CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58549613|58549803
Strand -
CircType exon
Host Gene ENSG00000130726.10;
Algorism CIRI2;
Sequence CTGGACTGTCACCTGCCGGCCCTGCAGGATGTACCAGGGTGAGTGTGAGGCTGGTGGGGGTCAAGTCTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAGGGAGGAGTGGAGCTGCTCACTCTGCCATGTGCTCCCTGACCTGAAGGAGGAGGATGGCAGCCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58549613|58549803 hsa-miR-198 0 0 1
chr19:58549613|58549803 hsa-miR-205-5p 0 0 1
chr19:58549613|58549803 hsa-miR-205-3p 0 0 1
chr19:58549613|58549803 hsa-miR-646 0 0 1
chr19:58549613|58549803 hsa-miR-1182 0 0 1
chr19:58549613|58549803 hsa-miR-1226-5p 0 0 1
chr19:58549613|58549803 hsa-miR-1226-3p 0 0 1
chr19:58549613|58549803 hsa-miR-1205 0 1 1
chr19:58549613|58549803 hsa-miR-1324 0 0 1
chr19:58549613|58549803 hsa-miR-125a-3p 0 0 1
chr19:58549613|58549803 hsa-miR-485-5p 0 0 1
chr19:58549613|58549803 hsa-miR-483-3p 0 1 1
chr19:58549613|58549803 hsa-miR-455-3p 0 0 1
chr19:58549613|58549803 hsa-miR-342-3p 0 0 1
chr19:58549613|58549803 hsa-miR-542-3p 0 0 1
chr19:58549613|58549803 hsa-miR-638 1 0 0
chr19:58549613|58549803 hsa-miR-4268 0 1 0
chr19:58549613|58549803 hsa-miR-4270 0 1 0
chr19:58549613|58549803 hsa-miR-3918 0 1 0
chr19:58549613|58549803 hsa-miR-4498 0 1 0
chr19:58549613|58549803 hsa-miR-4527 0 1 0
chr19:58549613|58549803 hsa-miR-5685 0 1 0
chr19:58549613|58549803 hsa-miR-6132 0 1 0
chr19:58549613|58549803 hsa-miR-11399 0 1 0
chr19:58549613|58549803 hsa-miR-12128 1 1 0
chr19:58549613|58549803 hsa-miR-150-3p 0 1 0
chr19:58549613|58549803 hsa-miR-500b-3p 0 1 0
chr19:58549613|58549803 hsa-miR-197-5p 1 0 0
chr19:58549613|58549803 hsa-miR-6849-3p 0 1 0
chr19:58549613|58549803 hsa-miR-6882-3p 1 0 0
chr19:58549613|58549803 hsa-miR-4793-5p 1 1 0
chr19:58549613|58549803 hsa-miR-4640-5p 1 0 0
chr19:58549613|58549803 hsa-miR-5196-3p 0 1 0
chr19:58549613|58549803 hsa-miR-4446-3p 0 1 0
chr19:58549613|58549803 hsa-miR-6736-3p 0 1 0
chr19:58549613|58549803 hsa-miR-6800-5p 0 1 0
chr19:58549613|58549803 hsa-miR-6781-5p 0 1 0
chr19:58549613|58549803 hsa-miR-181b-5p 1 0 0
chr19:58549613|58549803 hsa-miR-3180-5p 1 0 0
chr19:58549613|58549803 hsa-miR-6871-3p 0 1 0
chr19:58549613|58549803 hsa-miR-6859-3p 0 1 0
chr19:58549613|58549803 hsa-miR-4649-3p 0 1 0
chr19:58549613|58549803 hsa-miR-5589-3p 1 1 0
chr19:58549613|58549803 hsa-miR-3620-3p 0 1 0
chr19:58549613|58549803 hsa-miR-4771 0 1 0
chr19:58549613|58549803 hsa-miR-6865-5p 1 0 0
chr19:58549613|58549803 hsa-miR-6836-5p 0 1 0
chr19:58549613|58549803 hsa-miR-6777-5p 1 0 0
chr19:58549613|58549803 hsa-miR-5586-3p 0 1 0
chr19:58549613|58549803 hsa-miR-7843-5p 1 0 0
chr19:58549613|58549803 hsa-miR-7107-3p 0 1 0
chr19:58549613|58549803 hsa-miR-6727-3p 0 1 0
chr19:58549613|58549803 hsa-miR-10394-5p 0 1 0
chr19:58549613|58549803 hsa-miR-1295b-5p 0 1 0
chr19:58549613|58549803 hsa-miR-4769-3p 1 1 0
chr19:58549613|58549803 hsa-miR-6503-5p 0 1 0
chr19:58549613|58549803 hsa-miR-3059-3p 0 1 0
chr19:58549613|58549803 hsa-miR-216b-3p 1 1 0
chr19:58549613|58549803 hsa-miR-181d-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:58549613|58549803
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MGVGLSGQDHVQTLIFFTLGRSGAAHSAMCSLT
Nucleotide Sequence CTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAGGGAGGAGTGGAGCTGCTCACTCTGCCATGTGCTCCCTGACCTGA
CircID chr19:58549613|58549803
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MYQGECEAGGGQVWVLGCLDRIMCRPLFSSP
Nucleotide Sequence ATGTACCAGGGTGAGTGTGAGGCTGGTGGGGGTCAAGTCTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAG
CircID chr19:58549613|58549803
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MSPAGPAGCTRVSVRLVGVKSGCWAVWTGSCADPYFLHPREEWSCSLCHVLPDLKEEDGSLS
Nucleotide Sequence CTGTCACCTGCCGGCCCTGCAGGATGTACCAGGGTGAGTGTGAGGCTGGTGGGGGTCAAGTCTGGGTGTTGGGCTGTCTGGACAGGATCATGTGCAGACCCTTATTTTCTTCACCCTAGGGAGGAGTGGAGCTGCTCACTCTGCCATGTGCTCCCTGACCTGAAGGAGGAGGATGGCAGCCTCAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab