CircRNA Information

General Information
circRNA Basic Information
CircID chr1:109279737|109279916
Strand +
CircType exon
Host Gene ENSG00000134222.15;
Algorism CIRI2;
Sequence CTTCCAGCAGTGAAATGAACAAATAGAAGATGAGAAGTACAGGCAAGTGGTTTGTCTTTATCCACCCCCACTGTTGTGGTCAGCCCCAGAGAATTTTATCTTCTTCCTTGGCATTGGTTCACTGGACATTTCCACGTGAGCGGCCTCCGTAGCTAACCTCCCTGCCCTCTGAGGAGCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:109279737|109279916 hsa-miR-198 0 0 1
chr1:109279737|109279916 hsa-miR-375-5p 0 0 1
chr1:109279737|109279916 hsa-miR-375-3p 0 0 1
chr1:109279737|109279916 hsa-miR-326 0 0 1
chr1:109279737|109279916 hsa-miR-577 0 0 1
chr1:109279737|109279916 hsa-miR-579-5p 0 0 1
chr1:109279737|109279916 hsa-miR-579-3p 0 0 1
chr1:109279737|109279916 hsa-miR-608 1 1 1
chr1:109279737|109279916 hsa-miR-637 0 0 1
chr1:109279737|109279916 hsa-miR-1206 0 0 1
chr1:109279737|109279916 hsa-miR-1287-5p 0 0 1
chr1:109279737|109279916 hsa-miR-1287-3p 0 0 1
chr1:109279737|109279916 hsa-miR-1261 0 0 1
chr1:109279737|109279916 hsa-miR-1321 0 0 1
chr1:109279737|109279916 hsa-miR-1825 0 0 1
chr1:109279737|109279916 hsa-miR-486-5p 0 0 1
chr1:109279737|109279916 hsa-miR-199a-5p 0 0 1
chr1:109279737|109279916 hsa-miR-199b-5p 0 0 1
chr1:109279737|109279916 hsa-miR-1207-5p 1 1 1
chr1:109279737|109279916 hsa-miR-330-5p 0 1 1
chr1:109279737|109279916 hsa-miR-663a 1 0 0
chr1:109279737|109279916 hsa-miR-658 1 0 0
chr1:109279737|109279916 hsa-miR-762 1 0 0
chr1:109279737|109279916 hsa-miR-3132 1 0 0
chr1:109279737|109279916 hsa-miR-3141 1 0 0
chr1:109279737|109279916 hsa-miR-3937 1 0 0
chr1:109279737|109279916 hsa-miR-1268b 1 0 0
chr1:109279737|109279916 hsa-miR-4651 1 1 0
chr1:109279737|109279916 hsa-miR-4656 1 1 0
chr1:109279737|109279916 hsa-miR-4706 1 0 0
chr1:109279737|109279916 hsa-miR-4721 1 0 0
chr1:109279737|109279916 hsa-miR-4739 1 1 0
chr1:109279737|109279916 hsa-miR-4741 1 0 0
chr1:109279737|109279916 hsa-miR-6125 1 0 0
chr1:109279737|109279916 hsa-miR-6745 0 1 0
chr1:109279737|109279916 hsa-miR-8089 1 0 0
chr1:109279737|109279916 hsa-miR-9718 1 0 0
chr1:109279737|109279916 hsa-miR-504-3p 1 0 0
chr1:109279737|109279916 hsa-miR-4433a-3p 1 0 0
chr1:109279737|109279916 hsa-miR-6089 1 0 0
chr1:109279737|109279916 hsa-miR-6807-5p 0 1 0
chr1:109279737|109279916 hsa-miR-6721-5p 1 1 0
chr1:109279737|109279916 hsa-miR-197-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6732-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6805-5p 1 0 0
chr1:109279737|109279916 hsa-miR-23a-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6798-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6760-5p 0 1 0
chr1:109279737|109279916 hsa-miR-5006-5p 0 1 0
chr1:109279737|109279916 hsa-miR-1226-5p 1 0 0
chr1:109279737|109279916 hsa-miR-1229-5p 1 0 0
chr1:109279737|109279916 hsa-miR-4640-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6514-3p 0 1 0
chr1:109279737|109279916 hsa-miR-296-3p 1 0 0
chr1:109279737|109279916 hsa-miR-6847-5p 1 0 0
chr1:109279737|109279916 hsa-miR-4787-5p 1 0 0
chr1:109279737|109279916 hsa-miR-149-3p 1 0 0
chr1:109279737|109279916 hsa-miR-6830-5p 0 1 0
chr1:109279737|109279916 hsa-miR-194-3p 0 1 0
chr1:109279737|109279916 hsa-miR-4800-5p 0 1 0
chr1:109279737|109279916 hsa-miR-6715a-3p 0 1 0
chr1:109279737|109279916 hsa-miR-1255b-2-3p 0 1 0
chr1:109279737|109279916 hsa-miR-1273h-5p 1 0 0
chr1:109279737|109279916 hsa-miR-4763-3p 1 1 0
chr1:109279737|109279916 hsa-miR-6787-5p 1 0 0
chr1:109279737|109279916 hsa-miR-5001-5p 1 1 0
chr1:109279737|109279916 hsa-miR-6743-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6752-5p 0 1 0
chr1:109279737|109279916 hsa-miR-6754-5p 1 1 0
chr1:109279737|109279916 hsa-miR-6756-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6769a-5p 1 1 0
chr1:109279737|109279916 hsa-miR-6803-5p 1 1 0
chr1:109279737|109279916 hsa-miR-6842-5p 1 1 0
chr1:109279737|109279916 hsa-miR-7110-5p 0 1 0
chr1:109279737|109279916 hsa-miR-1249-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6722-3p 1 0 0
chr1:109279737|109279916 hsa-miR-6779-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6797-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6808-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6879-5p 1 1 0
chr1:109279737|109279916 hsa-miR-7111-5p 1 0 0
chr1:109279737|109279916 hsa-miR-4728-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6836-5p 1 0 0
chr1:109279737|109279916 hsa-miR-10396b-5p 1 0 0
chr1:109279737|109279916 hsa-miR-1909-3p 1 0 0
chr1:109279737|109279916 hsa-miR-4632-5p 1 1 0
chr1:109279737|109279916 hsa-miR-4649-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6848-5p 1 0 0
chr1:109279737|109279916 hsa-miR-4436b-3p 0 1 0
chr1:109279737|109279916 hsa-miR-939-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6511a-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6855-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6785-5p 1 0 0
chr1:109279737|109279916 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:109279737|109279916
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MSLSTPTVVVSPREFYLLPWHWFTGHFHVSGLRS
Nucleotide Sequence TTGTCTTTATCCACCCCCACTGTTGTGGTCAGCCCCAGAGAATTTTATCTTCTTCCTTGGCATTGGTTCACTGGACATTTCCACGTGAGCGGCCTCCGTAGCTAA
CircID chr1:109279737|109279916
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MRSTGKWFVFIHPHCCGQPQRILSSSLALVHWTFPRERPP
Nucleotide Sequence ATGAGAAGTACAGGCAAGTGGTTTGTCTTTATCCACCCCCACTGTTGTGGTCAGCCCCAGAGAATTTTATCTTCTTCCTTGGCATTGGTTCACTGGACATTTCCACGTGAGCGGCCTCCGTAG
CircID chr1:109279737|109279916
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MAPQRAGRLATEAAHVEMSSEPMPRKKIKFSGADHNSGGG
Nucleotide Sequence ATGGCTCCTCAGAGGGCAGGGAGGTTAGCTACGGAGGCCGCTCACGTGGAAATGTCCAGTGAACCAATGCCAAGGAAGAAGATAAAATTCTCTGGGGCTGACCACAACAGTGGGGGTGGATAA
CircID chr1:109279737|109279916
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MGLTTTVGVDKDKPLACTSHLLFVHFTAG
Nucleotide Sequence CTGGGGCTGACCACAACAGTGGGGGTGGATAAAGACAAACCACTTGCCTGTACTTCTCATCTTCTATTTGTTCATTTCACTGCTGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab