CircRNA Information

General Information
circRNA Basic Information
CircID chr19:6697468|6697705
Strand -
CircType exon
Host Gene ENSG00000125730.15;
Algorism CIRI2;
Sequence TTGGGGGGGATGGTTACGGTCTGCTGGTGACGCCTCTTGGTGGTGGCCAGGCTGCAGAAGGCTGGATTGTGGAGTAGTTCCACCCTCACCTGCCAGGGAGAGAAAGGATCCGGGCAAGTGTGTGTGCAACAGGCTACCTACCCCCTGGCAGCCTCCAAGAAGCCTCTGCCACCCCGGGACCCACCTTGAGCTCTTGGTTCTGCCGGTAATTGTAGAGAACGGCTCGGATTTCCACCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:6697468|6697705 hsa-miR-335-5p 0 0 1
chr19:6697468|6697705 hsa-miR-335-3p 0 0 1
chr19:6697468|6697705 hsa-miR-196b-5p 0 0 1
chr19:6697468|6697705 hsa-miR-196b-3p 0 0 1
chr19:6697468|6697705 hsa-miR-432-5p 0 0 1
chr19:6697468|6697705 hsa-miR-432-3p 0 0 1
chr19:6697468|6697705 hsa-miR-588 0 0 1
chr19:6697468|6697705 hsa-miR-596 1 0 1
chr19:6697468|6697705 hsa-miR-603 0 0 1
chr19:6697468|6697705 hsa-miR-606 0 0 1
chr19:6697468|6697705 hsa-miR-608 1 0 1
chr19:6697468|6697705 hsa-miR-634 0 0 1
chr19:6697468|6697705 hsa-miR-650 0 0 1
chr19:6697468|6697705 hsa-miR-922 0 0 1
chr19:6697468|6697705 hsa-miR-1226-5p 0 0 1
chr19:6697468|6697705 hsa-miR-1226-3p 0 0 1
chr19:6697468|6697705 hsa-miR-1237-5p 0 0 1
chr19:6697468|6697705 hsa-miR-1237-3p 0 0 1
chr19:6697468|6697705 hsa-miR-1205 0 0 1
chr19:6697468|6697705 hsa-miR-125a-3p 0 1 1
chr19:6697468|6697705 hsa-miR-127-3p 0 1 1
chr19:6697468|6697705 hsa-miR-615-3p 0 0 1
chr19:6697468|6697705 hsa-miR-1283 0 0 1
chr19:6697468|6697705 hsa-miR-485-5p 0 0 1
chr19:6697468|6697705 hsa-miR-1184 0 0 1
chr19:6697468|6697705 hsa-miR-508-5p 0 0 1
chr19:6697468|6697705 hsa-miR-501-5p 0 1 1
chr19:6697468|6697705 hsa-miR-1207-5p 1 0 1
chr19:6697468|6697705 hsa-miR-220b 0 0 1
chr19:6697468|6697705 hsa-miR-544 0 0 1
chr19:6697468|6697705 hsa-miR-768-5p 0 0 1
chr19:6697468|6697705 hsa-miR-196a 0 0 1
chr19:6697468|6697705 hsa-miR-3137 1 0 0
chr19:6697468|6697705 hsa-miR-3141 1 0 0
chr19:6697468|6697705 hsa-miR-3188 0 1 0
chr19:6697468|6697705 hsa-miR-3196 1 0 0
chr19:6697468|6697705 hsa-miR-4259 1 0 0
chr19:6697468|6697705 hsa-miR-4281 1 1 0
chr19:6697468|6697705 hsa-miR-3665 0 1 0
chr19:6697468|6697705 hsa-miR-4449 1 1 0
chr19:6697468|6697705 hsa-miR-4454 1 0 0
chr19:6697468|6697705 hsa-miR-4530 0 1 0
chr19:6697468|6697705 hsa-miR-4651 1 1 0
chr19:6697468|6697705 hsa-miR-4654 1 0 0
chr19:6697468|6697705 hsa-miR-5093 1 0 0
chr19:6697468|6697705 hsa-miR-6086 1 0 0
chr19:6697468|6697705 hsa-miR-7150 0 1 0
chr19:6697468|6697705 hsa-miR-8073 0 1 0
chr19:6697468|6697705 hsa-miR-12114 1 1 0
chr19:6697468|6697705 hsa-miR-103a-2-5p 0 1 0
chr19:6697468|6697705 hsa-miR-6765-5p 0 1 0
chr19:6697468|6697705 hsa-miR-6720-5p 0 1 0
chr19:6697468|6697705 hsa-miR-6721-5p 0 1 0
chr19:6697468|6697705 hsa-miR-4655-5p 0 1 0
chr19:6697468|6697705 hsa-miR-138-1-3p 0 1 0
chr19:6697468|6697705 hsa-miR-6849-3p 0 1 0
chr19:6697468|6697705 hsa-miR-3180-3p 1 0 0
chr19:6697468|6697705 hsa-miR-6793-5p 1 1 0
chr19:6697468|6697705 hsa-miR-6732-5p 1 1 0
chr19:6697468|6697705 hsa-miR-3190-3p 1 0 0
chr19:6697468|6697705 hsa-miR-23a-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6798-5p 1 1 0
chr19:6697468|6697705 hsa-miR-6782-5p 1 0 0
chr19:6697468|6697705 hsa-miR-5006-5p 0 1 0
chr19:6697468|6697705 hsa-miR-6884-3p 1 0 0
chr19:6697468|6697705 hsa-miR-615-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6835-5p 0 1 0
chr19:6697468|6697705 hsa-miR-7113-3p 1 0 0
chr19:6697468|6697705 hsa-miR-296-3p 1 0 0
chr19:6697468|6697705 hsa-let-7d-5p 0 1 0
chr19:6697468|6697705 hsa-miR-6823-5p 1 0 0
chr19:6697468|6697705 hsa-miR-4787-5p 1 0 0
chr19:6697468|6697705 hsa-miR-3614-3p 0 1 0
chr19:6697468|6697705 hsa-miR-3670 0 1 0
chr19:6697468|6697705 hsa-miR-6729-3p 0 1 0
chr19:6697468|6697705 hsa-miR-10400-5p 1 0 0
chr19:6697468|6697705 hsa-miR-4763-3p 1 0 0
chr19:6697468|6697705 hsa-miR-6769b-5p 1 1 0
chr19:6697468|6697705 hsa-miR-6865-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6893-5p 1 1 0
chr19:6697468|6697705 hsa-miR-6737-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6752-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6754-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6756-5p 1 1 0
chr19:6697468|6697705 hsa-miR-6769a-5p 1 1 0
chr19:6697468|6697705 hsa-miR-6803-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6815-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6842-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6851-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6808-5p 0 1 0
chr19:6697468|6697705 hsa-miR-328-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6846-5p 1 1 0
chr19:6697468|6697705 hsa-miR-6791-5p 1 0 0
chr19:6697468|6697705 hsa-miR-6512-3p 0 1 0
chr19:6697468|6697705 hsa-miR-6884-5p 0 1 0
chr19:6697468|6697705 hsa-miR-4701-5p 0 1 0
chr19:6697468|6697705 hsa-miR-1234-3p 0 1 0
chr19:6697468|6697705 hsa-miR-6500-5p 0 1 0
chr19:6697468|6697705 hsa-miR-363-5p 0 1 0
chr19:6697468|6697705 hsa-miR-103a-1-5p 0 1 0
chr19:6697468|6697705 hsa-miR-216b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:6697468|6697705
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MVVARLQKAGLWSSSTLTCQGEKGSGQVCVQQATYPLAASKKPLPPRDPP
Nucleotide Sequence TTGGTGGTGGCCAGGCTGCAGAAGGCTGGATTGTGGAGTAGTTCCACCCTCACCTGCCAGGGAGAGAAAGGATCCGGGCAAGTGTGTGTGCAACAGGCTACCTACCCCCTGGCAGCCTCCAAGAAGCCTCTGCCACCCCGGGACCCACCTTGA
CircID chr19:6697468|6697705
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MDCGVVPPSPARERKDPGKCVCNRLPTPWQPPRSLCHPGTHLELLVLPVIVENGSDFHL
Nucleotide Sequence CTGGATTGTGGAGTAGTTCCACCCTCACCTGCCAGGGAGAGAAAGGATCCGGGCAAGTGTGTGTGCAACAGGCTACCTACCCCCTGGCAGCCTCCAAGAAGCCTCTGCCACCCCGGGACCCACCTTGAGCTCTTGGTTCTGCCGGTAATTGTAGAGAACGGCTCGGATTTCCACCTG
CircID chr19:6697468|6697705
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MPGRERIRASVCATGYLPPGSLQEASATPGPTLSSWFCR
Nucleotide Sequence CTGCCAGGGAGAGAAAGGATCCGGGCAAGTGTGTGTGCAACAGGCTACCTACCCCCTGGCAGCCTCCAAGAAGCCTCTGCCACCCCGGGACCCACCTTGAGCTCTTGGTTCTGCCGGTAA
CircID chr19:6697468|6697705
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MLHTHLPGSFLSLAGEGGTTPQSSLLQPGHHQEASPADRNHPPQ
Nucleotide Sequence CTGTTGCACACACACTTGCCCGGATCCTTTCTCTCCCTGGCAGGTGAGGGTGGAACTACTCCACAATCCAGCCTTCTGCAGCCTGGCCACCACCAAGAGGCGTCACCAGCAGACCGTAACCATCCCCCCCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab