CircRNA Information

General Information
circRNA Basic Information
CircID chr19:828283|830797
Strand +
CircType exon
Host Gene ENSG00000172232.8;
Algorism CIRI2;
Sequence CTGGCATCTGGTGCCGGCTTCCACCGTGGCGTTCTGCAGAGGCAGTGGCAGTATCGTCACGCTGCTGGTGAGGTTGGCCTCACGGTCCAGCTGAAGCAGCATCAGGTCGTTCAGGTTCTGCTGGGGGTCGTAGCCATTCTCGCTCATGCTGCTGATGGAAAACGTCTGGCGGGACTGCCTCTCCCGCCGCCTCAGGTCATAGGCACCCAGCACCACGGTGCTAACCCCGGGGTTCTGGCTTTGGAAGCAGCTGGCCGCGGTCATCACGAAGCGGGCATGGATCAGGGCACCCCCGCAGAAGTGCCTGCCTTGATTCTGAATGGAGGCCAGGAACGGGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:828283|830797 hsa-miR-15a-5p 0 0 1
chr19:828283|830797 hsa-miR-15a-3p 0 0 1
chr19:828283|830797 hsa-miR-29a-5p 0 0 1
chr19:828283|830797 hsa-miR-29a-3p 0 0 1
chr19:828283|830797 hsa-miR-107 0 1 1
chr19:828283|830797 hsa-miR-214-5p 0 0 1
chr19:828283|830797 hsa-miR-214-3p 0 0 1
chr19:828283|830797 hsa-miR-15b-5p 0 0 1
chr19:828283|830797 hsa-miR-15b-3p 0 0 1
chr19:828283|830797 hsa-miR-136-5p 0 0 1
chr19:828283|830797 hsa-miR-136-3p 0 0 1
chr19:828283|830797 hsa-miR-195-5p 0 0 1
chr19:828283|830797 hsa-miR-195-3p 0 0 1
chr19:828283|830797 hsa-miR-29c-5p 0 0 1
chr19:828283|830797 hsa-miR-29c-3p 0 0 1
chr19:828283|830797 hsa-miR-424-5p 0 0 1
chr19:828283|830797 hsa-miR-424-3p 0 0 1
chr19:828283|830797 hsa-miR-497-5p 0 0 1
chr19:828283|830797 hsa-miR-497-3p 0 0 1
chr19:828283|830797 hsa-miR-503-5p 0 0 1
chr19:828283|830797 hsa-miR-503-3p 0 0 1
chr19:828283|830797 hsa-miR-587 0 0 1
chr19:828283|830797 hsa-miR-631 0 0 1
chr19:828283|830797 hsa-miR-634 0 0 1
chr19:828283|830797 hsa-miR-640 0 1 1
chr19:828283|830797 hsa-miR-298 0 0 1
chr19:828283|830797 hsa-miR-874-5p 0 0 1
chr19:828283|830797 hsa-miR-874-3p 0 0 1
chr19:828283|830797 hsa-miR-744-5p 0 0 1
chr19:828283|830797 hsa-miR-744-3p 0 0 1
chr19:828283|830797 hsa-miR-922 0 1 1
chr19:828283|830797 hsa-miR-940 0 0 1
chr19:828283|830797 hsa-miR-1226-5p 0 0 1
chr19:828283|830797 hsa-miR-1226-3p 0 0 1
chr19:828283|830797 hsa-miR-1205 0 0 1
chr19:828283|830797 hsa-miR-1827 0 0 1
chr19:828283|830797 hsa-miR-671-5p 0 0 1
chr19:828283|830797 hsa-miR-146b-3p 0 0 1
chr19:828283|830797 hsa-miR-1184 0 0 1
chr19:828283|830797 hsa-miR-361-3p 0 1 1
chr19:828283|830797 hsa-miR-1207-3p 0 0 1
chr19:828283|830797 hsa-miR-342-5p 0 1 1
chr19:828283|830797 hsa-miR-516a-3p 0 0 1
chr19:828283|830797 hsa-miR-103 0 0 1
chr19:828283|830797 hsa-miR-16 0 0 1
chr19:828283|830797 hsa-miR-29b 0 0 1
chr19:828283|830797 hsa-miR-762 1 0 0
chr19:828283|830797 hsa-miR-4316 0 1 0
chr19:828283|830797 hsa-miR-4252 0 1 0
chr19:828283|830797 hsa-miR-4467 0 1 0
chr19:828283|830797 hsa-miR-4530 1 1 0
chr19:828283|830797 hsa-miR-3960 0 1 0
chr19:828283|830797 hsa-miR-5708 0 1 0
chr19:828283|830797 hsa-miR-6079 0 1 0
chr19:828283|830797 hsa-miR-8072 1 1 0
chr19:828283|830797 hsa-miR-8085 0 1 0
chr19:828283|830797 hsa-miR-12119 0 1 0
chr19:828283|830797 hsa-miR-4665-3p 1 0 0
chr19:828283|830797 hsa-miR-6765-5p 0 1 0
chr19:828283|830797 hsa-miR-7114-5p 1 0 0
chr19:828283|830797 hsa-miR-6746-5p 0 1 0
chr19:828283|830797 hsa-miR-6741-5p 1 1 0
chr19:828283|830797 hsa-miR-6762-3p 0 1 0
chr19:828283|830797 hsa-miR-5589-5p 0 1 0
chr19:828283|830797 hsa-miR-3190-3p 0 1 0
chr19:828283|830797 hsa-miR-6850-5p 1 0 0
chr19:828283|830797 hsa-miR-103a-3p 1 1 0
chr19:828283|830797 hsa-miR-490-3p 1 1 0
chr19:828283|830797 hsa-miR-1250-5p 1 0 0
chr19:828283|830797 hsa-miR-6872-3p 1 1 0
chr19:828283|830797 hsa-miR-1914-5p 1 0 0
chr19:828283|830797 hsa-miR-6773-3p 0 1 0
chr19:828283|830797 hsa-miR-5189-3p 0 1 0
chr19:828283|830797 hsa-miR-6859-3p 0 1 0
chr19:828283|830797 hsa-miR-4649-3p 0 1 0
chr19:828283|830797 hsa-miR-7152-5p 0 1 0
chr19:828283|830797 hsa-miR-6890-3p 0 1 0
chr19:828283|830797 hsa-miR-10400-5p 1 0 0
chr19:828283|830797 hsa-miR-4763-3p 1 0 0
chr19:828283|830797 hsa-miR-5001-5p 1 0 0
chr19:828283|830797 hsa-miR-6815-5p 0 1 0
chr19:828283|830797 hsa-miR-6842-5p 0 1 0
chr19:828283|830797 hsa-miR-10392-5p 0 1 0
chr19:828283|830797 hsa-miR-4649-5p 1 0 0
chr19:828283|830797 hsa-miR-34b-5p 0 1 0
chr19:828283|830797 hsa-miR-3085-5p 1 0 0
chr19:828283|830797 hsa-miR-4664-5p 0 1 0
chr19:828283|830797 hsa-miR-324-3p 0 1 0
chr19:828283|830797 hsa-miR-6791-5p 1 0 0
chr19:828283|830797 hsa-miR-4757-5p 1 1 0
chr19:828283|830797 hsa-miR-9851-3p 0 1 0
chr19:828283|830797 hsa-miR-2682-5p 0 1 0
chr19:828283|830797 hsa-miR-6838-5p 1 0 0
chr19:828283|830797 hsa-miR-3922-3p 0 1 0
chr19:828283|830797 hsa-miR-4670-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:828283|830797
ORF Type ORF1
Protein Length 113
Nucleotide Length 339
Protein Sequence LASGAGFHRGVLQRQWQYRHAAGEVGLTVQLKQHQVVQVLLGVVAILAHAADGKRLAGLPLPPPQVIGTQHHGANPGVLALEAAGRGHHEAGMDQGTPAEVPALILNGGQERE
Nucleotide Sequence CTGGCATCTGGTGCCGGCTTCCACCGTGGCGTTCTGCAGAGGCAGTGGCAGTATCGTCACGCTGCTGGTGAGGTTGGCCTCACGGTCCAGCTGAAGCAGCATCAGGTCGTTCAGGTTCTGCTGGGGGTCGTAGCCATTCTCGCTCATGCTGCTGATGGAAAACGTCTGGCGGGACTGCCTCTCCCGCCGCCTCAGGTCATAGGCACCCAGCACCACGGTGCTAACCCCGGGGTTCTGGCTTTGGAAGCAGCTGGCCGCGGTCATCACGAAGCGGGCATGGATCAGGGCACCCCCGCAGAAGTGCCTGCCTTGATTCTGAATGGAGGCCAGGAACGGGAA

CircID chr19:828283|830797
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MVPASTVAFCRGSGSIVTLLVRLASRSS
Nucleotide Sequence CTGGTGCCGGCTTCCACCGTGGCGTTCTGCAGAGGCAGTGGCAGTATCGTCACGCTGCTGGTGAGGTTGGCCTCACGGTCCAGCTGA

CircID chr19:828283|830797
ORF Type ORF3
Protein Length 110
Nucleotide Length 330
Protein Sequence MASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQ
Nucleotide Sequence CTGGCCTCCATTCAGAATCAAGGCAGGCACTTCTGCGGGGGTGCCCTGATCCATGCCCGCTTCGTGATGACCGCGGCCAGCTGCTTCCAAAGCCAGAACCCCGGGGTTAGCACCGTGGTGCTGGGTGCCTATGACCTGAGGCGGCGGGAGAGGCAGTCCCGCCAGACGTTTTCCATCAGCAGCATGAGCGAGAATGGCTACGACCCCCAGCAGAACCTGAACGACCTGATGCTGCTTCAGCTGGACCGTGAGGCCAACCTCACCAGCAGCGTGACGATACTGCCACTGCCTCTGCAGAACGCCACGGTGGAAGCCGGCACCAGATGCCAG

CircID chr19:828283|830797
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MRGCPDPCPLRDDRGQLLPKPEPRG
Nucleotide Sequence CTGCGGGGGTGCCCTGATCCATGCCCGCTTCGTGATGACCGCGGCCAGCTGCTTCCAAAGCCAGAACCCCGGGGTTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites