1 0
chr19:58549390|58549757 hsa-miR-4462 1 1 0
chr19:58549390|58549757 hsa-miR-4498 0 1 0
chr19:58549390|58549757 hsa-miR-4527 0 1 0
chr19:58549390|58549757 hsa-miR-4656 1 1 0
chr19:58549390|58549757 hsa-miR-4710 0 1 0
chr19:58549390|58549757 hsa-miR-5685 0 1 0
chr19:58549390|58549757 hsa-miR-6132 0 1 0
chr19:58549390|58549757 hsa-miR-7976 0 1 0
chr19:58549390|58549757 hsa-miR-138-5p 1 1 0
chr19:58549390|58549757 hsa-miR-150-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6840-3p 1 0 0
chr19:58549390|58549757 hsa-miR-500b-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6720-5p 1 1 0
chr19:58549390|58549757 hsa-miR-7851-3p 0 1 0
chr19:58549390|58549757 hsa-miR-1227-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6089 1 0 0
chr19:58549390|58549757 hsa-miR-512-3p 0 1 0
chr19:58549390|58549757 hsa-miR-23b-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6849-3p 0 1 0
chr19:58549390|58549757 hsa-miR-185-3p 0 1 0
chr19:58549390|58549757 hsa-miR-23a-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6765-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6852-5p 0 1 0
chr19:58549390|58549757 hsa-miR-4793-5p 0 1 0
chr19:58549390|58549757 hsa-miR-542-5p 0 1 0
chr19:58549390|58549757 hsa-miR-1908-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6749-5p 1 0 0
chr19:58549390|58549757 hsa-miR-4446-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6736-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6800-5p 0 1 0
chr19:58549390|58549757 hsa-miR-2276-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6781-5p 0 1 0
chr19:58549390|58549757 hsa-miR-181b-5p 1 0 0
chr19:58549390|58549757 hsa-miR-3065-3p 1 1 0
chr19:58549390|58549757 hsa-miR-1910-5p 1 0 0
chr19:58549390|58549757 hsa-miR-6871-3p 0 1 0
chr19:58549390|58549757 hsa-miR-7848-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6868-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6859-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6767-5p 0 1 0
chr19:58549390|58549757 hsa-miR-624-5p 0 1 0
chr19:58549390|58549757 hsa-miR-3177-3p 1 0 0
chr19:58549390|58549757 hsa-miR-3664-3p 0 1 0
chr19:58549390|58549757 hsa-miR-3620-3p 0 1 0
chr19:58549390|58549757 hsa-miR-4771 0 1 0
chr19:58549390|58549757 hsa-miR-6813-5p 1 1 0
chr19:58549390|58549757 hsa-miR-6819-5p 1 0 0
chr19:58549390|58549757 hsa-miR-3620-5p 1 1 0
chr19:58549390|58549757 hsa-miR-6836-5p 1 1 0
chr19:58549390|58549757 hsa-miR-10396b-5p 0 1 0
chr19:58549390|58549757 hsa-miR-4685-5p 1 0 0
chr19:58549390|58549757 hsa-miR-4749-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6799-3p 1 0 0
chr19:58549390|58549757 hsa-miR-6791-5p 1 1 0
chr19:58549390|58549757 hsa-miR-7107-3p 0 1 0
chr19:58549390|58549757 hsa-miR-6512-3p 0 1 0
chr19:58549390|58549757 hsa-miR-10394-5p 0 1 0
chr19:58549390|58549757 hsa-miR-1295b-5p 0 1 0
chr19:58549390|58549757 hsa-miR-4691-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6500-5p 0 1 0
chr19:58549390|58549757 hsa-miR-32-5p 0 1 0
chr19:58549390|58549757 hsa-miR-6503-5p 0 1 0
chr19:58549390|58549757 hsa-miR-3059-3p 0 1 0
chr19:58549390|58549757 hsa-miR-216b-3p 1 1 0
chr19:58549390|58549757 hsa-miR-147b-5p 0 1 0
chr19:58549390|58549757 hsa-miR-181d-5p 1 0 0
chr19:58549390|58549757 hsa-miR-410-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:58549390|58549757
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MFPPGLSPAGPAGCTRVSVRLVGVKSGCWAVWTGSCADPYFLHPREEWSCS
Nucleotide Sequence TTGTTTCCACCTGGACTGTCACCTGCCGGCCCTGCAGGATGTACCAGGGTGAGTGTGAGGCTGGTGGGGGTCAAGTCTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAGGGAGGAGTGGAGCTGCTCA
CircID chr19:58549390|58549757
ORF Type ORF2
Protein Length 83
Nucleotide Length 252
Protein Sequence MALAEGPGAEGPRLASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG
Nucleotide Sequence ATGGCTCTTGCGGAGGGTCCTGGTGCTGAGGGTCCCCGCCTGGCCTCACCTAGTGGCAGCACCAGCTCAGGGCTGGAGGTGGTGGCTCCTGAGGGTACCTCAGCCCCAGGTGGTGGCCCGGGAACCCTGGATGACAGTGCCACCATTTGCCGTGTCTGCCAGAAGCCAGGCGATCTGGTTATGTGCAACCAGTGTGAGTTTTGTTTCCACCTGGACTGTCACCTGCCGGCCCTGCAGGATGTACCAGGGTGA
CircID chr19:58549390|58549757
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MGVGLSGQDHVQTLIFFTLGRSGAAH
Nucleotide Sequence CTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAGGGAGGAGTGGAGCTGCTCAC
CircID chr19:58549390|58549757
ORF Type ORF4
Protein Length 113
Nucleotide Length 342
Protein Sequence MCLWLLRRVLVLRVPAWPHLVAAPAQGWRWWLLRVPQPQVVAREPWMTVPPFAVSARSQAIWLCATSVSFVSTWTVTCRPCRMYQGECEAGGGQVWVLGCLDRIMCRPLFSSP
Nucleotide Sequence CTGTGCTTATGGCTCTTGCGGAGGGTCCTGGTGCTGAGGGTCCCCGCCTGGCCTCACCTAGTGGCAGCACCAGCTCAGGGCTGGAGGTGGTGGCTCCTGAGGGTACCTCAGCCCCAGGTGGTGGCCCGGGAACCCTGGATGACAGTGCCACCATTTGCCGTGTCTGCCAGAAGCCAGGCGATCTGGTTATGTGCAACCAGTGTGAGTTTTGTTTCCACCTGGACTGTCACCTGCCGGCCCTGCAGGATGTACCAGGGTGAGTGTGAGGCTGGTGGGGGTCAAGTCTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAG
CircID chr19:58549390|58549757
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MTPTSLTLTLVHPAGPAGDSPGGNKTHTGCT
Nucleotide Sequence TTGACCCCCACCAGCCTCACACTCACCCTGGTACATCCTGCAGGGCCGGCAGGTGACAGTCCAGGTGGAAACAAAACTCACACTGGTTGCACATAA
CircID chr19:58549390|58549757
ORF Type ORF6
Protein Length 39
Nucleotide Length 120
Protein Sequence MASGRHGKWWHCHPGFPGHHLGLRYPQEPPPPALSWCCH
Nucleotide Sequence CTGGCTTCTGGCAGACACGGCAAATGGTGGCACTGTCATCCAGGGTTCCCGGGCCACCACCTGGGGCTGAGGTACCCTCAGGAGCCACCACCTCCAGCCCTGAGCTGGTGCTGCCACTAG
CircID chr19:58549390|58549757
ORF Type ORF7
Protein Length 45
Nucleotide Length 138
Protein Sequence MQGRQVTVQVETKLTLVAHNQIAWLLADTANGGTVIQGSRATTWG
Nucleotide Sequence CTGCAGGGCCGGCAGGTGACAGTCCAGGTGGAAACAAAACTCACACTGGTTGCACATAACCAGATCGCCTGGCTTCTGGCAGACACGGCAAATGGTGGCACTGTCATCCAGGGTTCCCGGGCCACCACCTGGGGCTGA
CircID chr19:58549390|58549757
ORF Type ORF8
Protein Length 67
Nucleotide Length 201
Protein Sequence MHITRSPGFWQTRQMVALSSRVPGPPPGAEVPSGATTSSPELVLPLGEARRGPSAPGPSARAISTGL
Nucleotide Sequence TTGCACATAACCAGATCGCCTGGCTTCTGGCAGACACGGCAAATGGTGGCACTGTCATCCAGGGTTCCCGGGCCACCACCTGGGGCTGAGGTACCCTCAGGAGCCACCACCTCCAGCCCTGAGCTGGTGCTGCCACTAGGTGAGGCCAGGCGGGGACCCTCAGCACCAGGACCCTCCGCAAGAGCCATAAGCACAGGTTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab