CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58552055|58552333
Strand -
CircType exon
Host Gene ENSG00000130724.7;
Algorism CIRI2;
Sequence CTCTCCTCTTCATCTTCCTCATCACCCATGGCATCATCAATGGCATCATTCATCATCTCCTCCTTCATATCCATGATCTCTGCCTGCCGCTCAAACTCCATCATGATCTTCTGGATCTGGGGCAACTTCAGCTGGAAGTGACAGGAGTGTGAGTGTGATCCCCATGGGTCGTGGGAGTGGGAAGGGGGATTGGGAAAAGCGCACCTGTCTGTTCATGGTGCCCATGGCCTTGGTGACACCCTTCATGGCTTGTGCCATCGAGTTGTTGGACTTGAGTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58552055|58552333 hsa-miR-183-5p 0 0 1
chr19:58552055|58552333 hsa-miR-183-3p 0 0 1
chr19:58552055|58552333 hsa-miR-143-5p 0 0 1
chr19:58552055|58552333 hsa-miR-143-3p 0 0 1
chr19:58552055|58552333 hsa-miR-433-5p 0 0 1
chr19:58552055|58552333 hsa-miR-433-3p 0 0 1
chr19:58552055|58552333 hsa-miR-551a 0 0 1
chr19:58552055|58552333 hsa-miR-552-5p 0 0 1
chr19:58552055|58552333 hsa-miR-552-3p 0 0 1
chr19:58552055|58552333 hsa-miR-551b-5p 0 0 1
chr19:58552055|58552333 hsa-miR-551b-3p 0 0 1
chr19:58552055|58552333 hsa-miR-597-5p 0 0 1
chr19:58552055|58552333 hsa-miR-597-3p 0 0 1
chr19:58552055|58552333 hsa-miR-662 0 0 1
chr19:58552055|58552333 hsa-miR-668-5p 0 0 1
chr19:58552055|58552333 hsa-miR-668-3p 0 0 1
chr19:58552055|58552333 hsa-miR-765 1 1 1
chr19:58552055|58552333 hsa-miR-1262 1 0 1
chr19:58552055|58552333 hsa-miR-1272 0 0 1
chr19:58552055|58552333 hsa-miR-1252-5p 0 0 1
chr19:58552055|58552333 hsa-miR-1252-3p 0 0 1
chr19:58552055|58552333 hsa-miR-1322 0 1 1
chr19:58552055|58552333 hsa-miR-1324 0 0 1
chr19:58552055|58552333 hsa-miR-532-3p 0 1 1
chr19:58552055|58552333 hsa-miR-767-5p 0 0 1
chr19:58552055|58552333 hsa-miR-490-5p 0 0 1
chr19:58552055|58552333 hsa-miR-188-3p 0 0 1
chr19:58552055|58552333 hsa-miR-483-3p 0 1 1
chr19:58552055|58552333 hsa-miR-342-3p 0 0 1
chr19:58552055|58552333 hsa-miR-1260 0 0 1
chr19:58552055|58552333 hsa-miR-1308 0 0 1
chr19:58552055|58552333 hsa-miR-608 1 0 0
chr19:58552055|58552333 hsa-miR-764 0 1 0
chr19:58552055|58552333 hsa-miR-940 1 0 0
chr19:58552055|58552333 hsa-miR-1293 1 0 0
chr19:58552055|58552333 hsa-miR-4441 1 0 0
chr19:58552055|58552333 hsa-miR-4502 0 1 0
chr19:58552055|58552333 hsa-miR-4506 1 0 0
chr19:58552055|58552333 hsa-miR-4510 1 1 0
chr19:58552055|58552333 hsa-miR-4514 0 1 0
chr19:58552055|58552333 hsa-miR-4533 1 0 0
chr19:58552055|58552333 hsa-miR-4534 1 0 0
chr19:58552055|58552333 hsa-miR-3960 1 0 0
chr19:58552055|58552333 hsa-miR-4657 1 0 0
chr19:58552055|58552333 hsa-miR-4688 1 0 0
chr19:58552055|58552333 hsa-miR-4689 1 0 0
chr19:58552055|58552333 hsa-miR-4692 0 1 0
chr19:58552055|58552333 hsa-miR-4710 1 0 0
chr19:58552055|58552333 hsa-miR-4739 1 1 0
chr19:58552055|58552333 hsa-miR-4784 0 1 0
chr19:58552055|58552333 hsa-miR-5698 1 0 0
chr19:58552055|58552333 hsa-miR-6088 0 1 0
chr19:58552055|58552333 hsa-miR-6127 1 1 0
chr19:58552055|58552333 hsa-miR-6133 1 0 0
chr19:58552055|58552333 hsa-miR-8055 0 1 0
chr19:58552055|58552333 hsa-miR-12118 0 1 0
chr19:58552055|58552333 hsa-miR-12128 1 0 0
chr19:58552055|58552333 hsa-miR-150-3p 1 1 0
chr19:58552055|58552333 hsa-miR-7106-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6894-5p 1 1 0
chr19:58552055|58552333 hsa-miR-6857-5p 1 0 0
chr19:58552055|58552333 hsa-miR-8071 1 0 0
chr19:58552055|58552333 hsa-miR-6804-5p 0 1 0
chr19:58552055|58552333 hsa-miR-6833-5p 0 1 0
chr19:58552055|58552333 hsa-miR-5187-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6880-5p 1 0 0
chr19:58552055|58552333 hsa-miR-4709-3p 0 1 0
chr19:58552055|58552333 hsa-miR-4722-5p 1 0 0
chr19:58552055|58552333 hsa-miR-4753-5p 0 1 0
chr19:58552055|58552333 hsa-miR-593-5p 1 1 0
chr19:58552055|58552333 hsa-miR-6890-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6820-5p 1 1 0
chr19:58552055|58552333 hsa-miR-6741-5p 1 0 0
chr19:58552055|58552333 hsa-miR-3622b-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6748-5p 1 0 0
chr19:58552055|58552333 hsa-miR-877-3p 0 1 0
chr19:58552055|58552333 hsa-miR-3150b-3p 0 1 0
chr19:58552055|58552333 hsa-miR-6821-5p 1 0 0
chr19:58552055|58552333 hsa-miR-5006-5p 1 0 0
chr19:58552055|58552333 hsa-miR-5088-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6740-5p 1 0 0
chr19:58552055|58552333 hsa-miR-1229-5p 1 0 0
chr19:58552055|58552333 hsa-miR-193b-5p 1 0 0
chr19:58552055|58552333 hsa-miR-4764-5p 1 0 0
chr19:58552055|58552333 hsa-miR-1228-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6847-5p 1 1 0
chr19:58552055|58552333 hsa-miR-3648 1 0 0
chr19:58552055|58552333 hsa-miR-3189-3p 1 0 0
chr19:58552055|58552333 hsa-miR-3922-5p 0 1 0
chr19:58552055|58552333 hsa-miR-6773-3p 0 1 0
chr19:58552055|58552333 hsa-miR-4433b-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6734-3p 0 1 0
chr19:58552055|58552333 hsa-miR-3156-3p 0 1 0
chr19:58552055|58552333 hsa-miR-1207-5p 1 0 0
chr19:58552055|58552333 hsa-miR-4763-3p 1 0 0
chr19:58552055|58552333 hsa-miR-6769b-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6870-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6756-5p 1 0 0
chr19:58552055|58552333 hsa-miR-11181-3p 1 1 0
chr19:58552055|58552333 hsa-miR-1249-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6808-5p 1 0 0
chr19:58552055|58552333 hsa-miR-7111-5p 1 0 0
chr19:58552055|58552333 hsa-miR-3127-3p 0 1 0
chr19:58552055|58552333 hsa-miR-4685-3p 1 0 0
chr19:58552055|58552333 hsa-miR-6836-5p 1 0 0
chr19:58552055|58552333 hsa-miR-328-5p 1 0 0
chr19:58552055|58552333 hsa-miR-4685-5p 1 0 0
chr19:58552055|58552333 hsa-miR-4701-3p 1 1 0
chr19:58552055|58552333 hsa-miR-6794-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6858-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6831-5p 1 0 0
chr19:58552055|58552333 hsa-miR-939-5p 1 0 0
chr19:58552055|58552333 hsa-miR-1910-3p 0 1 0
chr19:58552055|58552333 hsa-miR-6511b-5p 1 0 0
chr19:58552055|58552333 hsa-miR-3085-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6856-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6855-5p 1 1 0
chr19:58552055|58552333 hsa-miR-3679-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6891-5p 1 1 0
chr19:58552055|58552333 hsa-miR-4716-3p 1 0 0
chr19:58552055|58552333 hsa-miR-6849-5p 1 0 0
chr19:58552055|58552333 hsa-miR-6756-3p 1 1 0
chr19:58552055|58552333 hsa-miR-6837-5p 1 0 0
chr19:58552055|58552333 hsa-miR-9851-3p 0 1 0
chr19:58552055|58552333 hsa-miR-495-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:58552055|58552333
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MASSMASFIISSFISMISACRSNSIMIFWIWGNFSWK
Nucleotide Sequence ATGGCATCATCAATGGCATCATTCATCATCTCCTCCTTCATATCCATGATCTCTGCCTGCCGCTCAAACTCCATCATGATCTTCTGGATCTGGGGCAACTTCAGCTGGAAGTGA
CircID chr19:58552055|58552333
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MGKAHLSVHGAHGLGDTLHGLCHRVVGLEC
Nucleotide Sequence TTGGGAAAAGCGCACCTGTCTGTTCATGGTGCCCATGGCCTTGGTGACACCCTTCATGGCTTGTGCCATCGAGTTGTTGGACTTGAGTGT
CircID chr19:58552055|58552333
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MGRGSGKGDWEKRTCLFMVPMALVTPFMACAIELLDLS
Nucleotide Sequence ATGGGTCGTGGGAGTGGGAAGGGGGATTGGGAAAAGCGCACCTGTCTGTTCATGGTGCCCATGGCCTTGGTGACACCCTTCATGGCTTGTGCCATCGAGTTGTTGGACTTGAGT
CircID chr19:58552055|58552333
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MAQAMKGVTKAMGTMNRQVRFSQSPFPLPRPMGITLTLLSLPAEVAPDPEDHDGV
Nucleotide Sequence ATGGCACAAGCCATGAAGGGTGTCACCAAGGCCATGGGCACCATGAACAGACAGGTGCGCTTTTCCCAATCCCCCTTCCCACTCCCACGACCCATGGGGATCACACTCACACTCCTGTCACTTCCAGCTGAAGTTGCCCCAGATCCAGAAGATCATGATGGAGTTTGA
CircID chr19:58552055|58552333
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEE
Nucleotide Sequence CTGAAGTTGCCCCAGATCCAGAAGATCATGATGGAGTTTGAGCGGCAGGCAGAGATCATGGATATGAAGGAGGAGATGATGAATGATGCCATTGATGATGCCATGGGTGATGAGGAAGATGAAGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab