CircRNA Information

General Information
circRNA Basic Information
CircID chr19:7922865|7923029
Strand +
CircType exon
Host Gene ENSG00000104976.10;
Algorism CIRI2;
Sequence TGGGGGAGGCCAGCCCTGTCCGCCTGTCCTTGACATCAGGAGGCTTGTGAGTGGAGTCCTGCAACCCCCACCCAACCCCTGTACAACGGGGGTTCCATTTCTGAGACCCCCAAAGTATGGGGCATCTTAGAGGCCCGCCCCACAGCTGAGCATCATCTCAAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:7922865|7923029 hsa-miR-143-5p 0 0 1
chr19:7922865|7923029 hsa-miR-143-3p 0 0 1
chr19:7922865|7923029 hsa-miR-1286 0 0 1
chr19:7922865|7923029 hsa-miR-1293 0 0 1
chr19:7922865|7923029 hsa-miR-1262 0 0 1
chr19:7922865|7923029 hsa-miR-1275 0 0 1
chr19:7922865|7923029 hsa-miR-513b-5p 0 0 1
chr19:7922865|7923029 hsa-miR-513b-3p 0 0 1
chr19:7922865|7923029 hsa-miR-1322 0 1 1
chr19:7922865|7923029 hsa-miR-491-5p 0 0 1
chr19:7922865|7923029 hsa-miR-361-3p 0 0 1
chr19:7922865|7923029 hsa-miR-1207-3p 0 0 1
chr19:7922865|7923029 hsa-miR-637 0 1 0
chr19:7922865|7923029 hsa-miR-3131 1 1 0
chr19:7922865|7923029 hsa-miR-4259 1 0 0
chr19:7922865|7923029 hsa-miR-4440 1 0 0
chr19:7922865|7923029 hsa-miR-4447 0 1 0
chr19:7922865|7923029 hsa-miR-4466 1 0 0
chr19:7922865|7923029 hsa-miR-4507 1 0 0
chr19:7922865|7923029 hsa-miR-4647 1 0 0
chr19:7922865|7923029 hsa-miR-4651 1 0 0
chr19:7922865|7923029 hsa-miR-4689 1 0 0
chr19:7922865|7923029 hsa-miR-4784 1 0 0
chr19:7922865|7923029 hsa-miR-6088 1 0 0
chr19:7922865|7923029 hsa-miR-127-5p 1 0 0
chr19:7922865|7923029 hsa-miR-92a-1-5p 1 1 0
chr19:7922865|7923029 hsa-miR-92a-2-5p 1 1 0
chr19:7922865|7923029 hsa-miR-6894-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6728-5p 1 0 0
chr19:7922865|7923029 hsa-miR-7114-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6880-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6742-5p 1 0 0
chr19:7922865|7923029 hsa-miR-3180-3p 1 1 0
chr19:7922865|7923029 hsa-miR-6748-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6796-5p 0 1 0
chr19:7922865|7923029 hsa-miR-185-3p 0 1 0
chr19:7922865|7923029 hsa-miR-6782-5p 1 0 0
chr19:7922865|7923029 hsa-miR-615-3p 1 0 0
chr19:7922865|7923029 hsa-miR-6786-5p 1 0 0
chr19:7922865|7923029 hsa-miR-7109-5p 1 0 0
chr19:7922865|7923029 hsa-miR-1229-5p 1 0 0
chr19:7922865|7923029 hsa-miR-1228-5p 1 0 0
chr19:7922865|7923029 hsa-miR-296-3p 1 1 0
chr19:7922865|7923029 hsa-miR-7854-3p 1 0 0
chr19:7922865|7923029 hsa-miR-4446-3p 0 1 0
chr19:7922865|7923029 hsa-miR-3189-3p 1 0 0
chr19:7922865|7923029 hsa-miR-7112-5p 0 1 0
chr19:7922865|7923029 hsa-miR-660-3p 0 1 0
chr19:7922865|7923029 hsa-miR-6880-3p 1 0 0
chr19:7922865|7923029 hsa-miR-4763-3p 1 0 0
chr19:7922865|7923029 hsa-miR-6787-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6816-5p 0 1 0
chr19:7922865|7923029 hsa-miR-3180 0 1 0
chr19:7922865|7923029 hsa-miR-5001-5p 0 1 0
chr19:7922865|7923029 hsa-miR-6752-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6756-5p 1 1 0
chr19:7922865|7923029 hsa-miR-6769a-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6803-5p 1 1 0
chr19:7922865|7923029 hsa-miR-6813-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6819-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6842-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6722-3p 1 1 0
chr19:7922865|7923029 hsa-miR-6751-5p 1 1 0
chr19:7922865|7923029 hsa-miR-4728-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6836-5p 1 0 0
chr19:7922865|7923029 hsa-miR-1909-3p 1 0 0
chr19:7922865|7923029 hsa-miR-4745-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6846-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6848-5p 1 0 0
chr19:7922865|7923029 hsa-miR-3940-5p 1 0 0
chr19:7922865|7923029 hsa-miR-4665-5p 1 0 0
chr19:7922865|7923029 hsa-miR-6791-3p 0 1 0
chr19:7922865|7923029 hsa-miR-4472 0 1 0
chr19:7922865|7923029 hsa-miR-6766-5p 1 0 0
chr19:7922865|7923029 hsa-miR-4757-5p 0 1 0
chr19:7922865|7923029 hsa-miR-10400-3p 1 0 0
chr19:7922865|7923029 hsa-miR-10397-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:7922865|7923029
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MYNGGSISETPKVWGILEARPTAEHHLKD
Nucleotide Sequence CTGTACAACGGGGGTTCCATTTCTGAGACCCCCAAAGTATGGGGCATCTTAGAGGCCCGCCCCACAGCTGAGCATCATCTCAAGGAC
CircID chr19:7922865|7923029
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MGGGCRTPLTSLLMSRTGGQGWPPP
Nucleotide Sequence TTGGGTGGGGGTTGCAGGACTCCACTCACAAGCCTCCTGATGTCAAGGACAGGCGGACAGGGCTGGCCTCCCCCA
CircID chr19:7922865|7923029
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MPHTLGVSEMEPPLYRGWVGVAGLHSQAS
Nucleotide Sequence ATGCCCCATACTTTGGGGGTCTCAGAAATGGAACCCCCGTTGTACAGGGGTTGGGTGGGGGTTGCAGGACTCCACTCACAAGCCTCCTGA
CircID chr19:7922865|7923029
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MWGGPLRCPILWGSQKWNPRCTGVGWGLQDSTHKPPDVKDRRTGLASP
Nucleotide Sequence CTGTGGGGCGGGCCTCTAAGATGCCCCATACTTTGGGGGTCTCAGAAATGGAACCCCCGTTGTACAGGGGTTGGGTGGGGGTTGCAGGACTCCACTCACAAGCCTCCTGATGTCAAGGACAGGCGGACAGGGCTGGCCTCCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab