CircRNA Information

General Information
circRNA Basic Information
CircID chr1:108157462|108157607
Strand -
CircType exon
Host Gene ENSG00000085491.14;
Algorism CIRI2;
Sequence CTGCATCATGATTTTCAGACGGTCCAAAGGGGCAGTGCTTGTTCGAGAGACAGCACCAGCAATGCCTCCTGCCAAAAGCTGCCTCCACCATTGTCCGGATTTTTTTTCGTCTTCCGTGAATTCATCTGGAATAGTTAAGCTATCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:108157462|108157607 hsa-miR-21-5p 0 0 1
chr1:108157462|108157607 hsa-miR-21-3p 0 0 1
chr1:108157462|108157607 hsa-miR-96-5p 0 0 1
chr1:108157462|108157607 hsa-miR-96-3p 0 0 1
chr1:108157462|108157607 hsa-miR-182-5p 0 0 1
chr1:108157462|108157607 hsa-miR-182-3p 0 0 1
chr1:108157462|108157607 hsa-miR-433-5p 0 0 1
chr1:108157462|108157607 hsa-miR-433-3p 0 0 1
chr1:108157462|108157607 hsa-miR-593-5p 0 0 1
chr1:108157462|108157607 hsa-miR-593-3p 0 0 1
chr1:108157462|108157607 hsa-miR-626 0 0 1
chr1:108157462|108157607 hsa-miR-650 1 1 1
chr1:108157462|108157607 hsa-miR-1271-5p 0 0 1
chr1:108157462|108157607 hsa-miR-1271-3p 0 0 1
chr1:108157462|108157607 hsa-miR-1256 0 0 1
chr1:108157462|108157607 hsa-miR-1322 0 0 1
chr1:108157462|108157607 hsa-miR-1827 0 0 1
chr1:108157462|108157607 hsa-miR-525-5p 0 0 1
chr1:108157462|108157607 hsa-miR-1207-5p 0 0 1
chr1:108157462|108157607 hsa-miR-324-3p 0 0 1
chr1:108157462|108157607 hsa-miR-520a-5p 0 0 1
chr1:108157462|108157607 hsa-miR-590-5p 0 0 1
chr1:108157462|108157607 hsa-miR-548c-3p 0 0 1
chr1:108157462|108157607 hsa-miR-7 0 0 1
chr1:108157462|108157607 hsa-miR-138 0 0 1
chr1:108157462|108157607 hsa-miR-3612 0 1 0
chr1:108157462|108157607 hsa-miR-3937 1 0 0
chr1:108157462|108157607 hsa-miR-4442 1 1 0
chr1:108157462|108157607 hsa-miR-3960 1 0 0
chr1:108157462|108157607 hsa-miR-4688 1 0 0
chr1:108157462|108157607 hsa-miR-5090 1 0 0
chr1:108157462|108157607 hsa-miR-6125 1 0 0
chr1:108157462|108157607 hsa-miR-7150 0 1 0
chr1:108157462|108157607 hsa-miR-8052 1 0 0
chr1:108157462|108157607 hsa-miR-12114 1 0 0
chr1:108157462|108157607 hsa-miR-138-5p 1 1 0
chr1:108157462|108157607 hsa-miR-6765-5p 1 0 0
chr1:108157462|108157607 hsa-miR-4687-3p 1 0 0
chr1:108157462|108157607 hsa-miR-125a-3p 0 1 0
chr1:108157462|108157607 hsa-miR-766-5p 1 0 0
chr1:108157462|108157607 hsa-miR-6880-5p 1 1 0
chr1:108157462|108157607 hsa-miR-7847-3p 1 0 0
chr1:108157462|108157607 hsa-miR-4695-5p 1 1 0
chr1:108157462|108157607 hsa-miR-6746-5p 1 0 0
chr1:108157462|108157607 hsa-miR-4722-5p 1 1 0
chr1:108157462|108157607 hsa-miR-6727-5p 1 0 0
chr1:108157462|108157607 hsa-miR-8069 1 0 0
chr1:108157462|108157607 hsa-miR-486-3p 1 0 0
chr1:108157462|108157607 hsa-miR-6782-5p 1 0 0
chr1:108157462|108157607 hsa-miR-6786-5p 1 0 0
chr1:108157462|108157607 hsa-miR-1228-5p 1 0 0
chr1:108157462|108157607 hsa-let-7i-5p 1 0 0
chr1:108157462|108157607 hsa-miR-208a-5p 0 1 0
chr1:108157462|108157607 hsa-miR-10400-5p 1 0 0
chr1:108157462|108157607 hsa-miR-4763-3p 1 1 0
chr1:108157462|108157607 hsa-miR-6787-5p 1 0 0
chr1:108157462|108157607 hsa-miR-6743-5p 1 0 0
chr1:108157462|108157607 hsa-miR-6756-5p 1 0 0
chr1:108157462|108157607 hsa-miR-328-5p 1 0 0
chr1:108157462|108157607 hsa-miR-449c-5p 1 0 0
chr1:108157462|108157607 hsa-miR-939-5p 1 0 0
chr1:108157462|108157607 hsa-miR-3619-5p 1 0 0
chr1:108157462|108157607 hsa-miR-520a-3p 0 1 0
chr1:108157462|108157607 hsa-miR-5579-3p 0 1 0
chr1:108157462|108157607 hsa-miR-208b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:108157462|108157607
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence LHHDFQTVQRGSACSRDSTSNASCQKLPPPLSGFFFVFREFIWNS
Nucleotide Sequence CTGCATCATGATTTTCAGACGGTCCAAAGGGGCAGTGCTTGTTCGAGAGACAGCACCAGCAATGCCTCCTGCCAAAAGCTGCCTCCACCATTGTCCGGATTTTTTTTCGTCTTCCGTGAATTCATCTGGAATAGTTAA
CircID chr1:108157462|108157607
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MIFRRSKGAVLVRETAPAMPPAKSCLHHCPDFFSSSVNSSGIVKLS
Nucleotide Sequence ATGATTTTCAGACGGTCCAAAGGGGCAGTGCTTGTTCGAGAGACAGCACCAGCAATGCCTCCTGCCAAAAGCTGCCTCCACCATTGTCCGGATTTTTTTTCGTCTTCCGTGAATTCATCTGGAATAGTTAAGCTATCC
CircID chr1:108157462|108157607
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MFERQHQQCLLPKAASTIVRIFFRLP
Nucleotide Sequence TTGTTCGAGAGACAGCACCAGCAATGCCTCCTGCCAAAAGCTGCCTCCACCATTGTCCGGATTTTTTTTCGTCTTCCGTGA
CircID chr1:108157462|108157607
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MNSRKTKKNPDNGGGSFWQEALLVLSLEQALPLWTV
Nucleotide Sequence ATGAATTCACGGAAGACGAAAAAAAATCCGGACAATGGTGGAGGCAGCTTTTGGCAGGAGGCATTGCTGGTGCTGTCTCTCGAACAAGCACTGCCCCTTTGGACCGTCTGA
CircID chr1:108157462|108157607
ORF Type ORF5
Protein Length 30
Nucleotide Length 90
Protein Sequence MVEAAFGRRHCWCCLSNKHCPFGPSENHDA
Nucleotide Sequence ATGGTGGAGGCAGCTTTTGGCAGGAGGCATTGCTGGTGCTGTCTCTCGAACAAGCACTGCCCCTTTGGACCGTCTGAAAATCATGATGCA
CircID chr1:108157462|108157607
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MAGGIAGAVSRTSTAPLDRLKIMMQ
Nucleotide Sequence TTGGCAGGAGGCATTGCTGGTGCTGTCTCTCGAACAAGCACTGCCCCTTTGGACCGTCTGAAAATCATGATGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab