CircRNA Information

General Information
circRNA Basic Information
CircID chr19:7922264|7922515
Strand +
CircType exon
Host Gene ENSG00000104976.10;
Algorism CIRI2;
Sequence CAGGGCTGTGCAGGGCAGGAGTGGCAGCTCCTCTGGAAGTGACATGAGCAGGTCGAGGACCACAGCGGACTCTAGTGATGGATGGAGGAGAGGGGTAAGGGGACACCCCTGCCTGCTGCCAGGGACCCTTGATCCCTCTGCTCCTGCCCCCTCCCTCACCCTTCTCACCAGCTGCTGAGAGCTCGGGGCTGCGGCCACTTCGGGAGACAGAGGACAAGTACTTGTAGATCTTCTCAAAGTCCACAGCAAAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:7922264|7922515 hsa-miR-22-5p 0 0 1
chr19:7922264|7922515 hsa-miR-22-3p 0 0 1
chr19:7922264|7922515 hsa-miR-214-5p 0 0 1
chr19:7922264|7922515 hsa-miR-214-3p 0 0 1
chr19:7922264|7922515 hsa-miR-558 0 0 1
chr19:7922264|7922515 hsa-miR-580-5p 0 0 1
chr19:7922264|7922515 hsa-miR-580-3p 0 0 1
chr19:7922264|7922515 hsa-miR-646 0 0 1
chr19:7922264|7922515 hsa-miR-668-5p 0 0 1
chr19:7922264|7922515 hsa-miR-668-3p 0 0 1
chr19:7922264|7922515 hsa-miR-874-5p 0 0 1
chr19:7922264|7922515 hsa-miR-874-3p 0 0 1
chr19:7922264|7922515 hsa-miR-708-5p 0 0 1
chr19:7922264|7922515 hsa-miR-708-3p 0 0 1
chr19:7922264|7922515 hsa-miR-922 0 0 1
chr19:7922264|7922515 hsa-miR-940 0 0 1
chr19:7922264|7922515 hsa-miR-1253 0 0 1
chr19:7922264|7922515 hsa-miR-1321 0 0 1
chr19:7922264|7922515 hsa-miR-486-3p 0 0 1
chr19:7922264|7922515 hsa-miR-1283 0 0 1
chr19:7922264|7922515 hsa-miR-885-3p 0 0 1
chr19:7922264|7922515 hsa-miR-146b-3p 0 0 1
chr19:7922264|7922515 hsa-miR-525-5p 0 0 1
chr19:7922264|7922515 hsa-miR-28-5p 0 0 1
chr19:7922264|7922515 hsa-miR-1207-3p 0 0 1
chr19:7922264|7922515 hsa-miR-767-3p 0 0 1
chr19:7922264|7922515 hsa-miR-34c-3p 0 0 1
chr19:7922264|7922515 hsa-miR-1207-5p 0 0 1
chr19:7922264|7922515 hsa-miR-520a-5p 0 0 1
chr19:7922264|7922515 hsa-miR-483-3p 1 0 1
chr19:7922264|7922515 hsa-miR-138 0 0 1
chr19:7922264|7922515 hsa-miR-1300 0 0 1
chr19:7922264|7922515 hsa-miR-622 1 0 0
chr19:7922264|7922515 hsa-miR-638 1 0 0
chr19:7922264|7922515 hsa-miR-639 1 0 0
chr19:7922264|7922515 hsa-miR-658 1 0 0
chr19:7922264|7922515 hsa-miR-298 1 0 0
chr19:7922264|7922515 hsa-miR-3154 1 0 0
chr19:7922264|7922515 hsa-miR-4688 1 0 0
chr19:7922264|7922515 hsa-miR-4689 1 0 0
chr19:7922264|7922515 hsa-miR-4739 1 0 0
chr19:7922264|7922515 hsa-miR-4741 1 0 0
chr19:7922264|7922515 hsa-miR-5787 1 0 0
chr19:7922264|7922515 hsa-miR-6127 1 0 0
chr19:7922264|7922515 hsa-miR-8073 1 0 0
chr19:7922264|7922515 hsa-miR-12121 1 0 0
chr19:7922264|7922515 hsa-miR-6765-5p 1 0 0
chr19:7922264|7922515 hsa-miR-205-5p 1 0 0
chr19:7922264|7922515 hsa-miR-7106-5p 1 0 0
chr19:7922264|7922515 hsa-miR-4687-3p 1 0 0
chr19:7922264|7922515 hsa-miR-210-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6728-5p 1 0 0
chr19:7922264|7922515 hsa-miR-3692-5p 1 0 0
chr19:7922264|7922515 hsa-miR-7160-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6890-5p 1 0 0
chr19:7922264|7922515 hsa-miR-23b-5p 1 0 0
chr19:7922264|7922515 hsa-miR-2467-3p 1 0 0
chr19:7922264|7922515 hsa-miR-6782-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6882-3p 1 0 0
chr19:7922264|7922515 hsa-miR-6788-3p 1 0 0
chr19:7922264|7922515 hsa-miR-4436b-5p 1 0 0
chr19:7922264|7922515 hsa-miR-939-3p 1 0 0
chr19:7922264|7922515 hsa-miR-4763-5p 1 0 0
chr19:7922264|7922515 hsa-miR-1229-5p 1 0 0
chr19:7922264|7922515 hsa-miR-4715-3p 1 0 0
chr19:7922264|7922515 hsa-miR-1228-5p 1 0 0
chr19:7922264|7922515 hsa-miR-149-3p 1 0 0
chr19:7922264|7922515 hsa-miR-194-3p 1 0 0
chr19:7922264|7922515 hsa-miR-6743-3p 1 0 0
chr19:7922264|7922515 hsa-miR-6813-3p 1 0 0
chr19:7922264|7922515 hsa-miR-4732-3p 1 0 0
chr19:7922264|7922515 hsa-miR-3180-5p 1 0 0
chr19:7922264|7922515 hsa-miR-1910-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6872-3p 1 0 0
chr19:7922264|7922515 hsa-miR-6773-3p 1 0 0
chr19:7922264|7922515 hsa-miR-4749-3p 1 0 0
chr19:7922264|7922515 hsa-miR-1228-3p 1 0 0
chr19:7922264|7922515 hsa-miR-4763-3p 1 0 0
chr19:7922264|7922515 hsa-miR-6787-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6812-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6816-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6743-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6756-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6779-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6797-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6754-3p 1 0 0
chr19:7922264|7922515 hsa-miR-4728-5p 1 0 0
chr19:7922264|7922515 hsa-miR-5196-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6836-5p 1 0 0
chr19:7922264|7922515 hsa-miR-328-5p 1 0 0
chr19:7922264|7922515 hsa-miR-4685-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6735-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6738-5p 1 0 0
chr19:7922264|7922515 hsa-miR-675-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6795-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6848-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6858-5p 1 0 0
chr19:7922264|7922515 hsa-miR-3187-5p 1 0 0
chr19:7922264|7922515 hsa-miR-939-5p 1 0 0
chr19:7922264|7922515 hsa-miR-4646-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6791-5p 1 0 0
chr19:7922264|7922515 hsa-miR-6792-3p 1 0 0
chr19:7922264|7922515 hsa-miR-4691-5p 1 0 0
chr19:7922264|7922515 hsa-miR-10397-5p 1 0 0
chr19:7922264|7922515 hsa-miR-4769-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:7922264|7922515
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MLRARGCGHFGRQRTSTCRSSQSPQQS
Nucleotide Sequence CTGCTGAGAGCTCGGGGCTGCGGCCACTTCGGGAGACAGAGGACAAGTACTTGTAGATCTTCTCAAAGTCCACAGCAAAGT
CircID chr19:7922264|7922515
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MSRSRTTADSSDGWRRGVRGHPCLLPGTLDPSAPAPSLTLLTSC
Nucleotide Sequence ATGAGCAGGTCGAGGACCACAGCGGACTCTAGTGATGGATGGAGGAGAGGGGTAAGGGGACACCCCTGCCTGCTGCCAGGGACCCTTGATCCCTCTGCTCCTGCCCCCTCCCTCACCCTTCTCACCAGCTGCTGA
CircID chr19:7922264|7922515
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MIPLLLPPPSPFSPAAESSGLRPLRETEDKYL
Nucleotide Sequence TTGATCCCTCTGCTCCTGCCCCCTCCCTCACCCTTCTCACCAGCTGCTGAGAGCTCGGGGCTGCGGCCACTTCGGGAGACAGAGGACAAGTACTTGTAG
CircID chr19:7922264|7922515
ORF Type ORF4
Protein Length 83
Nucleotide Length 249
Protein Sequence MLWTLRRSTSTCPLSPEVAAAPSSQQLVRRVREGAGAEGSRVPGSRQGCPLTPLLHPSLESAVVLDLLMSLPEELPLLPCTAL
Nucleotide Sequence TTGCTGTGGACTTTGAGAAGATCTACAAGTACTTGTCCTCTGTCTCCCGAAGTGGCCGCAGCCCCGAGCTCTCAGCAGCTGGTGAGAAGGGTGAGGGAGGGGGCAGGAGCAGAGGGATCAAGGGTCCCTGGCAGCAGGCAGGGGTGTCCCCTTACCCCTCTCCTCCATCCATCACTAGAGTCCGCTGTGGTCCTCGACCTGCTCATGTCACTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTG
CircID chr19:7922264|7922515
ORF Type ORF5
Protein Length 72
Nucleotide Length 216
Protein Sequence MSSVSRSGRSPELSAAGEKGEGGGRSRGIKGPWQQAGVSPYPSPPSITRVRCGPRPAHVTSRGAATPALHSP
Nucleotide Sequence TTGTCCTCTGTCTCCCGAAGTGGCCGCAGCCCCGAGCTCTCAGCAGCTGGTGAGAAGGGTGAGGGAGGGGGCAGGAGCAGAGGGATCAAGGGTCCCTGGCAGCAGGCAGGGGTGTCCCCTTACCCCTCTCCTCCATCCATCACTAGAGTCCGCTGTGGTCCTCGACCTGCTCATGTCACTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab