CircRNA Information

General Information
circRNA Basic Information
CircID chr1:108699474|108699570
Strand +
CircType exon
Host Gene ENSG00000134186.10;
Algorism CIRI2;
Sequence CTCTCCCCTACTTCTCTGTTCCTTGGACCTTTCTCTTGATCGCTCTCTCTCTTTTTCTCGTTCATTTCCTCTTTCCTTATCATAGTCACGATCTCGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:108699474|108699570 hsa-miR-335-5p 0 0 1
chr1:108699474|108699570 hsa-miR-335-3p 0 0 1
chr1:108699474|108699570 hsa-miR-583 1 0 1
chr1:108699474|108699570 hsa-miR-3125 1 1 0
chr1:108699474|108699570 hsa-miR-3132 1 0 0
chr1:108699474|108699570 hsa-miR-3153 1 0 0
chr1:108699474|108699570 hsa-miR-3154 1 0 0
chr1:108699474|108699570 hsa-miR-3164 1 0 0
chr1:108699474|108699570 hsa-miR-3185 1 0 0
chr1:108699474|108699570 hsa-miR-4298 1 0 0
chr1:108699474|108699570 hsa-miR-4311 0 1 0
chr1:108699474|108699570 hsa-miR-4281 1 0 0
chr1:108699474|108699570 hsa-miR-4428 1 1 0
chr1:108699474|108699570 hsa-miR-4476 1 1 0
chr1:108699474|108699570 hsa-miR-4496 1 0 0
chr1:108699474|108699570 hsa-miR-4533 1 0 0
chr1:108699474|108699570 hsa-miR-4644 1 1 0
chr1:108699474|108699570 hsa-miR-4784 1 0 0
chr1:108699474|108699570 hsa-miR-5093 1 1 0
chr1:108699474|108699570 hsa-miR-5739 1 0 0
chr1:108699474|108699570 hsa-miR-6088 1 0 0
chr1:108699474|108699570 hsa-miR-6090 1 0 0
chr1:108699474|108699570 hsa-miR-6124 1 0 0
chr1:108699474|108699570 hsa-miR-6127 1 0 0
chr1:108699474|108699570 hsa-miR-6133 1 0 0
chr1:108699474|108699570 hsa-miR-8052 1 0 0
chr1:108699474|108699570 hsa-miR-8085 1 0 0
chr1:108699474|108699570 hsa-miR-12118 1 0 0
chr1:108699474|108699570 hsa-miR-12120 1 1 0
chr1:108699474|108699570 hsa-miR-211-3p 1 0 0
chr1:108699474|108699570 hsa-miR-134-5p 1 0 0
chr1:108699474|108699570 hsa-miR-1247-3p 1 0 0
chr1:108699474|108699570 hsa-miR-6809-5p 1 0 0
chr1:108699474|108699570 hsa-miR-5187-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6807-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6873-5p 1 0 0
chr1:108699474|108699570 hsa-miR-4695-5p 1 0 0
chr1:108699474|108699570 hsa-miR-4709-3p 1 0 0
chr1:108699474|108699570 hsa-miR-6730-5p 1 1 0
chr1:108699474|108699570 hsa-miR-197-5p 1 0 0
chr1:108699474|108699570 hsa-miR-7845-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6716-5p 1 0 0
chr1:108699474|108699570 hsa-miR-3190-3p 1 0 0
chr1:108699474|108699570 hsa-miR-6760-5p 1 0 0
chr1:108699474|108699570 hsa-miR-3150b-3p 1 0 0
chr1:108699474|108699570 hsa-miR-4640-5p 1 0 0
chr1:108699474|108699570 hsa-miR-3202 1 0 0
chr1:108699474|108699570 hsa-miR-6830-5p 0 1 0
chr1:108699474|108699570 hsa-miR-5584-5p 1 1 0
chr1:108699474|108699570 hsa-miR-6832-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6801-5p 1 0 0
chr1:108699474|108699570 hsa-miR-5197-3p 1 1 0
chr1:108699474|108699570 hsa-miR-6893-5p 1 0 0
chr1:108699474|108699570 hsa-miR-4726-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6831-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6731-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6739-5p 1 1 0
chr1:108699474|108699570 hsa-miR-6758-5p 1 1 0
chr1:108699474|108699570 hsa-miR-6856-5p 1 0 0
chr1:108699474|108699570 hsa-miR-3173-3p 1 0 0
chr1:108699474|108699570 hsa-miR-3679-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6891-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6750-5p 1 0 0
chr1:108699474|108699570 hsa-miR-6859-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:108699474|108699570
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MIRKEEMNEKKRESDQEKGPRNREVGE
Nucleotide Sequence ATGATAAGGAAAGAGGAAATGAACGAGAAAAAGAGAGAGAGCGATCAAGAGAAAGGTCCAAGGAACAGAGAAGTAGGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab