CircRNA Information

General Information
circRNA Basic Information
CircID chr19:682478|682672
Strand +
CircType exon
Host Gene ENSG00000070404.8;
Algorism CIRI2;
Sequence GCTGGGTGGTTCTGTGGCCAAGCACAGCCCGTGTCAGGAGCACAGGCCGTGCCCTTTCCCAGGGGGCACACTGGGCATTTCTCAATGGCCTTCACAGGACGCAAAGGGGCACACAGAGGCAGTGGGGAAGCTGGAGTTCTTGGGCTGGCAGGGAATGGTGGCAGCCTTCTTGGCCTTCATGAAGGGCCTGGCTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:682478|682672 hsa-miR-205-5p 0 0 1
chr19:682478|682672 hsa-miR-205-3p 0 0 1
chr19:682478|682672 hsa-miR-433-5p 0 0 1
chr19:682478|682672 hsa-miR-433-3p 0 0 1
chr19:682478|682672 hsa-miR-539-5p 0 0 1
chr19:682478|682672 hsa-miR-539-3p 0 0 1
chr19:682478|682672 hsa-miR-564 0 0 1
chr19:682478|682672 hsa-miR-580-5p 0 0 1
chr19:682478|682672 hsa-miR-580-3p 0 0 1
chr19:682478|682672 hsa-miR-588 0 0 1
chr19:682478|682672 hsa-miR-602 0 0 1
chr19:682478|682672 hsa-miR-636 1 1 1
chr19:682478|682672 hsa-miR-648 0 0 1
chr19:682478|682672 hsa-miR-766-5p 0 0 1
chr19:682478|682672 hsa-miR-766-3p 0 0 1
chr19:682478|682672 hsa-miR-1234-3p 0 0 1
chr19:682478|682672 hsa-miR-1202 0 0 1
chr19:682478|682672 hsa-miR-1234 0 0 1
chr19:682478|682672 hsa-miR-199a-5p 0 0 1
chr19:682478|682672 hsa-miR-508-5p 0 0 1
chr19:682478|682672 hsa-miR-331-3p 0 0 1
chr19:682478|682672 hsa-miR-199b-5p 0 0 1
chr19:682478|682672 hsa-miR-1274a 0 0 1
chr19:682478|682672 hsa-miR-1300 0 0 1
chr19:682478|682672 hsa-miR-218 0 0 1
chr19:682478|682672 hsa-miR-365 0 0 1
chr19:682478|682672 hsa-miR-892a 0 1 0
chr19:682478|682672 hsa-miR-4313 0 1 0
chr19:682478|682672 hsa-miR-3907 1 0 0
chr19:682478|682672 hsa-miR-4462 0 1 0
chr19:682478|682672 hsa-miR-4479 0 1 0
chr19:682478|682672 hsa-miR-3972 0 1 0
chr19:682478|682672 hsa-miR-4675 0 1 0
chr19:682478|682672 hsa-miR-5685 0 1 0
chr19:682478|682672 hsa-miR-6126 0 1 0
chr19:682478|682672 hsa-miR-7974 0 1 0
chr19:682478|682672 hsa-miR-4755-3p 0 1 0
chr19:682478|682672 hsa-miR-145-5p 0 1 0
chr19:682478|682672 hsa-miR-218-5p 0 1 0
chr19:682478|682672 hsa-miR-6765-3p 1 0 0
chr19:682478|682672 hsa-miR-6735-3p 1 1 0
chr19:682478|682672 hsa-miR-6882-3p 1 0 0
chr19:682478|682672 hsa-miR-6772-3p 1 1 0
chr19:682478|682672 hsa-miR-1226-5p 1 0 0
chr19:682478|682672 hsa-miR-204-3p 0 1 0
chr19:682478|682672 hsa-miR-4715-3p 1 1 0
chr19:682478|682672 hsa-miR-7113-3p 1 0 0
chr19:682478|682672 hsa-miR-4446-5p 1 0 0
chr19:682478|682672 hsa-miR-339-5p 1 1 0
chr19:682478|682672 hsa-miR-6811-3p 0 1 0
chr19:682478|682672 hsa-miR-6752-3p 1 1 0
chr19:682478|682672 hsa-miR-6782-3p 1 0 0
chr19:682478|682672 hsa-miR-6773-3p 0 1 0
chr19:682478|682672 hsa-miR-4717-5p 0 1 0
chr19:682478|682672 hsa-miR-6890-3p 1 1 0
chr19:682478|682672 hsa-miR-4763-3p 1 0 0
chr19:682478|682672 hsa-miR-5001-5p 1 0 0
chr19:682478|682672 hsa-miR-3620-5p 0 1 0
chr19:682478|682672 hsa-miR-5008-3p 1 1 0
chr19:682478|682672 hsa-miR-6877-3p 1 0 0
chr19:682478|682672 hsa-miR-324-3p 1 1 0
chr19:682478|682672 hsa-miR-4646-5p 0 1 0
chr19:682478|682672 hsa-miR-6791-5p 0 1 0
chr19:682478|682672 hsa-miR-4722-3p 1 1 0
chr19:682478|682672 hsa-miR-6727-3p 0 1 0
chr19:682478|682672 hsa-miR-4757-5p 1 0 0
chr19:682478|682672 hsa-miR-4701-5p 0 1 0
chr19:682478|682672 hsa-miR-6737-3p 0 1 0
chr19:682478|682672 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:682478|682672
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MAFTGRKGAHRGSGEAGVLGLAGNGGSLLGLHEGPGL
Nucleotide Sequence ATGGCCTTCACAGGACGCAAAGGGGCACACAGAGGCAGTGGGGAAGCTGGAGTTCTTGGGCTGGCAGGGAATGGTGGCAGCCTTCTTGGCCTTCATGAAGGGCCTGGCTTG
CircID chr19:682478|682672
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence LGGSVAKHSPCQEHRPCPFPGGTLGISQWPSQDAKGHTEAVGKLEFLGWQGMVAAFLAFMKGLA
Nucleotide Sequence CTGGGTGGTTCTGTGGCCAAGCACAGCCCGTGTCAGGAGCACAGGCCGTGCCCTTTCCCAGGGGGCACACTGGGCATTTCTCAATGGCCTTCACAGGACGCAAAGGGGCACACAGAGGCAGTGGGGAAGCTGGAGTTCTTGGGCTGGCAGGGAATGGTGGCAGCCTTCTTGGCCTTCATGAAGGGCCTGGCT
CircID chr19:682478|682672
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MWPSTARVRSTGRALSQGAHWAFLNGLHRTQRGTQRQWGSWSSWAGREWWQPSWPS
Nucleotide Sequence CTGTGGCCAAGCACAGCCCGTGTCAGGAGCACAGGCCGTGCCCTTTCCCAGGGGGCACACTGGGCATTTCTCAATGGCCTTCACAGGACGCAAAGGGGCACACAGAGGCAGTGGGGAAGCTGGAGTTCTTGGGCTGGCAGGGAATGGTGGCAGCCTTCTTGGCCTTCATGA
CircID chr19:682478|682672
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MKAKKAATIPCQPKNSSFPTASVCPFASCEGH
Nucleotide Sequence ATGAAGGCCAAGAAGGCTGCCACCATTCCCTGCCAGCCCAAGAACTCCAGCTTCCCCACTGCCTCTGTGTGCCCCTTTGCGTCCTGTGAAGGCCATTGA
CircID chr19:682478|682672
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence MPPFPASPRTPASPLPLCAPLRPVKAIEKCPVCPLGKGTACAPDTGCAWPQNHP
Nucleotide Sequence CTGCCACCATTCCCTGCCAGCCCAAGAACTCCAGCTTCCCCACTGCCTCTGTGTGCCCCTTTGCGTCCTGTGAAGGCCATTGAGAAATGCCCAGTGTGCCCCCTGGGAAAGGGCACGGCCTGTGCTCCTGACACGGGCTGTGCTTGGCCACAGAACCACCCA
CircID chr19:682478|682672
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MRNAQCAPWERARPVLLTRAVLGHRTTQ
Nucleotide Sequence TTGAGAAATGCCCAGTGTGCCCCCTGGGAAAGGGCACGGCCTGTGCTCCTGACACGGGCTGTGCTTGGCCACAGAACCACCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab