CircRNA Information

General Information
circRNA Basic Information
CircID chr19:6833248|6833586
Strand +
CircType exon
Host Gene ENSG00000141968.6;
Algorism CIRI2;
Sequence ACTCCTTGTGTGCAGATGCCCGGCACCGATGGCAGCGGTAGCCCTGATAGAAGGTACCTCTGAGATGCAGGGAACACATAAAGAAGAGCGAGTGACCTTTACAGACAGGGCCAAATATTCTGCTAAAAACATAAAGGGACCCCTTGGGTTCTCTTTAGATCAGGAGAGTGACGGAGAAGCAGAAGATCAAAGTAGGGACTCCCCCATCTCCCAATTTAGGGAACCAATTACTAGGCCATCTTCTCTAGCAAGGAACTGATGACCAAGTCCGGTATGCAGGACCCTCCTCCCAGATTCTCACCTAAGCAGCATCTGACAGGCCTTGCAGGATGTGGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:6833248|6833586 hsa-miR-204-5p 0 0 1
chr19:6833248|6833586 hsa-miR-204-3p 0 0 1
chr19:6833248|6833586 hsa-miR-211-5p 0 0 1
chr19:6833248|6833586 hsa-miR-211-3p 0 0 1
chr19:6833248|6833586 hsa-miR-328-5p 0 0 1
chr19:6833248|6833586 hsa-miR-328-3p 0 0 1
chr19:6833248|6833586 hsa-miR-580-5p 0 0 1
chr19:6833248|6833586 hsa-miR-580-3p 0 0 1
chr19:6833248|6833586 hsa-miR-583 0 0 1
chr19:6833248|6833586 hsa-miR-589-5p 0 0 1
chr19:6833248|6833586 hsa-miR-589-3p 0 0 1
chr19:6833248|6833586 hsa-miR-625-5p 0 0 1
chr19:6833248|6833586 hsa-miR-625-3p 0 0 1
chr19:6833248|6833586 hsa-miR-659-5p 0 0 1
chr19:6833248|6833586 hsa-miR-659-3p 0 0 1
chr19:6833248|6833586 hsa-miR-668-5p 0 0 1
chr19:6833248|6833586 hsa-miR-668-3p 0 0 1
chr19:6833248|6833586 hsa-miR-765 0 0 1
chr19:6833248|6833586 hsa-miR-1291 0 1 1
chr19:6833248|6833586 hsa-miR-1250-5p 0 0 1
chr19:6833248|6833586 hsa-miR-1250-3p 0 0 1
chr19:6833248|6833586 hsa-miR-1253 0 0 1
chr19:6833248|6833586 hsa-miR-548m 0 0 1
chr19:6833248|6833586 hsa-miR-1275 0 0 1
chr19:6833248|6833586 hsa-miR-1276 0 0 1
chr19:6833248|6833586 hsa-miR-615-5p 0 0 1
chr19:6833248|6833586 hsa-miR-146b-3p 0 0 1
chr19:6833248|6833586 hsa-miR-339-5p 0 0 1
chr19:6833248|6833586 hsa-miR-1289 0 0 1
chr19:6833248|6833586 hsa-miR-628-3p 0 0 1
chr19:6833248|6833586 hsa-miR-502-5p 0 1 1
chr19:6833248|6833586 hsa-miR-1274a 0 0 1
chr19:6833248|6833586 hsa-miR-1826 0 0 1
chr19:6833248|6833586 hsa-miR-637 1 0 0
chr19:6833248|6833586 hsa-miR-3911 1 0 0
chr19:6833248|6833586 hsa-miR-4421 0 1 0
chr19:6833248|6833586 hsa-miR-378h 0 1 0
chr19:6833248|6833586 hsa-miR-3689c 0 1 0
chr19:6833248|6833586 hsa-miR-4739 1 0 0
chr19:6833248|6833586 hsa-miR-5698 1 0 0
chr19:6833248|6833586 hsa-miR-214-5p 0 1 0
chr19:6833248|6833586 hsa-miR-7106-5p 1 1 0
chr19:6833248|6833586 hsa-miR-125a-3p 1 1 0
chr19:6833248|6833586 hsa-miR-30b-3p 0 1 0
chr19:6833248|6833586 hsa-miR-6735-3p 0 1 0
chr19:6833248|6833586 hsa-miR-7109-5p 1 0 0
chr19:6833248|6833586 hsa-miR-4793-5p 0 1 0
chr19:6833248|6833586 hsa-miR-3127-5p 0 1 0
chr19:6833248|6833586 hsa-miR-7161-3p 0 1 0
chr19:6833248|6833586 hsa-miR-877-5p 0 1 0
chr19:6833248|6833586 hsa-miR-3925-5p 0 1 0
chr19:6833248|6833586 hsa-miR-6800-5p 0 1 0
chr19:6833248|6833586 hsa-miR-2276-3p 0 1 0
chr19:6833248|6833586 hsa-miR-1244 0 1 0
chr19:6833248|6833586 hsa-miR-1273h-5p 0 1 0
chr19:6833248|6833586 hsa-miR-3689b-3p 0 1 0
chr19:6833248|6833586 hsa-miR-6812-5p 1 0 0
chr19:6833248|6833586 hsa-miR-6865-5p 1 0 0
chr19:6833248|6833586 hsa-miR-6769a-5p 1 0 0
chr19:6833248|6833586 hsa-miR-6779-5p 1 1 0
chr19:6833248|6833586 hsa-miR-10396a-5p 1 0 0
chr19:6833248|6833586 hsa-miR-4685-5p 1 0 0
chr19:6833248|6833586 hsa-miR-6777-5p 1 0 0
chr19:6833248|6833586 hsa-miR-30c-1-3p 0 1 0
chr19:6833248|6833586 hsa-miR-1914-3p 1 0 0
chr19:6833248|6833586 hsa-miR-7107-3p 0 1 0
chr19:6833248|6833586 hsa-miR-6775-3p 0 1 0
chr19:6833248|6833586 hsa-miR-6817-5p 0 1 0
chr19:6833248|6833586 hsa-miR-370-5p 0 1 0
chr19:6833248|6833586 hsa-miR-4724-3p 0 1 0
chr19:6833248|6833586 hsa-miR-217-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr19:6833248|6833586
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MMTKSGMQDPPPRFSPKQHLTGLAGCGL
Nucleotide Sequence CTGATGACCAAGTCCGGTATGCAGGACCCTCCTCCCAGATTCTCACCTAAGCAGCATCTGACAGGCCTTGCAGGATGTGGTCTC

CircID chr19:6833248|6833586
ORF Type ORF2
Protein Length 76
Nucleotide Length 231
Protein Sequence MAAVALIEGTSEMQGTHKEERVTFTDRAKYSAKNIKGPLGFSLDQESDGEAEDQSRDSPISQFREPITRPSSLARN
Nucleotide Sequence ATGGCAGCGGTAGCCCTGATAGAAGGTACCTCTGAGATGCAGGGAACACATAAAGAAGAGCGAGTGACCTTTACAGACAGGGCCAAATATTCTGCTAAAAACATAAAGGGACCCCTTGGGTTCTCTTTAGATCAGGAGAGTGACGGAGAAGCAGAAGATCAAAGTAGGGACTCCCCCATCTCCCAATTTAGGGAACCAATTACTAGGCCATCTTCTCTAGCAAGGAACTGA

CircID chr19:6833248|6833586
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MHTGLGHQFLAREDGLVIGSLNWEMGESLL
Nucleotide Sequence CTGCATACCGGACTTGGTCATCAGTTCCTTGCTAGAGAAGATGGCCTAGTAATTGGTTCCCTAAATTGGGAGATGGGGGAGTCCCTACTTTGA

CircID chr19:6833248|6833586
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MFLAEYLALSVKVTRSSLCVPCISEVPSIRATAAIGAGHLHTRS
Nucleotide Sequence ATGTTTTTAGCAGAATATTTGGCCCTGTCTGTAAAGGTCACTCGCTCTTCTTTATGTGTTCCCTGCATCTCAGAGGTACCTTCTATCAGGGCTACCGCTGCCATCGGTGCCGGGCATCTGCACACAAGGAGT

CircID chr19:6833248|6833586
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MCSLHLRGTFYQGYRCHRCRASAHKE
Nucleotide Sequence ATGTGTTCCCTGCATCTCAGAGGTACCTTCTATCAGGGCTACCGCTGCCATCGGTGCCGGGCATCTGCACACAAGGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites