CircRNA Information

General Information
circRNA Basic Information
CircID chr19:7619579|7619780
Strand +
CircType exon
Host Gene ENSG00000076924.10;
Algorism CIRI2;
Sequence GAGGACGAGGACGAGATGGACCTGGAGCCCAACGGTGAGGGCCCGGCTGGGGCGGGGACGGTGGCATTACCAGGGTGGGCCTCGGGGGACAGGCCAACGCCAGGAGGGTGACTGGCTCCCGCCTTCCCCACAGAGGTTCGGCTGGAGCAGCAGAGCGTGCCAGCCGCAGTGTTTGGGAGCCTGAAGGAAGACTGACCCGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:7619579|7619780 hsa-miR-205-5p 0 0 1
chr19:7619579|7619780 hsa-miR-205-3p 0 0 1
chr19:7619579|7619780 hsa-miR-141-5p 0 0 1
chr19:7619579|7619780 hsa-miR-141-3p 0 0 1
chr19:7619579|7619780 hsa-miR-150-5p 0 0 1
chr19:7619579|7619780 hsa-miR-150-3p 0 0 1
chr19:7619579|7619780 hsa-miR-200a-5p 0 0 1
chr19:7619579|7619780 hsa-miR-200a-3p 0 0 1
chr19:7619579|7619780 hsa-miR-484 0 0 1
chr19:7619579|7619780 hsa-miR-564 0 0 1
chr19:7619579|7619780 hsa-miR-575 0 0 1
chr19:7619579|7619780 hsa-miR-622 0 0 1
chr19:7619579|7619780 hsa-miR-766-5p 0 0 1
chr19:7619579|7619780 hsa-miR-766-3p 0 0 1
chr19:7619579|7619780 hsa-miR-1306-5p 0 0 1
chr19:7619579|7619780 hsa-miR-1306-3p 0 0 1
chr19:7619579|7619780 hsa-miR-491-5p 0 0 1
chr19:7619579|7619780 hsa-miR-365 0 0 1
chr19:7619579|7619780 hsa-miR-4741 1 0 0
chr19:7619579|7619780 hsa-miR-5787 1 0 0
chr19:7619579|7619780 hsa-miR-6071 0 1 0
chr19:7619579|7619780 hsa-miR-6749-3p 1 0 0
chr19:7619579|7619780 hsa-miR-3194-3p 0 1 0
chr19:7619579|7619780 hsa-miR-6879-3p 0 1 0
chr19:7619579|7619780 hsa-miR-6825-5p 0 1 0
chr19:7619579|7619780 hsa-miR-3189-5p 1 0 0
chr19:7619579|7619780 hsa-miR-6796-5p 0 1 0
chr19:7619579|7619780 hsa-miR-6765-3p 1 0 0
chr19:7619579|7619780 hsa-miR-6728-3p 0 1 0
chr19:7619579|7619780 hsa-miR-6740-3p 0 1 0
chr19:7619579|7619780 hsa-miR-4707-3p 1 1 0
chr19:7619579|7619780 hsa-miR-3944-3p 1 0 0
chr19:7619579|7619780 hsa-miR-4715-3p 0 1 0
chr19:7619579|7619780 hsa-miR-339-5p 0 1 0
chr19:7619579|7619780 hsa-miR-4707-5p 1 0 0
chr19:7619579|7619780 hsa-miR-4649-3p 1 0 0
chr19:7619579|7619780 hsa-miR-6777-3p 1 0 0
chr19:7619579|7619780 hsa-miR-6760-3p 1 0 0
chr19:7619579|7619780 hsa-miR-6748-3p 0 1 0
chr19:7619579|7619780 hsa-miR-3620-3p 1 0 0
chr19:7619579|7619780 hsa-miR-6780b-5p 0 1 0
chr19:7619579|7619780 hsa-miR-4725-3p 0 1 0
chr19:7619579|7619780 hsa-miR-10396a-3p 1 0 0
chr19:7619579|7619780 hsa-miR-10396b-3p 1 0 0
chr19:7619579|7619780 hsa-miR-4665-5p 0 1 0
chr19:7619579|7619780 hsa-miR-6753-3p 1 0 0
chr19:7619579|7619780 hsa-miR-9851-5p 0 1 0
chr19:7619579|7619780 hsa-miR-6805-3p 0 1 0
chr19:7619579|7619780 hsa-miR-10400-3p 0 1 0
chr19:7619579|7619780 hsa-miR-10392-3p 1 0 0
chr19:7619579|7619780 hsa-miR-6500-5p 0 1 0
chr19:7619579|7619780 hsa-miR-6824-3p 0 1 0
chr19:7619579|7619780 hsa-miR-4704-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:7619579|7619780
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MDLEPNGEGPAGAGTVALPGWASGDRPTPGG
Nucleotide Sequence ATGGACCTGGAGCCCAACGGTGAGGGCCCGGCTGGGGCGGGGACGGTGGCATTACCAGGGTGGGCCTCGGGGGACAGGCCAACGCCAGGAGGGTGA
CircID chr19:7619579|7619780
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MAPAFPTEVRLEQQSVPAAVFGSLKED
Nucleotide Sequence CTGGCTCCCGCCTTCCCCACAGAGGTTCGGCTGGAGCAGCAGAGCGTGCCAGCCGCAGTGTTTGGGAGCCTGAAGGAAGACTGA
CircID chr19:7619579|7619780
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MGRGRWHYQGGPRGTGQRQEGDWLPPSPQRFGWSSRACQPQCLGA
Nucleotide Sequence CTGGGGCGGGGACGGTGGCATTACCAGGGTGGGCCTCGGGGGACAGGCCAACGCCAGGAGGGTGACTGGCTCCCGCCTTCCCCACAGAGGTTCGGCTGGAGCAGCAGAGCGTGCCAGCCGCAGTGTTTGGGAGCCTGA
CircID chr19:7619579|7619780
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MRLARSAAPAEPLWGRREPVTLLALACPPRPTLVMPPSPPQPGPHRWAPGPSRPRP
Nucleotide Sequence CTGCGGCTGGCACGCTCTGCTGCTCCAGCCGAACCTCTGTGGGGAAGGCGGGAGCCAGTCACCCTCCTGGCGTTGGCCTGTCCCCCGAGGCCCACCCTGGTAATGCCACCGTCCCCGCCCCAGCCGGGCCCTCACCGTTGGGCTCCAGGTCCATCTCGTCCTCGTCCT
CircID chr19:7619579|7619780
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MLLQPNLCGEGGSQSPSWRWPVPRGPPW
Nucleotide Sequence CTGCTGCTCCAGCCGAACCTCTGTGGGGAAGGCGGGAGCCAGTCACCCTCCTGGCGTTGGCCTGTCCCCCGAGGCCCACCCTGGTAA
CircID chr19:7619579|7619780
ORF Type ORF6
Protein Length 30
Nucleotide Length 90
Protein Sequence MSPEAHPGNATVPAPAGPSPLGSRSISSSS
Nucleotide Sequence CTGTCCCCCGAGGCCCACCCTGGTAATGCCACCGTCCCCGCCCCAGCCGGGCCCTCACCGTTGGGCTCCAGGTCCATCTCGTCCTCGTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab