CircRNA Information

General Information
circRNA Basic Information
CircID chr19:8257924|8258044
Strand -
CircType exon
Host Gene ENSG00000090661.10;
Algorism CIRI2;
Sequence GCTCTCTTCCTCATCTTCTCCTTTGTCTTCTTCTACACCCGACTGGTCCTCTTTCCCACCCAGTGAGTCAGCCCTCCCATGGGGGTCAGGGAGGTGGGAGGGCGTGTCTGAGATTCCAGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:8257924|8258044 hsa-miR-216a-5p 0 0 1
chr19:8257924|8258044 hsa-miR-216a-3p 0 0 1
chr19:8257924|8258044 hsa-miR-345-5p 0 0 1
chr19:8257924|8258044 hsa-miR-345-3p 0 0 1
chr19:8257924|8258044 hsa-miR-583 0 0 1
chr19:8257924|8258044 hsa-miR-1293 0 0 1
chr19:8257924|8258044 hsa-miR-1253 0 0 1
chr19:8257924|8258044 hsa-miR-1324 0 0 1
chr19:8257924|8258044 hsa-miR-532-3p 0 1 1
chr19:8257924|8258044 hsa-miR-1224-3p 0 1 1
chr19:8257924|8258044 hsa-miR-125a-5p 0 0 1
chr19:8257924|8258044 hsa-miR-1260 0 0 1
chr19:8257924|8258044 hsa-miR-1280 0 0 1
chr19:8257924|8258044 hsa-miR-125b 0 0 1
chr19:8257924|8258044 hsa-miR-611 1 0 0
chr19:8257924|8258044 hsa-miR-663a 1 0 0
chr19:8257924|8258044 hsa-miR-762 1 0 0
chr19:8257924|8258044 hsa-miR-1260a 0 1 0
chr19:8257924|8258044 hsa-miR-1268a 1 0 0
chr19:8257924|8258044 hsa-miR-3125 1 0 0
chr19:8257924|8258044 hsa-miR-4290 0 1 0
chr19:8257924|8258044 hsa-miR-3911 1 0 0
chr19:8257924|8258044 hsa-miR-1268b 1 0 0
chr19:8257924|8258044 hsa-miR-4428 1 0 0
chr19:8257924|8258044 hsa-miR-3689c 1 1 0
chr19:8257924|8258044 hsa-miR-4488 1 0 0
chr19:8257924|8258044 hsa-miR-4498 1 0 0
chr19:8257924|8258044 hsa-miR-4651 1 0 0
chr19:8257924|8258044 hsa-miR-4656 1 0 0
chr19:8257924|8258044 hsa-miR-4689 1 0 0
chr19:8257924|8258044 hsa-miR-4721 1 0 0
chr19:8257924|8258044 hsa-miR-4741 1 0 0
chr19:8257924|8258044 hsa-miR-4751 0 1 0
chr19:8257924|8258044 hsa-miR-5703 0 1 0
chr19:8257924|8258044 hsa-miR-6124 1 0 0
chr19:8257924|8258044 hsa-miR-6165 1 0 0
chr19:8257924|8258044 hsa-miR-8085 1 1 0
chr19:8257924|8258044 hsa-miR-12118 1 0 0
chr19:8257924|8258044 hsa-miR-6749-3p 0 1 0
chr19:8257924|8258044 hsa-miR-6747-5p 0 1 0
chr19:8257924|8258044 hsa-miR-6861-5p 1 0 0
chr19:8257924|8258044 hsa-miR-7106-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6799-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6728-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6833-5p 1 1 0
chr19:8257924|8258044 hsa-miR-3192-5p 1 0 0
chr19:8257924|8258044 hsa-miR-7847-3p 1 0 0
chr19:8257924|8258044 hsa-miR-6746-5p 1 0 0
chr19:8257924|8258044 hsa-miR-8069 1 0 0
chr19:8257924|8258044 hsa-miR-6817-3p 0 1 0
chr19:8257924|8258044 hsa-miR-6871-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6748-5p 1 1 0
chr19:8257924|8258044 hsa-miR-6772-5p 1 1 0
chr19:8257924|8258044 hsa-miR-185-3p 1 0 0
chr19:8257924|8258044 hsa-miR-3190-3p 1 0 0
chr19:8257924|8258044 hsa-miR-6760-5p 1 1 0
chr19:8257924|8258044 hsa-miR-30b-3p 0 1 0
chr19:8257924|8258044 hsa-miR-4713-5p 0 1 0
chr19:8257924|8258044 hsa-miR-5088-5p 1 0 0
chr19:8257924|8258044 hsa-miR-30c-2-3p 1 0 0
chr19:8257924|8258044 hsa-miR-7113-3p 0 1 0
chr19:8257924|8258044 hsa-miR-6847-5p 1 1 0
chr19:8257924|8258044 hsa-miR-4446-3p 1 1 0
chr19:8257924|8258044 hsa-miR-149-3p 1 0 0
chr19:8257924|8258044 hsa-miR-339-5p 1 0 0
chr19:8257924|8258044 hsa-miR-3158-3p 1 0 0
chr19:8257924|8258044 hsa-miR-4732-3p 0 1 0
chr19:8257924|8258044 hsa-miR-6778-3p 0 1 0
chr19:8257924|8258044 hsa-miR-6859-3p 0 1 0
chr19:8257924|8258044 hsa-miR-6880-3p 0 1 0
chr19:8257924|8258044 hsa-miR-3689b-3p 1 1 0
chr19:8257924|8258044 hsa-miR-6769b-5p 1 0 0
chr19:8257924|8258044 hsa-miR-5001-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6737-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6756-5p 1 1 0
chr19:8257924|8258044 hsa-miR-6769a-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6819-5p 1 0 0
chr19:8257924|8258044 hsa-miR-1249-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6779-5p 1 1 0
chr19:8257924|8258044 hsa-miR-6780a-5p 1 1 0
chr19:8257924|8258044 hsa-miR-6788-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6797-5p 1 0 0
chr19:8257924|8258044 hsa-miR-4728-5p 1 0 0
chr19:8257924|8258044 hsa-miR-5196-5p 1 0 0
chr19:8257924|8258044 hsa-miR-10396b-5p 1 0 0
chr19:8257924|8258044 hsa-miR-10526-3p 1 1 0
chr19:8257924|8258044 hsa-miR-328-5p 1 0 0
chr19:8257924|8258044 hsa-miR-3689a-3p 1 1 0
chr19:8257924|8258044 hsa-miR-4725-3p 1 0 0
chr19:8257924|8258044 hsa-miR-6795-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6846-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6848-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6883-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6887-5p 1 0 0
chr19:8257924|8258044 hsa-miR-4697-5p 1 0 0
chr19:8257924|8258044 hsa-miR-939-5p 1 0 0
chr19:8257924|8258044 hsa-miR-4758-5p 1 0 0
chr19:8257924|8258044 hsa-miR-6739-5p 0 1 0
chr19:8257924|8258044 hsa-miR-6856-5p 1 1 0
chr19:8257924|8258044 hsa-miR-3173-3p 0 1 0
chr19:8257924|8258044 hsa-miR-4747-5p 1 1 0
chr19:8257924|8258044 hsa-miR-6891-5p 1 1 0
chr19:8257924|8258044 hsa-miR-6766-5p 0 1 0
chr19:8257924|8258044 hsa-miR-6785-5p 1 1 0
chr19:8257924|8258044 hsa-miR-6822-5p 1 0 0
chr19:8257924|8258044 hsa-miR-4756-5p 0 1 0
chr19:8257924|8258044 hsa-miR-619-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:8257924|8258044
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MSSSTPDWSSFPPSESALPWGSGRWEGVSEIPG
Nucleotide Sequence TTGTCTTCTTCTACACCCGACTGGTCCTCTTTCCCACCCAGTGAGTCAGCCCTCCCATGGGGGTCAGGGAGGTGGGAGGGCGTGTCTGAGATTCCAGGA
CircID chr19:8257924|8258044
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence LESQTRPPTSLTPMGGLTHWVGKRTSRV
Nucleotide Sequence CTGGAATCTCAGACACGCCCTCCCACCTCCCTGACCCCCATGGGAGGGCTGACTCACTGGGTGGGAAAGAGGACCAGTCGGGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab