CircRNA Information

General Information
circRNA Basic Information
CircID chr19:5916348|5916667
Strand -
CircType exon
Host Gene ENSG00000031823.13;
Algorism CIRI2;
Sequence CTAGAGGTGTGGACGGCACAGCTGCAGGAGGCCTTCTCTTAACCCTCCGAGAGTGGGACTGGGAGATTTCCTCTGAAGTCCCAAAGAGGCCCTGTGCCCAGGGGACCTCCTCCTCGGCCTCCCAGGTGGGTGGTGCAAGCTGGCTCTTGGCCATGCTCCAGGCTCGGGTGGGCACAGGCGTCCACTCCAGTGTGCTGCGTGCTTGTGAGACTGCCTGTTCTGGGACCAGCCCCTGGGCTCTTCCACCAAGATTTGGTGAGGGTCCCCCTCTGCCTCTCACAGAAGCCCCTGGCCCTGGACTGTCCTGGGGGCAGGGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:5916348|5916667 hsa-miR-122-5p 0 0 1
chr19:5916348|5916667 hsa-miR-122-3p 0 0 1
chr19:5916348|5916667 hsa-miR-150-5p 0 0 1
chr19:5916348|5916667 hsa-miR-150-3p 0 0 1
chr19:5916348|5916667 hsa-miR-335-5p 0 0 1
chr19:5916348|5916667 hsa-miR-335-3p 0 0 1
chr19:5916348|5916667 hsa-miR-612 1 1 1
chr19:5916348|5916667 hsa-miR-1301-5p 0 0 1
chr19:5916348|5916667 hsa-miR-1301-3p 0 0 1
chr19:5916348|5916667 hsa-miR-765 0 0 1
chr19:5916348|5916667 hsa-miR-1228-5p 0 0 1
chr19:5916348|5916667 hsa-miR-1228-3p 0 0 1
chr19:5916348|5916667 hsa-miR-513b-5p 0 0 1
chr19:5916348|5916667 hsa-miR-513b-3p 0 0 1
chr19:5916348|5916667 hsa-miR-1827 0 0 1
chr19:5916348|5916667 hsa-miR-615-3p 0 1 1
chr19:5916348|5916667 hsa-miR-532-3p 0 0 1
chr19:5916348|5916667 hsa-miR-767-5p 0 0 1
chr19:5916348|5916667 hsa-miR-1184 0 0 1
chr19:5916348|5916667 hsa-miR-361-3p 0 0 1
chr19:5916348|5916667 hsa-miR-1224-3p 0 0 1
chr19:5916348|5916667 hsa-miR-331-3p 0 1 1
chr19:5916348|5916667 hsa-miR-324-3p 0 0 1
chr19:5916348|5916667 hsa-miR-1302 0 0 1
chr19:5916348|5916667 hsa-miR-455-3p 0 1 1
chr19:5916348|5916667 hsa-miR-342-3p 0 0 1
chr19:5916348|5916667 hsa-miR-151-5p 0 0 1
chr19:5916348|5916667 hsa-miR-220b 0 0 1
chr19:5916348|5916667 hsa-miR-220c 0 0 1
chr19:5916348|5916667 hsa-miR-7 0 0 1
chr19:5916348|5916667 hsa-miR-9 0 0 1
chr19:5916348|5916667 hsa-miR-1285 0 0 1
chr19:5916348|5916667 hsa-miR-1254 0 0 1
chr19:5916348|5916667 hsa-miR-762 0 1 0
chr19:5916348|5916667 hsa-miR-3122 0 1 0
chr19:5916348|5916667 hsa-miR-548s 0 1 0
chr19:5916348|5916667 hsa-miR-4281 1 0 0
chr19:5916348|5916667 hsa-miR-4292 0 1 0
chr19:5916348|5916667 hsa-miR-3615 1 0 0
chr19:5916348|5916667 hsa-miR-3918 0 1 0
chr19:5916348|5916667 hsa-miR-4436a 0 1 0
chr19:5916348|5916667 hsa-miR-4493 0 1 0
chr19:5916348|5916667 hsa-miR-4498 0 1 0
chr19:5916348|5916667 hsa-miR-4512 0 1 0
chr19:5916348|5916667 hsa-miR-4688 0 1 0
chr19:5916348|5916667 hsa-miR-4692 0 1 0
chr19:5916348|5916667 hsa-miR-4741 1 0 0
chr19:5916348|5916667 hsa-miR-5047 0 1 0
chr19:5916348|5916667 hsa-miR-6077 0 1 0
chr19:5916348|5916667 hsa-miR-6081 1 0 0
chr19:5916348|5916667 hsa-miR-6085 0 1 0
chr19:5916348|5916667 hsa-miR-6860 0 1 0
chr19:5916348|5916667 hsa-miR-8064 0 1 0
chr19:5916348|5916667 hsa-miR-8089 1 0 0
chr19:5916348|5916667 hsa-miR-6840-3p 0 1 0
chr19:5916348|5916667 hsa-miR-7851-3p 0 1 0
chr19:5916348|5916667 hsa-miR-6089 1 1 0
chr19:5916348|5916667 hsa-miR-3192-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6721-5p 1 0 0
chr19:5916348|5916667 hsa-miR-6783-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6770-5p 0 1 0
chr19:5916348|5916667 hsa-miR-2467-3p 0 1 0
chr19:5916348|5916667 hsa-miR-6765-3p 0 1 0
chr19:5916348|5916667 hsa-miR-3194-5p 1 0 0
chr19:5916348|5916667 hsa-miR-30b-3p 0 1 0
chr19:5916348|5916667 hsa-miR-6858-3p 0 1 0
chr19:5916348|5916667 hsa-miR-4713-5p 0 1 0
chr19:5916348|5916667 hsa-miR-615-5p 0 1 0
chr19:5916348|5916667 hsa-miR-4640-5p 1 1 0
chr19:5916348|5916667 hsa-miR-6753-5p 1 0 0
chr19:5916348|5916667 hsa-miR-296-3p 1 1 0
chr19:5916348|5916667 hsa-miR-6749-5p 1 0 0
chr19:5916348|5916667 hsa-miR-6789-5p 1 0 0
chr19:5916348|5916667 hsa-miR-339-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6895-5p 0 1 0
chr19:5916348|5916667 hsa-miR-423-5p 0 1 0
chr19:5916348|5916667 hsa-miR-7152-3p 0 1 0
chr19:5916348|5916667 hsa-miR-6811-3p 0 1 0
chr19:5916348|5916667 hsa-miR-6889-3p 0 1 0
chr19:5916348|5916667 hsa-miR-5000-3p 0 1 0
chr19:5916348|5916667 hsa-miR-4773 0 1 0
chr19:5916348|5916667 hsa-miR-6752-3p 0 1 0
chr19:5916348|5916667 hsa-miR-1914-5p 1 1 0
chr19:5916348|5916667 hsa-miR-493-3p 0 1 0
chr19:5916348|5916667 hsa-miR-6768-3p 0 1 0
chr19:5916348|5916667 hsa-miR-4762-5p 0 1 0
chr19:5916348|5916667 hsa-miR-1233-5p 0 1 0
chr19:5916348|5916667 hsa-miR-1273h-5p 0 1 0
chr19:5916348|5916667 hsa-miR-4763-3p 1 0 0
chr19:5916348|5916667 hsa-miR-6778-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6775-5p 1 0 0
chr19:5916348|5916667 hsa-miR-5001-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6813-5p 0 1 0
chr19:5916348|5916667 hsa-miR-11181-3p 0 1 0
chr19:5916348|5916667 hsa-miR-1249-5p 1 0 0
chr19:5916348|5916667 hsa-miR-5189-5p 0 1 0
chr19:5916348|5916667 hsa-miR-328-5p 1 1 0
chr19:5916348|5916667 hsa-miR-449c-5p 0 1 0
chr19:5916348|5916667 hsa-miR-4649-5p 1 0 0
chr19:5916348|5916667 hsa-miR-4685-5p 1 1 0
chr19:5916348|5916667 hsa-miR-4726-5p 1 1 0
chr19:5916348|5916667 hsa-miR-6735-5p 1 0 0
chr19:5916348|5916667 hsa-miR-6738-5p 1 0 0
chr19:5916348|5916667 hsa-miR-6846-5p 1 0 0
chr19:5916348|5916667 hsa-miR-1266-5p 0 1 0
chr19:5916348|5916667 hsa-miR-34b-5p 0 1 0
chr19:5916348|5916667 hsa-miR-365a-5p 0 1 0
chr19:5916348|5916667 hsa-miR-365b-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6511a-5p 0 1 0
chr19:5916348|5916667 hsa-miR-5008-3p 0 1 0
chr19:5916348|5916667 hsa-miR-3116 0 1 0
chr19:5916348|5916667 hsa-miR-2682-3p 1 0 0
chr19:5916348|5916667 hsa-miR-6791-5p 1 1 0
chr19:5916348|5916667 hsa-miR-4757-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6837-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6529-3p 0 1 0
chr19:5916348|5916667 hsa-miR-6884-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6764-5p 0 1 0
chr19:5916348|5916667 hsa-miR-497-5p 0 1 0
chr19:5916348|5916667 hsa-miR-6874-3p 1 0 0
chr19:5916348|5916667 hsa-miR-5588-3p 0 1 0
chr19:5916348|5916667 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:5916348|5916667
ORF Type ORF1
Protein Length 82
Nucleotide Length 246
Protein Sequence MKSQRGPVPRGPPPRPPRWVVQAGSWPCSRLGWAQASTPVCCVLVRLPVLGPAPGLFHQDLVRVPLCLSQKPLALDCPGGRD
Nucleotide Sequence CTGAAGTCCCAAAGAGGCCCTGTGCCCAGGGGACCTCCTCCTCGGCCTCCCAGGTGGGTGGTGCAAGCTGGCTCTTGGCCATGCTCCAGGCTCGGGTGGGCACAGGCGTCCACTCCAGTGTGCTGCGTGCTTGTGAGACTGCCTGTTCTGGGACCAGCCCCTGGGCTCTTCCACCAAGATTTGGTGAGGGTCCCCCTCTGCCTCTCACAGAAGCCCCTGGCCCTGGACTGTCCTGGGGGCAGGGAC
CircID chr19:5916348|5916667
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MCPGDLLLGLPGGWCKLALGHAPGSGGHRRPLQCAACL
Nucleotide Sequence CTGTGCCCAGGGGACCTCCTCCTCGGCCTCCCAGGTGGGTGGTGCAAGCTGGCTCTTGGCCATGCTCCAGGCTCGGGTGGGCACAGGCGTCCACTCCAGTGTGCTGCGTGCTTGTGA
CircID chr19:5916348|5916667
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MAMLQARVGTGVHSSVLRACETACSGTSPWALPPRFGEGPPLPLTEAPGPGLSWGQGH
Nucleotide Sequence TTGGCCATGCTCCAGGCTCGGGTGGGCACAGGCGTCCACTCCAGTGTGCTGCGTGCTTGTGAGACTGCCTGTTCTGGGACCAGCCCCTGGGCTCTTCCACCAAGATTTGGTGAGGGTCCCCCTCTGCCTCTCACAGAAGCCCCTGGCCCTGGACTGTCCTGGGGGCAGGGACAC
CircID chr19:5916348|5916667
ORF Type ORF4
Protein Length 91
Nucleotide Length 276
Protein Sequence MPPGQSRARGFCERQRGTLTKSWWKSPGAGPRTGSLTSTQHTGVDACAHPSLEHGQEPACTTHLGGRGGGPLGTGPLWDFRGNLPVPLSEG
Nucleotide Sequence CTGCCCCCAGGACAGTCCAGGGCCAGGGGCTTCTGTGAGAGGCAGAGGGGGACCCTCACCAAATCTTGGTGGAAGAGCCCAGGGGCTGGTCCCAGAACAGGCAGTCTCACAAGCACGCAGCACACTGGAGTGGACGCCTGTGCCCACCCGAGCCTGGAGCATGGCCAAGAGCCAGCTTGCACCACCCACCTGGGAGGCCGAGGAGGAGGTCCCCTGGGCACAGGGCCTCTTTGGGACTTCAGAGGAAATCTCCCAGTCCCACTCTCGGAGGGTTAA
CircID chr19:5916348|5916667
ORF Type ORF5
Protein Length 76
Nucleotide Length 228
Protein Sequence MVPEQAVSQARSTLEWTPVPTRAWSMAKSQLAPPTWEAEEEVPWAQGLFGTSEEISQSHSRRVKRRPPAAVPSTPL
Nucleotide Sequence CTGGTCCCAGAACAGGCAGTCTCACAAGCACGCAGCACACTGGAGTGGACGCCTGTGCCCACCCGAGCCTGGAGCATGGCCAAGAGCCAGCTTGCACCACCCACCTGGGAGGCCGAGGAGGAGGTCCCCTGGGCACAGGGCCTCTTTGGGACTTCAGAGGAAATCTCCCAGTCCCACTCTCGGAGGGTTAAGAGAAGGCCTCCTGCAGCTGTGCCGTCCACACCTCTA
CircID chr19:5916348|5916667
ORF Type ORF6
Protein Length 82
Nucleotide Length 249
Protein Sequence MVEEPRGWSQNRQSHKHAAHWSGRLCPPEPGAWPRASLHHPPGRPRRRSPGHRASLGLQRKSPSPTLGGLREGLLQLCRPHL
Nucleotide Sequence TTGGTGGAAGAGCCCAGGGGCTGGTCCCAGAACAGGCAGTCTCACAAGCACGCAGCACACTGGAGTGGACGCCTGTGCCCACCCGAGCCTGGAGCATGGCCAAGAGCCAGCTTGCACCACCCACCTGGGAGGCCGAGGAGGAGGTCCCCTGGGCACAGGGCCTCTTTGGGACTTCAGAGGAAATCTCCCAGTCCCACTCTCGGAGGGTTAAGAGAAGGCCTCCTGCAGCTGTGCCGTCCACACCTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab