CircRNA Information

General Information
circRNA Basic Information
CircID chr19:897191|897418
Strand +
CircType exon
Host Gene ENSG00000198858.8;
Algorism CIRI2;
Sequence CCCGCTGCCACCTCGCCCAGCCATCAAGCCCTCCGATACCTTCGGCTAAAATATCTTTCATATTTTTAGAATTTGTCCTCGGAAACCTTTTTCGCTTGGGGTGGTCTCTCTCACTCTGCCCCCTCCTCACGCAGCTCTTGGCAGTCAACAGACGCTGGCGGCTGGGGCTGCCCATGCCATCCCAGCTCCAAGCTTCCCACTCCGGGACTTGTGTTTGGGTGGGGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:897191|897418 hsa-miR-335-5p 0 0 1
chr19:897191|897418 hsa-miR-335-3p 0 0 1
chr19:897191|897418 hsa-miR-432-5p 0 0 1
chr19:897191|897418 hsa-miR-432-3p 0 0 1
chr19:897191|897418 hsa-miR-558 0 0 1
chr19:897191|897418 hsa-miR-611 0 0 1
chr19:897191|897418 hsa-miR-943 0 0 1
chr19:897191|897418 hsa-miR-1267 0 0 1
chr19:897191|897418 hsa-miR-486-3p 0 0 1
chr19:897191|897418 hsa-miR-885-3p 0 0 1
chr19:897191|897418 hsa-miR-548c-3p 0 0 1
chr19:897191|897418 hsa-miR-608 1 0 0
chr19:897191|897418 hsa-miR-638 1 0 0
chr19:897191|897418 hsa-miR-663a 1 0 0
chr19:897191|897418 hsa-miR-658 1 0 0
chr19:897191|897418 hsa-miR-762 1 0 0
chr19:897191|897418 hsa-miR-665 1 0 0
chr19:897191|897418 hsa-miR-1231 1 0 0
chr19:897191|897418 hsa-miR-3131 1 0 0
chr19:897191|897418 hsa-miR-3196 1 0 0
chr19:897191|897418 hsa-miR-4281 1 0 0
chr19:897191|897418 hsa-miR-3652 1 0 0
chr19:897191|897418 hsa-miR-4430 1 0 0
chr19:897191|897418 hsa-miR-4487 1 0 0
chr19:897191|897418 hsa-miR-4488 1 0 0
chr19:897191|897418 hsa-miR-4492 1 0 0
chr19:897191|897418 hsa-miR-4505 1 0 0
chr19:897191|897418 hsa-miR-2392 1 0 0
chr19:897191|897418 hsa-miR-4651 1 0 0
chr19:897191|897418 hsa-miR-4656 1 0 0
chr19:897191|897418 hsa-miR-4688 1 0 0
chr19:897191|897418 hsa-miR-4689 1 0 0
chr19:897191|897418 hsa-miR-4706 1 0 0
chr19:897191|897418 hsa-miR-4721 1 0 0
chr19:897191|897418 hsa-miR-5090 1 0 0
chr19:897191|897418 hsa-miR-5787 1 0 0
chr19:897191|897418 hsa-miR-6133 1 0 0
chr19:897191|897418 hsa-miR-7150 1 0 0
chr19:897191|897418 hsa-miR-12121 1 0 0
chr19:897191|897418 hsa-miR-4433b-3p 1 0 0
chr19:897191|897418 hsa-miR-92a-1-5p 1 0 0
chr19:897191|897418 hsa-miR-6734-5p 1 0 0
chr19:897191|897418 hsa-miR-6765-5p 1 0 0
chr19:897191|897418 hsa-miR-7106-5p 1 0 0
chr19:897191|897418 hsa-miR-6825-5p 1 0 0
chr19:897191|897418 hsa-miR-4687-3p 1 0 0
chr19:897191|897418 hsa-miR-6799-5p 1 0 0
chr19:897191|897418 hsa-miR-6510-5p 1 0 0
chr19:897191|897418 hsa-miR-4695-5p 1 0 0
chr19:897191|897418 hsa-miR-4709-3p 1 0 0
chr19:897191|897418 hsa-miR-6890-5p 1 0 0
chr19:897191|897418 hsa-miR-4474-3p 1 0 0
chr19:897191|897418 hsa-miR-8069 1 0 0
chr19:897191|897418 hsa-miR-6742-5p 1 0 0
chr19:897191|897418 hsa-miR-491-5p 1 0 0
chr19:897191|897418 hsa-miR-3180-3p 1 0 0
chr19:897191|897418 hsa-miR-6829-5p 1 0 0
chr19:897191|897418 hsa-miR-6732-5p 1 0 0
chr19:897191|897418 hsa-miR-6805-5p 1 0 0
chr19:897191|897418 hsa-miR-1224-5p 1 0 0
chr19:897191|897418 hsa-miR-6821-5p 1 0 0
chr19:897191|897418 hsa-miR-7855-5p 1 0 0
chr19:897191|897418 hsa-miR-5006-5p 1 0 0
chr19:897191|897418 hsa-miR-6835-5p 1 0 0
chr19:897191|897418 hsa-miR-1229-5p 1 0 0
chr19:897191|897418 hsa-miR-296-3p 1 0 0
chr19:897191|897418 hsa-miR-6771-5p 1 0 0
chr19:897191|897418 hsa-miR-3648 1 0 0
chr19:897191|897418 hsa-miR-4446-3p 1 0 0
chr19:897191|897418 hsa-miR-6877-5p 1 0 0
chr19:897191|897418 hsa-miR-423-5p 1 0 0
chr19:897191|897418 hsa-miR-6814-5p 1 0 0
chr19:897191|897418 hsa-miR-10400-5p 1 0 0
chr19:897191|897418 hsa-miR-1233-5p 1 0 0
chr19:897191|897418 hsa-miR-4763-3p 1 0 0
chr19:897191|897418 hsa-miR-6769b-5p 1 0 0
chr19:897191|897418 hsa-miR-6778-5p 1 0 0
chr19:897191|897418 hsa-miR-6787-5p 1 0 0
chr19:897191|897418 hsa-miR-6816-5p 1 0 0
chr19:897191|897418 hsa-miR-6865-5p 1 0 0
chr19:897191|897418 hsa-miR-1343-5p 1 0 0
chr19:897191|897418 hsa-miR-6737-5p 1 0 0
chr19:897191|897418 hsa-miR-6743-5p 1 0 0
chr19:897191|897418 hsa-miR-6756-5p 1 0 0
chr19:897191|897418 hsa-miR-6803-5p 1 0 0
chr19:897191|897418 hsa-miR-6819-5p 1 0 0
chr19:897191|897418 hsa-miR-6851-5p 1 0 0
chr19:897191|897418 hsa-miR-11181-3p 1 0 0
chr19:897191|897418 hsa-miR-1249-5p 1 0 0
chr19:897191|897418 hsa-miR-6763-5p 1 0 0
chr19:897191|897418 hsa-miR-6779-5p 1 0 0
chr19:897191|897418 hsa-miR-6780a-5p 1 0 0
chr19:897191|897418 hsa-miR-6797-5p 1 0 0
chr19:897191|897418 hsa-miR-7111-5p 1 0 0
chr19:897191|897418 hsa-miR-3620-5p 1 0 0
chr19:897191|897418 hsa-miR-4728-5p 1 0 0
chr19:897191|897418 hsa-miR-5196-5p 1 0 0
chr19:897191|897418 hsa-miR-6780b-5p 1 0 0
chr19:897191|897418 hsa-miR-10396b-5p 1 0 0
chr19:897191|897418 hsa-miR-1237-5p 1 0 0
chr19:897191|897418 hsa-miR-328-5p 1 0 0
chr19:897191|897418 hsa-miR-4632-5p 1 0 0
chr19:897191|897418 hsa-miR-4685-5p 1 0 0
chr19:897191|897418 hsa-miR-4726-5p 1 0 0
chr19:897191|897418 hsa-miR-4745-5p 1 0 0
chr19:897191|897418 hsa-miR-6738-5p 1 0 0
chr19:897191|897418 hsa-miR-6794-5p 1 0 0
chr19:897191|897418 hsa-miR-6795-5p 1 0 0
chr19:897191|897418 hsa-miR-6846-5p 1 0 0
chr19:897191|897418 hsa-miR-6848-5p 1 0 0
chr19:897191|897418 hsa-miR-6858-5p 1 0 0
chr19:897191|897418 hsa-miR-6887-5p 1 0 0
chr19:897191|897418 hsa-miR-6845-5p 1 0 0
chr19:897191|897418 hsa-miR-6885-5p 1 0 0
chr19:897191|897418 hsa-miR-939-5p 1 0 0
chr19:897191|897418 hsa-miR-1238-5p 1 0 0
chr19:897191|897418 hsa-miR-4758-5p 1 0 0
chr19:897191|897418 hsa-miR-10398-3p 1 0 0
chr19:897191|897418 hsa-miR-4646-5p 1 0 0
chr19:897191|897418 hsa-miR-6891-5p 1 0 0
chr19:897191|897418 hsa-miR-6785-5p 1 0 0
chr19:897191|897418 hsa-miR-4667-5p 1 0 0
chr19:897191|897418 hsa-miR-3184-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:897191|897418
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MSSETFFAWGGLSHSAPSSRSSWQSTDAGGWGCPCHPSSKLPTPGLVFGWGD
Nucleotide Sequence TTGTCCTCGGAAACCTTTTTCGCTTGGGGTGGTCTCTCTCACTCTGCCCCCTCCTCACGCAGCTCTTGGCAGTCAACAGACGCTGGCGGCTGGGGCTGCCCATGCCATCCCAGCTCCAAGCTTCCCACTCCGGGACTTGTGTTTGGGTGGGGAGAC
CircID chr19:897191|897418
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MPPPHAALGSQQTLAAGAAHAIPAPSFPLRDLCLGGE
Nucleotide Sequence CTGCCCCCTCCTCACGCAGCTCTTGGCAGTCAACAGACGCTGGCGGCTGGGGCTGCCCATGCCATCCCAGCTCCAAGCTTCCCACTCCGGGACTTGTGTTTGGGTGGGGAG
CircID chr19:897191|897418
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MGWSLSLCPLLTQLLAVNRRWRLGLPMPSQLQASHSGTCVWVGR
Nucleotide Sequence TTGGGGTGGTCTCTCTCACTCTGCCCCCTCCTCACGCAGCTCTTGGCAGTCAACAGACGCTGGCGGCTGGGGCTGCCCATGCCATCCCAGCTCCAAGCTTCCCACTCCGGGACTTGTGTTTGGGTGGGGAGA
CircID chr19:897191|897418
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MELGWHGQPQPPASVDCQELREEGAE
Nucleotide Sequence TTGGAGCTGGGATGGCATGGGCAGCCCCAGCCGCCAGCGTCTGTTGACTGCCAAGAGCTGCGTGAGGAGGGGGCAGAGTGA
CircID chr19:897191|897418
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MGSPSRQRLLTAKSCVRRGQSERDHPKRKRFPRTNSKNMKDILAEGIGGLDGWARWQR
Nucleotide Sequence ATGGGCAGCCCCAGCCGCCAGCGTCTGTTGACTGCCAAGAGCTGCGTGAGGAGGGGGCAGAGTGAGAGAGACCACCCCAAGCGAAAAAGGTTTCCGAGGACAAATTCTAAAAATATGAAAGATATTTTAGCCGAAGGTATCGGAGGGCTTGATGGCTGGGCGAGGTGGCAGCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab