CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58574028|58574244
Strand +
CircType exon
Host Gene ENSG00000267858.4;
Algorism CIRI2;
Sequence CTCGGATTCTCCCTGTCTCTCTTCGTGCTGTCATCTTTCTCTAGGTCTTCGAAAACTGTCAATCCATCTTACTGTATCTCTAATTTCTGTCCCTTTTCTCCCTTCTTGTTTCTGTCCCTCTCCCTTCTTGTCTACCTCTTGAGTCTGGATATCTGCATTTCTTGTCTCTGTGAACCCATTCTGCGTTTCCTTCTTTGTGTCTCTTTCATCTGCATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58574028|58574244 hsa-let-7b-5p 0 0 1
chr19:58574028|58574244 hsa-let-7b-3p 0 0 1
chr19:58574028|58574244 hsa-let-7c-5p 0 0 1
chr19:58574028|58574244 hsa-let-7c-3p 0 0 1
chr19:58574028|58574244 hsa-let-7d-5p 0 0 1
chr19:58574028|58574244 hsa-let-7d-3p 0 0 1
chr19:58574028|58574244 hsa-let-7e-5p 0 0 1
chr19:58574028|58574244 hsa-let-7e-3p 0 0 1
chr19:58574028|58574244 hsa-miR-27a-5p 0 0 1
chr19:58574028|58574244 hsa-miR-27a-3p 0 0 1
chr19:58574028|58574244 hsa-miR-98-5p 0 0 1
chr19:58574028|58574244 hsa-miR-98-3p 0 0 1
chr19:58574028|58574244 hsa-let-7g-5p 0 0 1
chr19:58574028|58574244 hsa-let-7g-3p 0 0 1
chr19:58574028|58574244 hsa-let-7i-5p 0 0 1
chr19:58574028|58574244 hsa-let-7i-3p 0 0 1
chr19:58574028|58574244 hsa-miR-27b-5p 0 0 1
chr19:58574028|58574244 hsa-miR-27b-3p 0 0 1
chr19:58574028|58574244 hsa-miR-144-5p 0 0 1
chr19:58574028|58574244 hsa-miR-144-3p 0 0 1
chr19:58574028|58574244 hsa-miR-379-5p 0 0 1
chr19:58574028|58574244 hsa-miR-379-3p 0 0 1
chr19:58574028|58574244 hsa-miR-335-5p 0 0 1
chr19:58574028|58574244 hsa-miR-335-3p 0 0 1
chr19:58574028|58574244 hsa-miR-1303 0 0 1
chr19:58574028|58574244 hsa-miR-1246 0 0 1
chr19:58574028|58574244 hsa-miR-1252-5p 0 0 1
chr19:58574028|58574244 hsa-miR-1252-3p 0 0 1
chr19:58574028|58574244 hsa-miR-513a-5p 0 0 1
chr19:58574028|58574244 hsa-let-7a 0 0 1
chr19:58574028|58574244 hsa-let-7f 0 0 1
chr19:58574028|58574244 hsa-miR-101 0 0 1
chr19:58574028|58574244 hsa-miR-184 1 0 0
chr19:58574028|58574244 hsa-miR-638 1 0 0
chr19:58574028|58574244 hsa-miR-1275 1 0 0
chr19:58574028|58574244 hsa-miR-711 1 0 0
chr19:58574028|58574244 hsa-miR-3125 1 0 0
chr19:58574028|58574244 hsa-miR-3132 1 1 0
chr19:58574028|58574244 hsa-miR-3138 1 1 0
chr19:58574028|58574244 hsa-miR-3141 1 0 0
chr19:58574028|58574244 hsa-miR-3153 1 0 0
chr19:58574028|58574244 hsa-miR-3154 1 1 0
chr19:58574028|58574244 hsa-miR-3161 1 0 0
chr19:58574028|58574244 hsa-miR-3175 1 0 0
chr19:58574028|58574244 hsa-miR-3197 1 0 0
chr19:58574028|58574244 hsa-miR-4298 1 1 0
chr19:58574028|58574244 hsa-miR-4306 1 0 0
chr19:58574028|58574244 hsa-miR-4271 1 0 0
chr19:58574028|58574244 hsa-miR-3661 1 0 0
chr19:58574028|58574244 hsa-miR-3665 1 0 0
chr19:58574028|58574244 hsa-miR-4428 1 1 0
chr19:58574028|58574244 hsa-miR-4458 1 1 0
chr19:58574028|58574244 hsa-miR-4462 1 0 0
chr19:58574028|58574244 hsa-miR-4476 1 1 0
chr19:58574028|58574244 hsa-miR-4506 1 1 0
chr19:58574028|58574244 hsa-miR-2392 1 0 0
chr19:58574028|58574244 hsa-miR-4510 1 0 0
chr19:58574028|58574244 hsa-miR-4516 1 0 0
chr19:58574028|58574244 hsa-miR-4644 1 1 0
chr19:58574028|58574244 hsa-miR-4647 0 1 0
chr19:58574028|58574244 hsa-miR-4688 1 0 0
chr19:58574028|58574244 hsa-miR-4706 1 0 0
chr19:58574028|58574244 hsa-miR-4710 1 0 0
chr19:58574028|58574244 hsa-miR-4739 1 1 0
chr19:58574028|58574244 hsa-miR-4784 1 0 0
chr19:58574028|58574244 hsa-miR-5090 1 0 0
chr19:58574028|58574244 hsa-miR-5091 1 0 0
chr19:58574028|58574244 hsa-miR-5192 1 0 0
chr19:58574028|58574244 hsa-miR-5698 1 0 0
chr19:58574028|58574244 hsa-miR-5703 1 0 0
chr19:58574028|58574244 hsa-miR-5739 1 1 0
chr19:58574028|58574244 hsa-miR-6076 1 0 0
chr19:58574028|58574244 hsa-miR-6085 1 0 0
chr19:58574028|58574244 hsa-miR-6088 1 0 0
chr19:58574028|58574244 hsa-miR-6090 1 0 0
chr19:58574028|58574244 hsa-miR-6127 1 0 0
chr19:58574028|58574244 hsa-miR-6129 1 0 0
chr19:58574028|58574244 hsa-miR-6133 1 0 0
chr19:58574028|58574244 hsa-miR-7515 1 1 0
chr19:58574028|58574244 hsa-miR-8077 1 0 0
chr19:58574028|58574244 hsa-miR-8085 1 1 0
chr19:58574028|58574244 hsa-miR-12118 1 0 0
chr19:58574028|58574244 hsa-miR-12120 1 0 0
chr19:58574028|58574244 hsa-miR-12122 1 0 0
chr19:58574028|58574244 hsa-miR-12124 1 1 0
chr19:58574028|58574244 hsa-miR-211-3p 1 1 0
chr19:58574028|58574244 hsa-miR-150-3p 1 0 0
chr19:58574028|58574244 hsa-miR-6734-5p 1 0 0
chr19:58574028|58574244 hsa-miR-510-5p 1 0 0
chr19:58574028|58574244 hsa-miR-7106-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6825-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6894-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6799-5p 1 0 0
chr19:58574028|58574244 hsa-miR-8071 1 0 0
chr19:58574028|58574244 hsa-miR-139-3p 1 0 0
chr19:58574028|58574244 hsa-miR-1236-5p 1 0 0
chr19:58574028|58574244 hsa-miR-3622a-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6757-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6873-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6880-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4695-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6744-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6746-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6730-5p 1 0 0
chr19:58574028|58574244 hsa-miR-7154-3p 1 0 0
chr19:58574028|58574244 hsa-miR-4755-3p 1 0 0
chr19:58574028|58574244 hsa-miR-4753-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6806-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6721-5p 1 0 0
chr19:58574028|58574244 hsa-miR-197-5p 1 1 0
chr19:58574028|58574244 hsa-miR-7845-5p 1 1 0
chr19:58574028|58574244 hsa-miR-3151-5p 1 0 0
chr19:58574028|58574244 hsa-miR-1292-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6793-5p 1 0 0
chr19:58574028|58574244 hsa-miR-23a-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6798-5p 1 0 0
chr19:58574028|58574244 hsa-miR-3126-5p 1 1 0
chr19:58574028|58574244 hsa-miR-486-3p 1 0 0
chr19:58574028|58574244 hsa-miR-6760-5p 1 1 0
chr19:58574028|58574244 hsa-miR-3156-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6810-5p 1 0 0
chr19:58574028|58574244 hsa-miR-1226-5p 1 0 0
chr19:58574028|58574244 hsa-miR-185-5p 1 0 0
chr19:58574028|58574244 hsa-miR-92b-5p 1 0 0
chr19:58574028|58574244 hsa-miR-877-5p 1 0 0
chr19:58574028|58574244 hsa-miR-3202 1 1 0
chr19:58574028|58574244 hsa-miR-6834-5p 1 0 0
chr19:58574028|58574244 hsa-miR-149-3p 1 0 0
chr19:58574028|58574244 hsa-miR-6830-5p 1 0 0
chr19:58574028|58574244 hsa-miR-202-3p 1 0 0
chr19:58574028|58574244 hsa-miR-6824-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6800-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6781-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6878-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6892-5p 1 0 0
chr19:58574028|58574244 hsa-miR-5010-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4776-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6864-5p 1 0 0
chr19:58574028|58574244 hsa-miR-423-5p 1 1 0
chr19:58574028|58574244 hsa-miR-3120-3p 1 0 0
chr19:58574028|58574244 hsa-miR-628-3p 1 0 0
chr19:58574028|58574244 hsa-miR-483-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6767-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4520-3p 1 1 0
chr19:58574028|58574244 hsa-miR-196b-3p 1 0 0
chr19:58574028|58574244 hsa-miR-1207-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6778-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6816-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6870-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6893-5p 1 0 0
chr19:58574028|58574244 hsa-miR-1343-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6743-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6756-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6813-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6851-5p 1 0 0
chr19:58574028|58574244 hsa-miR-1249-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6779-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6780a-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6788-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6797-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6808-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6875-5p 1 1 0
chr19:58574028|58574244 hsa-miR-7111-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4728-5p 1 1 0
chr19:58574028|58574244 hsa-miR-5196-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6780b-5p 1 0 0
chr19:58574028|58574244 hsa-miR-10526-3p 1 0 0
chr19:58574028|58574244 hsa-miR-1237-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4632-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4649-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4725-3p 1 0 0
chr19:58574028|58574244 hsa-miR-4726-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4745-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6729-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6735-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6738-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6794-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6858-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6883-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4723-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6831-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6845-5p 1 0 0
chr19:58574028|58574244 hsa-miR-1910-3p 1 0 0
chr19:58574028|58574244 hsa-miR-6511a-5p 1 0 0
chr19:58574028|58574244 hsa-miR-30c-1-3p 1 0 0
chr19:58574028|58574244 hsa-miR-6731-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6758-5p 1 0 0
chr19:58574028|58574244 hsa-miR-4665-5p 1 0 0
chr19:58574028|58574244 hsa-miR-3173-3p 1 0 0
chr19:58574028|58574244 hsa-miR-6876-5p 1 1 0
chr19:58574028|58574244 hsa-miR-6891-5p 1 1 0
chr19:58574028|58574244 hsa-miR-4716-3p 1 1 0
chr19:58574028|58574244 hsa-miR-6750-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6785-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6822-5p 1 0 0
chr19:58574028|58574244 hsa-miR-3529-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6529-5p 1 0 0
chr19:58574028|58574244 hsa-miR-6859-5p 1 0 0
chr19:58574028|58574244 hsa-miR-642a-3p 1 0 0
chr19:58574028|58574244 hsa-miR-3617-5p 1 0 0
chr19:58574028|58574244 hsa-miR-514b-5p 1 1 0
chr19:58574028|58574244 hsa-miR-7853-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:58574028|58574244
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MSLFVLSSFSRSSKTVNPSYCISNFCPFSPFLFLSLSLLVYLLSLDICISCLCEPILRFLLCVSFICI
Nucleotide Sequence CTGTCTCTCTTCGTGCTGTCATCTTTCTCTAGGTCTTCGAAAACTGTCAATCCATCTTACTGTATCTCTAATTTCTGTCCCTTTTCTCCCTTCTTGTTTCTGTCCCTCTCCCTTCTTGTCTACCTCTTGAGTCTGGATATCTGCATTTCTTGTCTCTGTGAACCCATTCTGCGTTTCCTTCTTTGTGTCTCTTTCATCTGCATC
CircID chr19:58574028|58574244
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MSIHLTVSLISVPFLPSCFCPSPFLSTS
Nucleotide Sequence CTGTCAATCCATCTTACTGTATCTCTAATTTCTGTCCCTTTTCTCCCTTCTTGTTTCTGTCCCTCTCCCTTCTTGTCTACCTCTTGA
CircID chr19:58574028|58574244
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MSLFSLLVSVPLPSCLPLESGYLHFLSL
Nucleotide Sequence CTGTCCCTTTTCTCCCTTCTTGTTTCTGTCCCTCTCCCTTCTTGTCTACCTCTTGAGTCTGGATATCTGCATTTCTTGTCTCTGTGA
CircID chr19:58574028|58574244
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MQMKETQRRKRRMGSQRQEMQISRLKR
Nucleotide Sequence ATGCAGATGAAAGAGACACAAAGAAGGAAACGCAGAATGGGTTCACAGAGACAAGAAATGCAGATATCCAGACTCAAGAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab