CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58552055|58552179
Strand -
CircType exon
Host Gene ENSG00000130724.7;
Algorism CIRI2;
Sequence CTCTCCTCTTCATCTTCCTCATCACCCATGGCATCATCAATGGCATCATTCATCATCTCCTCCTTCATATCCATGATCTCTGCCTGCCGCTCAAACTCCATCATGATCTTCTGGATCTGGGGCAA
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58552055|58552179 hsa-miR-143-5p 0 0 1
chr19:58552055|58552179 hsa-miR-143-3p 0 0 1
chr19:58552055|58552179 hsa-miR-433-5p 0 0 1
chr19:58552055|58552179 hsa-miR-433-3p 0 0 1
chr19:58552055|58552179 hsa-miR-765 1 1 1
chr19:58552055|58552179 hsa-miR-1262 1 0 1
chr19:58552055|58552179 hsa-miR-1272 0 0 1
chr19:58552055|58552179 hsa-miR-1252-5p 0 0 1
chr19:58552055|58552179 hsa-miR-1252-3p 0 0 1
chr19:58552055|58552179 hsa-miR-1322 0 1 1
chr19:58552055|58552179 hsa-miR-490-5p 0 0 1
chr19:58552055|58552179 hsa-miR-1308 0 0 1
chr19:58552055|58552179 hsa-miR-608 1 0 0
chr19:58552055|58552179 hsa-miR-1293 1 0 0
chr19:58552055|58552179 hsa-miR-3196 1 0 0
chr19:58552055|58552179 hsa-miR-4502 0 1 0
chr19:58552055|58552179 hsa-miR-4506 1 0 0
chr19:58552055|58552179 hsa-miR-4510 1 1 0
chr19:58552055|58552179 hsa-miR-4514 0 1 0
chr19:58552055|58552179 hsa-miR-4533 1 0 0
chr19:58552055|58552179 hsa-miR-4534 1 0 0
chr19:58552055|58552179 hsa-miR-3960 1 0 0
chr19:58552055|58552179 hsa-miR-4657 1 0 0
chr19:58552055|58552179 hsa-miR-4688 1 0 0
chr19:58552055|58552179 hsa-miR-4689 1 0 0
chr19:58552055|58552179 hsa-miR-4692 0 1 0
chr19:58552055|58552179 hsa-miR-4710 1 0 0
chr19:58552055|58552179 hsa-miR-4739 1 1 0
chr19:58552055|58552179 hsa-miR-4784 0 1 0
chr19:58552055|58552179 hsa-miR-5698 1 0 0
chr19:58552055|58552179 hsa-miR-6088 0 1 0
chr19:58552055|58552179 hsa-miR-6127 1 1 0
chr19:58552055|58552179 hsa-miR-6133 1 0 0
chr19:58552055|58552179 hsa-miR-7150 1 0 0
chr19:58552055|58552179 hsa-miR-8055 0 1 0
chr19:58552055|58552179 hsa-miR-8072 1 0 0
chr19:58552055|58552179 hsa-miR-12118 0 1 0
chr19:58552055|58552179 hsa-miR-12128 1 0 0
chr19:58552055|58552179 hsa-miR-7106-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6894-5p 1 1 0
chr19:58552055|58552179 hsa-miR-6857-5p 1 0 0
chr19:58552055|58552179 hsa-miR-8071 1 0 0
chr19:58552055|58552179 hsa-miR-6833-5p 0 1 0
chr19:58552055|58552179 hsa-miR-5187-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6880-5p 1 0 0
chr19:58552055|58552179 hsa-miR-4709-3p 0 1 0
chr19:58552055|58552179 hsa-miR-4722-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6890-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6820-5p 1 1 0
chr19:58552055|58552179 hsa-miR-6741-5p 1 0 0
chr19:58552055|58552179 hsa-miR-3622b-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6748-5p 1 0 0
chr19:58552055|58552179 hsa-miR-3150b-3p 0 1 0
chr19:58552055|58552179 hsa-miR-6821-5p 1 0 0
chr19:58552055|58552179 hsa-miR-5006-5p 1 0 0
chr19:58552055|58552179 hsa-miR-5088-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6740-5p 1 0 0
chr19:58552055|58552179 hsa-miR-1229-5p 1 0 0
chr19:58552055|58552179 hsa-miR-193b-5p 1 0 0
chr19:58552055|58552179 hsa-miR-4764-5p 1 0 0
chr19:58552055|58552179 hsa-miR-1228-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6847-5p 1 1 0
chr19:58552055|58552179 hsa-miR-3648 1 0 0
chr19:58552055|58552179 hsa-miR-3189-3p 1 0 0
chr19:58552055|58552179 hsa-miR-1207-5p 1 0 0
chr19:58552055|58552179 hsa-miR-4763-3p 1 0 0
chr19:58552055|58552179 hsa-miR-6769b-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6870-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6756-5p 1 0 0
chr19:58552055|58552179 hsa-miR-11181-3p 1 1 0
chr19:58552055|58552179 hsa-miR-1249-5p 1 0 0
chr19:58552055|58552179 hsa-miR-7111-5p 1 0 0
chr19:58552055|58552179 hsa-miR-328-5p 1 0 0
chr19:58552055|58552179 hsa-miR-4701-3p 1 1 0
chr19:58552055|58552179 hsa-miR-4726-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6794-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6858-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6831-5p 1 0 0
chr19:58552055|58552179 hsa-miR-939-5p 1 0 0
chr19:58552055|58552179 hsa-miR-1910-3p 0 1 0
chr19:58552055|58552179 hsa-miR-6511b-5p 1 0 0
chr19:58552055|58552179 hsa-miR-3085-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6856-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6855-5p 1 1 0
chr19:58552055|58552179 hsa-miR-3679-5p 1 0 0
chr19:58552055|58552179 hsa-miR-6891-5p 1 1 0
chr19:58552055|58552179 hsa-miR-4716-3p 1 0 0
chr19:58552055|58552179 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:58552055|58552179
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MASSMASFIISSFISMISACRSNSIMIFWIWG
Nucleotide Sequence ATGGCATCATCAATGGCATCATTCATCATCTCCTCCTTCATATCCATGATCTCTGCCTGCCGCTCAAACTCCATCATGATCTTCTGGATCTGGGGC
CircID chr19:58552055|58552179
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence LPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEE
Nucleotide Sequence TTGCCCCAGATCCAGAAGATCATGATGGAGTTTGAGCGGCAGGCAGAGATCATGGATATGAAGGAGGAGATGATGAATGATGCCATTGATGATGCCATGGGTGATGAGGAAGATGAAGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab