CircRNA Information

General Information
circRNA Basic Information
CircID chr19:7640778|7640976
Strand -
CircType exon
Host Gene ENSG00000268400.4;
Algorism CIRI2;
Sequence CTACAAAGCGGCCCATATCTTCTTCACCGACAGTGAGTGAGGAGAGCCTAGGGTGTTGGTGGGTGGGGCAAGGAGGTGTGGGGGCTGCTCTGGCCTGATGCCCCACTCCTGCCTCACCCCAGCCTGCCCCGAGCCCCTGTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGAAGACGTTGAAGGAGATTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:7640778|7640976 hsa-miR-95-5p 0 0 1
chr19:7640778|7640976 hsa-miR-95-3p 0 0 1
chr19:7640778|7640976 hsa-miR-197-5p 0 0 1
chr19:7640778|7640976 hsa-miR-197-3p 0 0 1
chr19:7640778|7640976 hsa-miR-205-5p 0 0 1
chr19:7640778|7640976 hsa-miR-205-3p 0 0 1
chr19:7640778|7640976 hsa-miR-412-5p 0 0 1
chr19:7640778|7640976 hsa-miR-412-3p 0 0 1
chr19:7640778|7640976 hsa-miR-608 0 0 1
chr19:7640778|7640976 hsa-miR-645 0 0 1
chr19:7640778|7640976 hsa-miR-940 0 0 1
chr19:7640778|7640976 hsa-miR-1228-5p 0 0 1
chr19:7640778|7640976 hsa-miR-1228-3p 0 0 1
chr19:7640778|7640976 hsa-miR-1202 0 0 1
chr19:7640778|7640976 hsa-miR-1208 0 0 1
chr19:7640778|7640976 hsa-miR-1827 0 0 1
chr19:7640778|7640976 hsa-miR-486-3p 0 0 1
chr19:7640778|7640976 hsa-miR-502-5p 0 0 1
chr19:7640778|7640976 hsa-miR-342-5p 0 0 1
chr19:7640778|7640976 hsa-miR-220b 0 0 1
chr19:7640778|7640976 hsa-miR-1183 0 1 0
chr19:7640778|7640976 hsa-miR-2861 1 0 0
chr19:7640778|7640976 hsa-miR-3185 0 1 0
chr19:7640778|7640976 hsa-miR-3943 0 1 0
chr19:7640778|7640976 hsa-miR-4479 1 0 0
chr19:7640778|7640976 hsa-miR-4505 0 1 0
chr19:7640778|7640976 hsa-miR-4514 0 1 0
chr19:7640778|7640976 hsa-miR-4692 0 1 0
chr19:7640778|7640976 hsa-miR-4710 0 1 0
chr19:7640778|7640976 hsa-miR-5090 0 1 0
chr19:7640778|7640976 hsa-miR-5787 0 1 0
chr19:7640778|7640976 hsa-miR-6085 0 1 0
chr19:7640778|7640976 hsa-miR-6090 1 0 0
chr19:7640778|7640976 hsa-miR-4433b-3p 0 1 0
chr19:7640778|7640976 hsa-miR-4731-5p 0 1 0
chr19:7640778|7640976 hsa-miR-4433a-3p 0 1 0
chr19:7640778|7640976 hsa-miR-1972 0 1 0
chr19:7640778|7640976 hsa-miR-6089 1 1 0
chr19:7640778|7640976 hsa-miR-4722-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6727-5p 0 1 0
chr19:7640778|7640976 hsa-miR-1915-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6845-3p 0 1 0
chr19:7640778|7640976 hsa-miR-3151-5p 0 1 0
chr19:7640778|7640976 hsa-miR-4711-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6782-5p 0 1 0
chr19:7640778|7640976 hsa-miR-4758-3p 0 1 0
chr19:7640778|7640976 hsa-miR-6792-5p 1 0 0
chr19:7640778|7640976 hsa-miR-6501-3p 0 1 0
chr19:7640778|7640976 hsa-miR-1296-3p 0 1 0
chr19:7640778|7640976 hsa-miR-1199-3p 1 0 0
chr19:7640778|7640976 hsa-miR-3124-3p 0 1 0
chr19:7640778|7640976 hsa-miR-4433a-5p 0 1 0
chr19:7640778|7640976 hsa-miR-3162-3p 0 1 0
chr19:7640778|7640976 hsa-miR-4763-3p 0 1 0
chr19:7640778|7640976 hsa-miR-6812-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6893-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6775-5p 0 1 0
chr19:7640778|7640976 hsa-miR-1343-5p 1 0 0
chr19:7640778|7640976 hsa-miR-6737-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6756-5p 1 1 0
chr19:7640778|7640976 hsa-miR-6813-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6819-5p 0 1 0
chr19:7640778|7640976 hsa-miR-7107-5p 1 0 0
chr19:7640778|7640976 hsa-miR-6722-3p 0 1 0
chr19:7640778|7640976 hsa-miR-6808-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6754-3p 0 1 0
chr19:7640778|7640976 hsa-miR-1909-3p 0 1 0
chr19:7640778|7640976 hsa-miR-4726-5p 0 1 0
chr19:7640778|7640976 hsa-miR-4745-5p 0 1 0
chr19:7640778|7640976 hsa-miR-6858-5p 1 0 0
chr19:7640778|7640976 hsa-miR-181b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:7640778|7640976
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MVGGARRCGGCSGLMPHSCLTPACPEPLFSELGRSRLAKVVKTLKEIH
Nucleotide Sequence TTGGTGGGTGGGGCAAGGAGGTGTGGGGGCTGCTCTGGCCTGATGCCCCACTCCTGCCTCACCCCAGCCTGCCCCGAGCCCCTGTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGAAGACGTTGAAGGAGATTCAC
CircID chr19:7640778|7640976
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MNRGSGQAGVRQEWGIRPEQPPHLLAPPTNTLGSPHSLSVKKIWAAL
Nucleotide Sequence CTGAACAGGGGCTCGGGGCAGGCTGGGGTGAGGCAGGAGTGGGGCATCAGGCCAGAGCAGCCCCCACACCTCCTTGCCCCACCCACCAACACCCTAGGCTCTCCTCACTCACTGTCGGTGAAGAAGATATGGGCCGCTTTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab