CircRNA Information

General Information
circRNA Basic Information
CircID chr19:7618064|7618237
Strand -
CircType exon
Host Gene ENSG00000076826.8;
Algorism CIRI2;
Sequence CCGGGCGGTCCACGGGCCGGGCCCTGTGTGCTGCGGCCGCCATCCCCTGGAGGACAGTCAGTCGGTATTCCTGGGTCCTGTCTGTCCCCAACCGTGTCTGGGTGGGGCTGGAGTCTCCACCCTCTGACTTTGAGTCCAGTCCTGCTGTGGGGGCTGAGCTGGGAGGTTCAGGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:7618064|7618237 hsa-miR-214-5p 0 0 1
chr19:7618064|7618237 hsa-miR-214-3p 0 0 1
chr19:7618064|7618237 hsa-miR-422a 0 1 1
chr19:7618064|7618237 hsa-miR-520g-5p 0 0 1
chr19:7618064|7618237 hsa-miR-520g-3p 0 0 1
chr19:7618064|7618237 hsa-miR-520h 0 0 1
chr19:7618064|7618237 hsa-miR-766-5p 0 0 1
chr19:7618064|7618237 hsa-miR-766-3p 0 0 1
chr19:7618064|7618237 hsa-miR-888-5p 0 0 1
chr19:7618064|7618237 hsa-miR-888-3p 0 0 1
chr19:7618064|7618237 hsa-miR-943 0 0 1
chr19:7618064|7618237 hsa-miR-1286 0 0 1
chr19:7618064|7618237 hsa-miR-1324 0 0 1
chr19:7618064|7618237 hsa-miR-508-5p 0 0 1
chr19:7618064|7618237 hsa-miR-125a-5p 0 0 1
chr19:7618064|7618237 hsa-miR-125b 0 0 1
chr19:7618064|7618237 hsa-miR-220c 0 0 1
chr19:7618064|7618237 hsa-miR-378 0 0 1
chr19:7618064|7618237 hsa-miR-107 1 0 0
chr19:7618064|7618237 hsa-miR-638 1 0 0
chr19:7618064|7618237 hsa-miR-762 1 0 0
chr19:7618064|7618237 hsa-miR-761 0 1 0
chr19:7618064|7618237 hsa-miR-1538 0 1 0
chr19:7618064|7618237 hsa-miR-711 0 1 0
chr19:7618064|7618237 hsa-miR-378b 0 1 0
chr19:7618064|7618237 hsa-miR-3169 0 1 0
chr19:7618064|7618237 hsa-miR-378c 0 1 0
chr19:7618064|7618237 hsa-miR-3654 0 1 0
chr19:7618064|7618237 hsa-miR-3943 0 1 0
chr19:7618064|7618237 hsa-miR-378e 0 1 0
chr19:7618064|7618237 hsa-miR-378f 0 1 0
chr19:7618064|7618237 hsa-miR-378g 0 1 0
chr19:7618064|7618237 hsa-miR-378h 0 1 0
chr19:7618064|7618237 hsa-miR-4462 0 1 0
chr19:7618064|7618237 hsa-miR-4515 0 1 0
chr19:7618064|7618237 hsa-miR-4526 1 0 0
chr19:7618064|7618237 hsa-miR-378i 0 1 0
chr19:7618064|7618237 hsa-miR-4688 1 0 0
chr19:7618064|7618237 hsa-miR-4741 1 0 0
chr19:7618064|7618237 hsa-miR-4767 1 0 0
chr19:7618064|7618237 hsa-miR-8089 1 0 0
chr19:7618064|7618237 hsa-miR-500b-3p 0 1 0
chr19:7618064|7618237 hsa-miR-4700-3p 1 1 0
chr19:7618064|7618237 hsa-miR-1247-3p 0 1 0
chr19:7618064|7618237 hsa-miR-4665-3p 1 1 0
chr19:7618064|7618237 hsa-miR-6720-5p 0 1 0
chr19:7618064|7618237 hsa-miR-6727-5p 1 0 0
chr19:7618064|7618237 hsa-miR-8069 1 0 0
chr19:7618064|7618237 hsa-miR-7845-5p 1 0 0
chr19:7618064|7618237 hsa-miR-6732-5p 1 1 0
chr19:7618064|7618237 hsa-miR-6810-5p 0 1 0
chr19:7618064|7618237 hsa-miR-1226-5p 1 0 0
chr19:7618064|7618237 hsa-miR-1908-3p 1 0 0
chr19:7618064|7618237 hsa-miR-4787-5p 1 0 0
chr19:7618064|7618237 hsa-miR-103a-3p 1 0 0
chr19:7618064|7618237 hsa-miR-450a-2-3p 0 1 0
chr19:7618064|7618237 hsa-miR-4758-3p 0 1 0
chr19:7618064|7618237 hsa-miR-6770-3p 0 1 0
chr19:7618064|7618237 hsa-miR-1199-3p 0 1 0
chr19:7618064|7618237 hsa-miR-3664-3p 0 1 0
chr19:7618064|7618237 hsa-miR-1911-5p 0 1 0
chr19:7618064|7618237 hsa-miR-6510-3p 0 1 0
chr19:7618064|7618237 hsa-miR-10400-5p 1 0 0
chr19:7618064|7618237 hsa-miR-6775-5p 1 0 0
chr19:7618064|7618237 hsa-miR-5001-5p 0 1 0
chr19:7618064|7618237 hsa-miR-6737-5p 1 0 0
chr19:7618064|7618237 hsa-miR-6752-5p 1 0 0
chr19:7618064|7618237 hsa-miR-6803-5p 1 0 0
chr19:7618064|7618237 hsa-miR-1237-5p 1 0 0
chr19:7618064|7618237 hsa-miR-328-5p 1 0 0
chr19:7618064|7618237 hsa-miR-4685-5p 1 0 0
chr19:7618064|7618237 hsa-miR-6735-5p 1 0 0
chr19:7618064|7618237 hsa-miR-5008-3p 1 0 0
chr19:7618064|7618237 hsa-miR-6773-5p 1 0 0
chr19:7618064|7618237 hsa-miR-378a-3p 0 1 0
chr19:7618064|7618237 hsa-miR-6512-3p 0 1 0
chr19:7618064|7618237 hsa-miR-4691-5p 0 1 0
chr19:7618064|7618237 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:7618064|7618237
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MRPPSPGGQSVGIPGSCLSPTVSGWGWSLHPLTLSPVLLWGLSWEVQG
Nucleotide Sequence CTGCGGCCGCCATCCCCTGGAGGACAGTCAGTCGGTATTCCTGGGTCCTGTCTGTCCCCAACCGTGTCTGGGTGGGGCTGGAGTCTCCACCCTCTGACTTTGAGTCCAGTCCTGCTGTGGGGGCTGAGCTGGGAGGTTCAGGGA

CircID chr19:7618064|7618237
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MEDSQSVFLGPVCPQPCLGGAGVSTL
Nucleotide Sequence CTGGAGGACAGTCAGTCGGTATTCCTGGGTCCTGTCTGTCCCCAACCGTGTCTGGGTGGGGCTGGAGTCTCCACCCTCTGA

CircID chr19:7618064|7618237
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MCAAAAIPWRTVSRYSWVLSVPNRVWVGLESPPSDFESSPAVGAELGGSG
Nucleotide Sequence CTGTGTGCTGCGGCCGCCATCCCCTGGAGGACAGTCAGTCGGTATTCCTGGGTCCTGTCTGTCCCCAACCGTGTCTGGGTGGGGCTGGAGTCTCCACCCTCTGACTTTGAGTCCAGTCCTGCTGTGGGGGCTGAGCTGGGAGGTTCAGGG

CircID chr19:7618064|7618237
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MNLPAQPPQQDWTQSQRVETPAPPRHGWGQTGPRNTD
Nucleotide Sequence CTGAACCTCCCAGCTCAGCCCCCACAGCAGGACTGGACTCAAAGTCAGAGGGTGGAGACTCCAGCCCCACCCAGACACGGTTGGGGACAGACAGGACCCAGGAATACCGACTGA

CircID chr19:7618064|7618237
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MDSKSEGGDSSPTQTRLGTDRTQEYRLTVLQGMAAAAHRARPVDRP
Nucleotide Sequence CTGGACTCAAAGTCAGAGGGTGGAGACTCCAGCCCCACCCAGACACGGTTGGGGACAGACAGGACCCAGGAATACCGACTGACTGTCCTCCAGGGGATGGCGGCCGCAGCACACAGGGCCCGGCCCGTGGACCGCCCG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites