CircRNA Information

General Information
circRNA Basic Information
CircID chr19:5914654|5915029
Strand -
CircType exon
Host Gene ENSG00000267314.1;
Algorism CIRI2;
Sequence CAGGCGGAGGCAGAGGGTGTGTGCAGGAAGTGGGACCGCAATGGCAGCGGGACGCTGGATCTGGAGGAGTTCCTTCGGGCGCTGCGGGTGAGCCCCCACCTCACAGTCAAGGCGTGTGCCCTGGGCATGGGGCGACAGAGGATGCTGAGATGCGGAGACGGGGACTCCTCCCTAAGAGCTGCTGTTAAGAGGCGCCTGCTGGGGCATACAGCCCCAGTGCTCTGCACAGCGTCTTGGGGGTTTGGGTGTGCTACCCACCACCCCCAGTCACCACCTCCTGTCCCAGCCCCCCATGTCCCAGGCCCGGGAGGCTGTCATCGCAGCTGCATTTGCCAAGCTGGACCGCAGTGGGGACGGCGTCGTGACGGTGGACGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:5914654|5915029 hsa-miR-182-5p 0 0 1
chr19:5914654|5915029 hsa-miR-182-3p 0 0 1
chr19:5914654|5915029 hsa-miR-214-5p 0 0 1
chr19:5914654|5915029 hsa-miR-214-3p 0 0 1
chr19:5914654|5915029 hsa-miR-134-5p 0 0 1
chr19:5914654|5915029 hsa-miR-134-3p 0 0 1
chr19:5914654|5915029 hsa-miR-608 1 1 1
chr19:5914654|5915029 hsa-miR-637 0 1 1
chr19:5914654|5915029 hsa-miR-646 0 0 1
chr19:5914654|5915029 hsa-miR-661 0 0 1
chr19:5914654|5915029 hsa-miR-1301-5p 0 0 1
chr19:5914654|5915029 hsa-miR-1301-3p 0 0 1
chr19:5914654|5915029 hsa-miR-765 0 0 1
chr19:5914654|5915029 hsa-miR-541-5p 0 0 1
chr19:5914654|5915029 hsa-miR-541-3p 0 0 1
chr19:5914654|5915029 hsa-miR-943 0 0 1
chr19:5914654|5915029 hsa-miR-1293 0 0 1
chr19:5914654|5915029 hsa-miR-1294 0 0 1
chr19:5914654|5915029 hsa-miR-1252-5p 0 0 1
chr19:5914654|5915029 hsa-miR-1252-3p 0 0 1
chr19:5914654|5915029 hsa-miR-1321 0 0 1
chr19:5914654|5915029 hsa-miR-1289 0 1 1
chr19:5914654|5915029 hsa-miR-654-5p 0 0 1
chr19:5914654|5915029 hsa-miR-566 0 0 1
chr19:5914654|5915029 hsa-miR-1302 0 0 1
chr19:5914654|5915029 hsa-miR-362-3p 0 0 1
chr19:5914654|5915029 hsa-miR-105 0 0 1
chr19:5914654|5915029 hsa-miR-329 0 0 1
chr19:5914654|5915029 hsa-miR-762 1 1 0
chr19:5914654|5915029 hsa-miR-298 1 0 0
chr19:5914654|5915029 hsa-miR-760 1 0 0
chr19:5914654|5915029 hsa-miR-1200 1 0 0
chr19:5914654|5915029 hsa-miR-1248 1 0 0
chr19:5914654|5915029 hsa-miR-1268a 1 0 0
chr19:5914654|5915029 hsa-miR-1539 1 0 0
chr19:5914654|5915029 hsa-miR-2861 1 1 0
chr19:5914654|5915029 hsa-miR-4298 1 1 0
chr19:5914654|5915029 hsa-miR-3615 1 0 0
chr19:5914654|5915029 hsa-miR-3661 1 0 0
chr19:5914654|5915029 hsa-miR-3665 1 0 0
chr19:5914654|5915029 hsa-miR-3937 1 0 0
chr19:5914654|5915029 hsa-miR-1268b 1 0 0
chr19:5914654|5915029 hsa-miR-4447 0 1 0
chr19:5914654|5915029 hsa-miR-4453 0 1 0
chr19:5914654|5915029 hsa-miR-4492 1 0 0
chr19:5914654|5915029 hsa-miR-4498 1 1 0
chr19:5914654|5915029 hsa-miR-4505 0 1 0
chr19:5914654|5915029 hsa-miR-4507 1 0 0
chr19:5914654|5915029 hsa-miR-1587 1 0 0
chr19:5914654|5915029 hsa-miR-4538 0 1 0
chr19:5914654|5915029 hsa-miR-4656 1 0 0
chr19:5914654|5915029 hsa-miR-4660 0 1 0
chr19:5914654|5915029 hsa-miR-4675 0 1 0
chr19:5914654|5915029 hsa-miR-4739 0 1 0
chr19:5914654|5915029 hsa-miR-4741 1 0 0
chr19:5914654|5915029 hsa-miR-4767 1 0 0
chr19:5914654|5915029 hsa-miR-5047 0 1 0
chr19:5914654|5915029 hsa-miR-5787 1 1 0
chr19:5914654|5915029 hsa-miR-6085 1 0 0
chr19:5914654|5915029 hsa-miR-7974 1 1 0
chr19:5914654|5915029 hsa-miR-8089 1 0 0
chr19:5914654|5915029 hsa-miR-9899 1 0 0
chr19:5914654|5915029 hsa-miR-92a-2-5p 0 1 0
chr19:5914654|5915029 hsa-miR-6840-3p 0 1 0
chr19:5914654|5915029 hsa-miR-4665-3p 1 0 0
chr19:5914654|5915029 hsa-miR-4433a-3p 1 0 0
chr19:5914654|5915029 hsa-miR-486-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6799-5p 1 0 0
chr19:5914654|5915029 hsa-miR-7851-3p 1 0 0
chr19:5914654|5915029 hsa-miR-7114-5p 1 0 0
chr19:5914654|5915029 hsa-miR-7160-5p 1 0 0
chr19:5914654|5915029 hsa-miR-874-5p 0 1 0
chr19:5914654|5915029 hsa-miR-3189-5p 1 1 0
chr19:5914654|5915029 hsa-miR-7845-5p 0 1 0
chr19:5914654|5915029 hsa-miR-185-3p 0 1 0
chr19:5914654|5915029 hsa-miR-6732-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6782-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6882-3p 1 0 0
chr19:5914654|5915029 hsa-miR-4436b-5p 1 0 0
chr19:5914654|5915029 hsa-miR-615-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6786-5p 1 0 0
chr19:5914654|5915029 hsa-miR-7109-5p 0 1 0
chr19:5914654|5915029 hsa-miR-1226-5p 1 0 0
chr19:5914654|5915029 hsa-miR-4793-5p 1 0 0
chr19:5914654|5915029 hsa-miR-3186-5p 1 0 0
chr19:5914654|5915029 hsa-miR-4640-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6753-5p 1 0 0
chr19:5914654|5915029 hsa-miR-5001-3p 0 1 0
chr19:5914654|5915029 hsa-miR-7113-3p 1 0 0
chr19:5914654|5915029 hsa-miR-296-3p 1 0 0
chr19:5914654|5915029 hsa-miR-4690-5p 0 1 0
chr19:5914654|5915029 hsa-miR-92b-5p 0 1 0
chr19:5914654|5915029 hsa-miR-4717-3p 0 1 0
chr19:5914654|5915029 hsa-miR-6749-5p 1 1 0
chr19:5914654|5915029 hsa-miR-6780a-3p 0 1 0
chr19:5914654|5915029 hsa-miR-4787-5p 1 0 0
chr19:5914654|5915029 hsa-miR-4638-3p 1 0 0
chr19:5914654|5915029 hsa-miR-5196-3p 1 1 0
chr19:5914654|5915029 hsa-miR-4446-3p 1 0 0
chr19:5914654|5915029 hsa-miR-1184 0 1 0
chr19:5914654|5915029 hsa-miR-585-5p 0 1 0
chr19:5914654|5915029 hsa-miR-4776-3p 0 1 0
chr19:5914654|5915029 hsa-miR-339-3p 1 0 0
chr19:5914654|5915029 hsa-miR-6720-3p 0 1 0
chr19:5914654|5915029 hsa-miR-4999-5p 0 1 0
chr19:5914654|5915029 hsa-miR-2276-5p 0 1 0
chr19:5914654|5915029 hsa-miR-532-5p 0 1 0
chr19:5914654|5915029 hsa-miR-6865-3p 0 1 0
chr19:5914654|5915029 hsa-miR-1285-5p 1 0 0
chr19:5914654|5915029 hsa-miR-3177-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6789-3p 1 0 0
chr19:5914654|5915029 hsa-miR-3156-3p 0 1 0
chr19:5914654|5915029 hsa-miR-675-3p 0 1 0
chr19:5914654|5915029 hsa-miR-4763-3p 1 1 0
chr19:5914654|5915029 hsa-miR-6775-5p 1 0 0
chr19:5914654|5915029 hsa-miR-5001-5p 0 1 0
chr19:5914654|5915029 hsa-miR-6726-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6743-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6752-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6756-5p 1 1 0
chr19:5914654|5915029 hsa-miR-6803-5p 1 1 0
chr19:5914654|5915029 hsa-miR-6813-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6819-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6842-5p 0 1 0
chr19:5914654|5915029 hsa-miR-6851-5p 1 1 0
chr19:5914654|5915029 hsa-miR-7107-5p 1 0 0
chr19:5914654|5915029 hsa-miR-7110-5p 0 1 0
chr19:5914654|5915029 hsa-miR-6751-5p 1 1 0
chr19:5914654|5915029 hsa-miR-1915-3p 1 1 0
chr19:5914654|5915029 hsa-miR-3620-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6836-5p 0 1 0
chr19:5914654|5915029 hsa-miR-1237-5p 1 0 0
chr19:5914654|5915029 hsa-miR-328-5p 1 1 0
chr19:5914654|5915029 hsa-miR-4745-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6795-5p 1 0 0
chr19:5914654|5915029 hsa-miR-6846-5p 1 1 0
chr19:5914654|5915029 hsa-miR-6848-5p 1 1 0
chr19:5914654|5915029 hsa-miR-6887-5p 1 0 0
chr19:5914654|5915029 hsa-miR-939-5p 1 0 0
chr19:5914654|5915029 hsa-miR-3940-5p 1 0 0
chr19:5914654|5915029 hsa-miR-4664-5p 1 0 0
chr19:5914654|5915029 hsa-miR-3116 1 0 0
chr19:5914654|5915029 hsa-miR-3689d 0 1 0
chr19:5914654|5915029 hsa-miR-6724-5p 1 0 0
chr19:5914654|5915029 hsa-miR-2682-3p 1 1 0
chr19:5914654|5915029 hsa-miR-6893-3p 1 0 0
chr19:5914654|5915029 hsa-miR-6792-3p 1 1 0
chr19:5914654|5915029 hsa-miR-6862-3p 0 1 0
chr19:5914654|5915029 hsa-miR-6829-3p 1 0 0
chr19:5914654|5915029 hsa-miR-4756-5p 0 1 0
chr19:5914654|5915029 hsa-miR-6783-3p 1 0 0
chr19:5914654|5915029 hsa-miR-4691-5p 0 1 0
chr19:5914654|5915029 hsa-miR-33b-3p 1 0 0
chr19:5914654|5915029 hsa-miR-6781-3p 0 1 0
chr19:5914654|5915029 hsa-miR-6827-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:5914654|5915029
ORF Type ORF1
Protein Length 107
Nucleotide Length 321
Protein Sequence MDLEEFLRALRVSPHLTVKACALGMGRQRMLRCGDGDSSLRAAVKRRLLGHTAPVLCTASWGFGCATHHPQSPPPVPAPHVPGPGGCHRSCICQAGPQWGRRRDGGR
Nucleotide Sequence CTGGATCTGGAGGAGTTCCTTCGGGCGCTGCGGGTGAGCCCCCACCTCACAGTCAAGGCGTGTGCCCTGGGCATGGGGCGACAGAGGATGCTGAGATGCGGAGACGGGGACTCCTCCCTAAGAGCTGCTGTTAAGAGGCGCCTGCTGGGGCATACAGCCCCAGTGCTCTGCACAGCGTCTTGGGGGTTTGGGTGTGCTACCCACCACCCCCAGTCACCACCTCCTGTCCCAGCCCCCCATGTCCCAGGCCCGGGAGGCTGTCATCGCAGCTGCATTTGCCAAGCTGGACCGCAGTGGGGACGGCGTCGTGACGGTGGACGA
CircID chr19:5914654|5915029
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MLLRGACWGIQPQCSAQRLGGLGVLPTTPSHHLLSQPPMSQAREAVIAAAFAKLDRSGDGVVTVDD
Nucleotide Sequence CTGCTGTTAAGAGGCGCCTGCTGGGGCATACAGCCCCAGTGCTCTGCACAGCGTCTTGGGGGTTTGGGTGTGCTACCCACCACCCCCAGTCACCACCTCCTGTCCCAGCCCCCCATGTCCCAGGCCCGGGAGGCTGTCATCGCAGCTGCATTTGCCAAGCTGGACCGCAGTGGGGACGGCGTCGTGACGGTGGACGAC
CircID chr19:5914654|5915029
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MHSVLGVWVCYPPPPVTTSCPSPPCPRPGRLSSQLHLPSWTAVGTAS
Nucleotide Sequence CTGCACAGCGTCTTGGGGGTTTGGGTGTGCTACCCACCACCCCCAGTCACCACCTCCTGTCCCAGCCCCCCATGTCCCAGGCCCGGGAGGCTGTCATCGCAGCTGCATTTGCCAAGCTGGACCGCAGTGGGGACGGCGTCGTGA
CircID chr19:5914654|5915029
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MRSSLANAAAMTASRAWDMGGWDRRW
Nucleotide Sequence CTGCGGTCCAGCTTGGCAAATGCAGCTGCGATGACAGCCTCCCGGGCCTGGGACATGGGGGGCTGGGACAGGAGGTGGTGA
CircID chr19:5914654|5915029
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MGVVGSTPKPPRRCAEHWGCMPQQAPLNSSS
Nucleotide Sequence CTGGGGGTGGTGGGTAGCACACCCAAACCCCCAAGACGCTGTGCAGAGCACTGGGGCTGTATGCCCCAGCAGGCGCCTCTTAACAGCAGCTCTTAG
CircID chr19:5914654|5915029
ORF Type ORF6
Protein Length 46
Nucleotide Length 138
Protein Sequence MSPHAQGTRLDCEVGAHPQRPKELLQIQRPAAIAVPLPAHTLCLRL
Nucleotide Sequence CTGTCGCCCCATGCCCAGGGCACACGCCTTGACTGTGAGGTGGGGGCTCACCCGCAGCGCCCGAAGGAACTCCTCCAGATCCAGCGTCCCGCTGCCATTGCGGTCCCACTTCCTGCACACACCCTCTGCCTCCGCCTG
CircID chr19:5914654|5915029
ORF Type ORF7
Protein Length 42
Nucleotide Length 126
Protein Sequence MPRAHALTVRWGLTRSARRNSSRSSVPLPLRSHFLHTPSASA
Nucleotide Sequence ATGCCCAGGGCACACGCCTTGACTGTGAGGTGGGGGCTCACCCGCAGCGCCCGAAGGAACTCCTCCAGATCCAGCGTCCCGCTGCCATTGCGGTCCCACTTCCTGCACACACCCTCTGCCTCCGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab