CircRNA Information

General Information
circRNA Basic Information
CircID chr19:7924724|7924961
Strand -
CircType exon
Host Gene ENSG00000178531.5;
Algorism CIRI2;
Sequence GCATCCTCGACACAGCCGCCATGGCAGGCCTTCGGGCTCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACGACGGCCAGACAACAGGGGAGGGAGGAGGGACAAGGGGGTCCCCACTTCCAGGGACGCACAATAGCAGAGCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:7924724|7924961 hsa-miR-210-5p 0 0 1
chr19:7924724|7924961 hsa-miR-210-3p 0 0 1
chr19:7924724|7924961 hsa-miR-484 0 0 1
chr19:7924724|7924961 hsa-miR-611 0 0 1
chr19:7924724|7924961 hsa-miR-632 0 0 1
chr19:7924724|7924961 hsa-miR-635 0 1 1
chr19:7924724|7924961 hsa-miR-874-5p 0 0 1
chr19:7924724|7924961 hsa-miR-874-3p 0 0 1
chr19:7924724|7924961 hsa-miR-147b-5p 0 0 1
chr19:7924724|7924961 hsa-miR-147b-3p 0 0 1
chr19:7924724|7924961 hsa-miR-744-5p 0 0 1
chr19:7924724|7924961 hsa-miR-744-3p 0 0 1
chr19:7924724|7924961 hsa-miR-760 1 1 1
chr19:7924724|7924961 hsa-miR-943 0 0 1
chr19:7924724|7924961 hsa-miR-1231 0 1 1
chr19:7924724|7924961 hsa-miR-1247-5p 0 0 1
chr19:7924724|7924961 hsa-miR-1247-3p 0 0 1
chr19:7924724|7924961 hsa-miR-1225-3p 0 0 1
chr19:7924724|7924961 hsa-miR-491-5p 0 1 1
chr19:7924724|7924961 hsa-miR-486-3p 0 0 1
chr19:7924724|7924961 hsa-miR-146b-3p 0 0 1
chr19:7924724|7924961 hsa-miR-574-5p 0 0 1
chr19:7924724|7924961 hsa-miR-1224-3p 1 1 1
chr19:7924724|7924961 hsa-miR-331-3p 0 0 1
chr19:7924724|7924961 hsa-miR-151-5p 0 0 1
chr19:7924724|7924961 hsa-miR-1233 0 0 1
chr19:7924724|7924961 hsa-miR-1274b 0 0 1
chr19:7924724|7924961 hsa-miR-596 1 0 0
chr19:7924724|7924961 hsa-miR-608 1 0 0
chr19:7924724|7924961 hsa-miR-623 1 0 0
chr19:7924724|7924961 hsa-miR-663a 1 0 0
chr19:7924724|7924961 hsa-miR-1470 1 0 0
chr19:7924724|7924961 hsa-miR-718 1 0 0
chr19:7924724|7924961 hsa-miR-2861 1 0 0
chr19:7924724|7924961 hsa-miR-3155a 0 1 0
chr19:7924724|7924961 hsa-miR-4290 1 1 0
chr19:7924724|7924961 hsa-miR-3615 0 1 0
chr19:7924724|7924961 hsa-miR-4449 0 1 0
chr19:7924724|7924961 hsa-miR-4469 1 0 0
chr19:7924724|7924961 hsa-miR-3155b 0 1 0
chr19:7924724|7924961 hsa-miR-4493 0 1 0
chr19:7924724|7924961 hsa-miR-3960 1 0 0
chr19:7924724|7924961 hsa-miR-4658 0 1 0
chr19:7924724|7924961 hsa-miR-4674 0 1 0
chr19:7924724|7924961 hsa-miR-4706 1 0 0
chr19:7924724|7924961 hsa-miR-4767 1 0 0
chr19:7924724|7924961 hsa-miR-5090 0 1 0
chr19:7924724|7924961 hsa-miR-5193 0 1 0
chr19:7924724|7924961 hsa-miR-11400 0 1 0
chr19:7924724|7924961 hsa-miR-6749-3p 1 1 0
chr19:7924724|7924961 hsa-miR-3194-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6836-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6892-3p 1 0 0
chr19:7924724|7924961 hsa-miR-486-5p 0 1 0
chr19:7924724|7924961 hsa-miR-139-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6727-5p 1 0 0
chr19:7924724|7924961 hsa-miR-3187-3p 1 0 0
chr19:7924724|7924961 hsa-miR-7110-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6845-3p 1 0 0
chr19:7924724|7924961 hsa-miR-3180-3p 1 1 0
chr19:7924724|7924961 hsa-miR-877-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6827-5p 0 1 0
chr19:7924724|7924961 hsa-miR-7113-3p 1 0 0
chr19:7924724|7924961 hsa-miR-3667-3p 1 0 0
chr19:7924724|7924961 hsa-miR-3191-5p 1 0 0
chr19:7924724|7924961 hsa-miR-3677-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6818-3p 0 1 0
chr19:7924724|7924961 hsa-miR-7111-3p 1 1 0
chr19:7924724|7924961 hsa-miR-6780a-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6830-3p 0 1 0
chr19:7924724|7924961 hsa-miR-4667-3p 1 1 0
chr19:7924724|7924961 hsa-miR-4640-3p 0 1 0
chr19:7924724|7924961 hsa-miR-3189-3p 1 1 0
chr19:7924724|7924961 hsa-miR-4646-3p 1 1 0
chr19:7924724|7924961 hsa-miR-597-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6895-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6886-3p 1 0 0
chr19:7924724|7924961 hsa-miR-5088-3p 1 0 0
chr19:7924724|7924961 hsa-miR-4749-3p 1 0 0
chr19:7924724|7924961 hsa-miR-328-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6770-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6859-3p 0 1 0
chr19:7924724|7924961 hsa-miR-4433a-5p 1 0 0
chr19:7924724|7924961 hsa-miR-3173-5p 0 1 0
chr19:7924724|7924961 hsa-miR-4433b-5p 1 0 0
chr19:7924724|7924961 hsa-miR-6846-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6780b-3p 1 1 0
chr19:7924724|7924961 hsa-miR-6800-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6816-5p 1 0 0
chr19:7924724|7924961 hsa-miR-3180 1 1 0
chr19:7924724|7924961 hsa-miR-6774-5p 0 1 0
chr19:7924724|7924961 hsa-miR-4685-3p 1 0 0
chr19:7924724|7924961 hsa-miR-3620-5p 1 0 0
chr19:7924724|7924961 hsa-miR-328-5p 1 0 0
chr19:7924724|7924961 hsa-miR-4749-5p 1 0 0
chr19:7924724|7924961 hsa-miR-4758-5p 1 0 0
chr19:7924724|7924961 hsa-miR-6799-3p 0 1 0
chr19:7924724|7924961 hsa-miR-10398-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6724-5p 1 1 0
chr19:7924724|7924961 hsa-miR-6791-5p 1 0 0
chr19:7924724|7924961 hsa-miR-6756-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6801-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6805-3p 1 1 0
chr19:7924724|7924961 hsa-miR-6810-3p 1 1 0
chr19:7924724|7924961 hsa-miR-483-3p 1 0 0
chr19:7924724|7924961 hsa-miR-6817-5p 0 1 0
chr19:7924724|7924961 hsa-miR-10397-5p 0 1 0
chr19:7924724|7924961 hsa-miR-6824-3p 0 1 0
chr19:7924724|7924961 hsa-miR-6764-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:7924724|7924961
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MPRRDQSPRTGSTLSQGGVDDGQTTGEGGGTRGSPLPGTHNSRA
Nucleotide Sequence CTGCCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACGACGGCCAGACAACAGGGGAGGGAGGAGGGACAAGGGGGTCCCCACTTCCAGGGACGCACAATAGCAGAGCC
CircID chr19:7924724|7924961
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MQRPPRGPGRACPAGTRAQGRAQHSVKVGLTTARQQGREEGQGGPHFQGRTIAEP
Nucleotide Sequence ATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGACGACGGCCAGACAACAGGGGAGGGAGGAGGGACAAGGGGGTCCCCACTTCCAGGGACGCACAATAGCAGAGCCA
CircID chr19:7924724|7924961
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MAGLRAPSPGQAVQGKLVCSVRPVGPGEPAPQGPEPKDGLNTQSRWG
Nucleotide Sequence ATGGCAGGCCTTCGGGCTCCGTCTCCGGGACAGGCGGTGCAGGGCAAATTGGTATGCAGCGTCCGCCCCGTGGGCCCGGGAGAGCCTGCCCCGCAGGGACCAGAGCCCAAGGACGGGCTCAACACTCAGTCAAGGTGGGGTTGA
CircID chr19:7924724|7924961
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MSPSLGSGPCGAGSPGPTGRTLHTNLPCTACPGDGARRPAMAAVSRM
Nucleotide Sequence TTGAGCCCGTCCTTGGGCTCTGGTCCCTGCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGAGCCCGAAGGCCTGCCATGGCGGCTGTGTCGAGGATG
CircID chr19:7924724|7924961
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MVPAGQALPGPRGGRCIPICPAPPVPETEPEGLPWRLCRGC
Nucleotide Sequence CTGGTCCCTGCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGAGCCCGAAGGCCTGCCATGGCGGCTGTGTCGAGGATGC
CircID chr19:7924724|7924961
ORF Type ORF6
Protein Length 27
Nucleotide Length 84
Protein Sequence MLLCVPGSGDPLVPPPSPVVWPSSTPP
Nucleotide Sequence CTGCTATTGTGCGTCCCTGGAAGTGGGGACCCCCTTGTCCCTCCTCCCTCCCCTGTTGTCTGGCCGTCGTCAACCCCACCTTGA
CircID chr19:7924724|7924961
ORF Type ORF7
Protein Length 49
Nucleotide Length 147
Protein Sequence MSVEPVLGLWSLRGRLSRAHGADAAYQFALHRLSRRRSPKACHGGCVED
Nucleotide Sequence CTGAGTGTTGAGCCCGTCCTTGGGCTCTGGTCCCTGCGGGGCAGGCTCTCCCGGGCCCACGGGGCGGACGCTGCATACCAATTTGCCCTGCACCGCCTGTCCCGGAGACGGAGCCCGAAGGCCTGCCATGGCGGCTGTGTCGAGGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab