CircRNA Information

General Information
circRNA Basic Information
CircID chr1:1053775|1053900
Strand -
CircType exon
Host Gene ENSG00000188157.12;
Algorism CIRI2;
Sequence CACTTTGAACTGAGCCTGCGCACTGAGGCCACGCAGGGGCTGGTGCTCTGGAGTGGCAAGGCCACGGAGCGGGCAGACTATGTGGCACTGGCCATTGTGGACGGGCACCTGCAACTGAGCTACAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:1053775|1053900 hsa-miR-29a-5p 0 0 1
chr1:1053775|1053900 hsa-miR-29a-3p 0 0 1
chr1:1053775|1053900 hsa-miR-148a-5p 0 0 1
chr1:1053775|1053900 hsa-miR-148a-3p 0 0 1
chr1:1053775|1053900 hsa-miR-152-5p 0 0 1
chr1:1053775|1053900 hsa-miR-152-3p 0 0 1
chr1:1053775|1053900 hsa-miR-29c-5p 0 0 1
chr1:1053775|1053900 hsa-miR-29c-3p 0 0 1
chr1:1053775|1053900 hsa-miR-148b-5p 0 0 1
chr1:1053775|1053900 hsa-miR-148b-3p 0 0 1
chr1:1053775|1053900 hsa-miR-346 1 0 1
chr1:1053775|1053900 hsa-miR-484 0 0 1
chr1:1053775|1053900 hsa-miR-520g-5p 0 0 1
chr1:1053775|1053900 hsa-miR-520g-3p 0 0 1
chr1:1053775|1053900 hsa-miR-520h 0 0 1
chr1:1053775|1053900 hsa-miR-657 0 0 1
chr1:1053775|1053900 hsa-miR-933 0 0 1
chr1:1053775|1053900 hsa-miR-1226-5p 0 0 1
chr1:1053775|1053900 hsa-miR-1226-3p 0 0 1
chr1:1053775|1053900 hsa-miR-1227-5p 0 0 1
chr1:1053775|1053900 hsa-miR-1227-3p 0 0 1
chr1:1053775|1053900 hsa-miR-1204 0 0 1
chr1:1053775|1053900 hsa-miR-1247-5p 0 0 1
chr1:1053775|1053900 hsa-miR-1247-3p 0 0 1
chr1:1053775|1053900 hsa-miR-1825 0 0 1
chr1:1053775|1053900 hsa-miR-525-5p 0 0 1
chr1:1053775|1053900 hsa-miR-508-5p 0 0 1
chr1:1053775|1053900 hsa-miR-324-3p 0 0 1
chr1:1053775|1053900 hsa-miR-520a-5p 0 0 1
chr1:1053775|1053900 hsa-miR-24 0 0 1
chr1:1053775|1053900 hsa-miR-768-3p 0 0 1
chr1:1053775|1053900 hsa-miR-29b 0 0 1
chr1:1053775|1053900 hsa-miR-3193 0 1 0
chr1:1053775|1053900 hsa-miR-4322 1 0 0
chr1:1053775|1053900 hsa-miR-4767 1 0 0
chr1:1053775|1053900 hsa-miR-4435 0 1 0
chr1:1053775|1053900 hsa-miR-132-5p 0 1 0
chr1:1053775|1053900 hsa-miR-214-5p 0 1 0
chr1:1053775|1053900 hsa-miR-3663-3p 0 1 0
chr1:1053775|1053900 hsa-miR-3677-5p 0 1 0
chr1:1053775|1053900 hsa-miR-24-3p 0 1 0
chr1:1053775|1053900 hsa-miR-6821-5p 0 1 0
chr1:1053775|1053900 hsa-miR-221-3p 0 1 0
chr1:1053775|1053900 hsa-miR-6769a-3p 0 1 0
chr1:1053775|1053900 hsa-miR-4707-5p 1 0 0
chr1:1053775|1053900 hsa-miR-1307-3p 1 0 0
chr1:1053775|1053900 hsa-miR-3180-5p 0 1 0
chr1:1053775|1053900 hsa-miR-3605-3p 0 1 0
chr1:1053775|1053900 hsa-miR-624-5p 0 1 0
chr1:1053775|1053900 hsa-miR-4520-5p 0 1 0
chr1:1053775|1053900 hsa-miR-4757-5p 1 0 0
chr1:1053775|1053900 hsa-miR-6829-3p 1 0 0
chr1:1053775|1053900 hsa-miR-9851-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:1053775|1053900
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MSLRTEATQGLVLWSGKATERADYVALAIVDGHLQLSYN
Nucleotide Sequence CTGAGCCTGCGCACTGAGGCCACGCAGGGGCTGGTGCTCTGGAGTGGCAAGGCCACGGAGCGGGCAGACTATGTGGCACTGGCCATTGTGGACGGGCACCTGCAACTGAGCTACAAC
CircID chr1:1053775|1053900
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MRPRRGWCSGVARPRSGQTMWHWPLWTGTCN
Nucleotide Sequence CTGAGGCCACGCAGGGGCTGGTGCTCTGGAGTGGCAAGGCCACGGAGCGGGCAGACTATGTGGCACTGGCCATTGTGGACGGGCACCTGCAACTGA
CircID chr1:1053775|1053900
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MEWQGHGAGRLCGTGHCGRAPATELQ
Nucleotide Sequence CTGGAGTGGCAAGGCCACGGAGCGGGCAGACTATGTGGCACTGGCCATTGTGGACGGGCACCTGCAACTGAGCTACAA
CircID chr1:1053775|1053900
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MQVPVHNGQCHIVCPLRGLATPEHQPLRGLSAQAQFKV
Nucleotide Sequence TTGCAGGTGCCCGTCCACAATGGCCAGTGCCACATAGTCTGCCCGCTCCGTGGCCTTGCCACTCCAGAGCACCAGCCCCTGCGTGGCCTCAGTGCGCAGGCTCAGTTCAAAGTG
CircID chr1:1053775|1053900
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MPAPWPCHSRAPAPAWPQCAGSVQS
Nucleotide Sequence CTGCCCGCTCCGTGGCCTTGCCACTCCAGAGCACCAGCCCCTGCGTGGCCTCAGTGCGCAGGCTCAGTTCAAAGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab