CircRNA Information

General Information
circRNA Basic Information
CircID chr19:756923|757143
Strand +
CircType exon
Host Gene ENSG00000099812.7;
Algorism CIRI2;
Sequence ACCCCCTGCCTCTGCACGCCCTGCTGGGCCCTGTGGTCAGTGGGCCATGTCTGCGGCTCATCCTGGCCCCAGCCGCTGGCCTCGGGGCCCATGCACACCAGATGGTATGTGTAGCTGGTGTCTCCATCCAGCACCAGGCCGGTGCCACGGTGTGCCTGAGGGATGCCCAGGATGGGGTATCTGGTCACGCGGTCCATCTCTTCCGGGGTCTTGGCCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:756923|757143 hsa-miR-214-5p 0 0 1
chr19:756923|757143 hsa-miR-214-3p 0 0 1
chr19:756923|757143 hsa-miR-612 0 1 1
chr19:756923|757143 hsa-miR-940 0 0 1
chr19:756923|757143 hsa-miR-1226-5p 0 0 1
chr19:756923|757143 hsa-miR-1226-3p 0 0 1
chr19:756923|757143 hsa-miR-1234-3p 0 0 1
chr19:756923|757143 hsa-miR-1287-5p 0 0 1
chr19:756923|757143 hsa-miR-1287-3p 0 0 1
chr19:756923|757143 hsa-miR-1255a 0 0 1
chr19:756923|757143 hsa-miR-1827 0 0 1
chr19:756923|757143 hsa-miR-1234 0 0 1
chr19:756923|757143 hsa-miR-296-5p 0 0 1
chr19:756923|757143 hsa-miR-324-5p 0 1 1
chr19:756923|757143 hsa-miR-140-3p 0 1 1
chr19:756923|757143 hsa-miR-1207-5p 1 0 1
chr19:756923|757143 hsa-miR-1255b 0 0 1
chr19:756923|757143 hsa-miR-220c 0 0 1
chr19:756923|757143 hsa-miR-1285 0 0 1
chr19:756923|757143 hsa-miR-1268 0 0 1
chr19:756923|757143 hsa-miR-220a 0 0 1
chr19:756923|757143 hsa-miR-762 1 1 0
chr19:756923|757143 hsa-miR-761 0 1 0
chr19:756923|757143 hsa-miR-765 1 0 0
chr19:756923|757143 hsa-miR-1204 0 1 0
chr19:756923|757143 hsa-miR-1268a 0 1 0
chr19:756923|757143 hsa-miR-711 1 0 0
chr19:756923|757143 hsa-miR-3141 1 0 0
chr19:756923|757143 hsa-miR-3166 0 1 0
chr19:756923|757143 hsa-miR-3175 1 0 0
chr19:756923|757143 hsa-miR-4270 1 0 0
chr19:756923|757143 hsa-miR-3918 1 1 0
chr19:756923|757143 hsa-miR-1268b 0 1 0
chr19:756923|757143 hsa-miR-4489 1 0 0
chr19:756923|757143 hsa-miR-4505 0 1 0
chr19:756923|757143 hsa-miR-4530 0 1 0
chr19:756923|757143 hsa-miR-5690 0 1 0
chr19:756923|757143 hsa-miR-5787 0 1 0
chr19:756923|757143 hsa-miR-6069 1 0 0
chr19:756923|757143 hsa-miR-6077 0 1 0
chr19:756923|757143 hsa-miR-6132 1 0 0
chr19:756923|757143 hsa-miR-8085 1 1 0
chr19:756923|757143 hsa-miR-8089 1 0 0
chr19:756923|757143 hsa-miR-132-5p 0 1 0
chr19:756923|757143 hsa-miR-4731-5p 0 1 0
chr19:756923|757143 hsa-miR-6765-5p 1 0 0
chr19:756923|757143 hsa-miR-6510-5p 0 1 0
chr19:756923|757143 hsa-miR-6804-5p 1 0 0
chr19:756923|757143 hsa-miR-139-3p 1 0 0
chr19:756923|757143 hsa-miR-1227-5p 0 1 0
chr19:756923|757143 hsa-miR-6089 1 1 0
chr19:756923|757143 hsa-miR-7160-5p 0 1 0
chr19:756923|757143 hsa-miR-6727-5p 0 1 0
chr19:756923|757143 hsa-miR-181a-2-3p 0 1 0
chr19:756923|757143 hsa-miR-6732-5p 1 0 0
chr19:756923|757143 hsa-miR-6881-5p 1 0 0
chr19:756923|757143 hsa-miR-2467-3p 0 1 0
chr19:756923|757143 hsa-miR-3667-5p 0 1 0
chr19:756923|757143 hsa-miR-6821-5p 0 1 0
chr19:756923|757143 hsa-miR-6810-5p 1 0 0
chr19:756923|757143 hsa-miR-939-3p 0 1 0
chr19:756923|757143 hsa-miR-4793-5p 0 1 0
chr19:756923|757143 hsa-miR-4640-5p 1 1 0
chr19:756923|757143 hsa-miR-3162-5p 1 0 0
chr19:756923|757143 hsa-miR-6781-5p 1 0 0
chr19:756923|757143 hsa-miR-4707-5p 1 0 0
chr19:756923|757143 hsa-miR-1250-5p 0 1 0
chr19:756923|757143 hsa-miR-744-5p 1 0 0
chr19:756923|757143 hsa-miR-891a-3p 0 1 0
chr19:756923|757143 hsa-miR-4649-3p 1 1 0
chr19:756923|757143 hsa-miR-6767-5p 0 1 0
chr19:756923|757143 hsa-miR-4763-3p 1 0 0
chr19:756923|757143 hsa-miR-6816-5p 1 0 0
chr19:756923|757143 hsa-miR-6775-5p 1 0 0
chr19:756923|757143 hsa-miR-6752-5p 0 1 0
chr19:756923|757143 hsa-miR-6756-5p 1 0 0
chr19:756923|757143 hsa-miR-7107-5p 0 1 0
chr19:756923|757143 hsa-miR-6722-3p 1 0 0
chr19:756923|757143 hsa-miR-6808-5p 0 1 0
chr19:756923|757143 hsa-miR-6836-5p 1 1 0
chr19:756923|757143 hsa-miR-10396a-5p 1 0 0
chr19:756923|757143 hsa-miR-1237-5p 1 0 0
chr19:756923|757143 hsa-miR-4649-5p 1 0 0
chr19:756923|757143 hsa-miR-4726-5p 1 1 0
chr19:756923|757143 hsa-miR-6729-5p 1 0 0
chr19:756923|757143 hsa-miR-6777-5p 1 0 0
chr19:756923|757143 hsa-miR-6889-5p 1 0 0
chr19:756923|757143 hsa-miR-6845-5p 1 1 0
chr19:756923|757143 hsa-miR-10396b-3p 1 0 0
chr19:756923|757143 hsa-miR-6773-5p 0 1 0
chr19:756923|757143 hsa-miR-6724-5p 1 1 0
chr19:756923|757143 hsa-miR-6762-5p 1 1 0
chr19:756923|757143 hsa-miR-6837-5p 0 1 0
chr19:756923|757143 hsa-miR-504-5p 1 0 0
chr19:756923|757143 hsa-miR-6783-3p 0 1 0
chr19:756923|757143 hsa-miR-3619-5p 0 1 0
chr19:756923|757143 hsa-miR-6715b-5p 0 1 0
chr19:756923|757143 hsa-miR-1255b-5p 0 1 0
chr19:756923|757143 hsa-miR-4789-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:756923|757143
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MWSVGHVCGSSWPQPLASGPMHTRWYV
Nucleotide Sequence CTGTGGTCAGTGGGCCATGTCTGCGGCTCATCCTGGCCCCAGCCGCTGGCCTCGGGGCCCATGCACACCAGATGGTATGTGTAG
CircID chr19:756923|757143
ORF Type ORF2
Protein Length 58
Nucleotide Length 174
Protein Sequence MSAAHPGPSRWPRGPCTPDGMCSWCLHPAPGRCHGVPEGCPGWGIWSRGPSLPGSWPQ
Nucleotide Sequence ATGTCTGCGGCTCATCCTGGCCCCAGCCGCTGGCCTCGGGGCCCATGCACACCAGATGGTATGTGTAGCTGGTGTCTCCATCCAGCACCAGGCCGGTGCCACGGTGTGCCTGAGGGATGCCCAGGATGGGGTATCTGGTCACGCGGTCCATCTCTTCCGGGGTCTTGGCCTCAG
CircID chr19:756923|757143
ORF Type ORF3
Protein Length 72
Nucleotide Length 216
Protein Sequence MPLHALLGPVVSGPCLRLILAPAAGLGAHAHQMVCVAGVSIQHQAGATVCLRDAQDGVSGHAVHLFRGLGLS
Nucleotide Sequence CTGCCTCTGCACGCCCTGCTGGGCCCTGTGGTCAGTGGGCCATGTCTGCGGCTCATCCTGGCCCCAGCCGCTGGCCTCGGGGCCCATGCACACCAGATGGTATGTGTAGCTGGTGTCTCCATCCAGCACCAGGCCGGTGCCACGGTGTGCCTGAGGGATGCCCAGGATGGGGTATCTGGTCACGCGGTCCATCTCTTCCGGGGTCTTGGCCTCAGC
CircID chr19:756923|757143
ORF Type ORF4
Protein Length 65
Nucleotide Length 195
Protein Sequence MDRVTRYPILGIPQAHRGTGLVLDGDTSYTYHLVCMGPEASGWGQDEPQTWPTDHRAQQGVQRQG
Nucleotide Sequence ATGGACCGCGTGACCAGATACCCCATCCTGGGCATCCCTCAGGCACACCGTGGCACCGGCCTGGTGCTGGATGGAGACACCAGCTACACATACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGCCAGGATGAGCCGCAGACATGGCCCACTGACCACAGGGCCCAGCAGGGCGTGCAGAGGCAGGGG
CircID chr19:756923|757143
ORF Type ORF5
Protein Length 42
Nucleotide Length 126
Protein Sequence METPATHTIWCAWAPRPAAGARMSRRHGPLTTGPSRACRGRG
Nucleotide Sequence ATGGAGACACCAGCTACACATACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGCCAGGATGAGCCGCAGACATGGCCCACTGACCACAGGGCCCAGCAGGGCGTGCAGAGGCAGGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab