CircRNA Information

General Information
circRNA Basic Information
CircID chr1:109408196|109408335
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCCAGTCTCATCCCTTACCGTCCCCCACCATCTTATATACATCCCACACCTCAGCAGTCAGACAAAACCTCAAAGTTTCCTTTACCCACAATATTATTTTTACATCTTGAACCCTTTGCACATGTTGTCCCGTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:109408196|109408335 hsa-miR-19a-5p 0 0 1
chr1:109408196|109408335 hsa-miR-19a-3p 0 0 1
chr1:109408196|109408335 hsa-miR-185-5p 0 0 1
chr1:109408196|109408335 hsa-miR-185-3p 0 0 1
chr1:109408196|109408335 hsa-miR-345-5p 0 0 1
chr1:109408196|109408335 hsa-miR-345-3p 0 0 1
chr1:109408196|109408335 hsa-miR-410-5p 0 0 1
chr1:109408196|109408335 hsa-miR-410-3p 0 0 1
chr1:109408196|109408335 hsa-miR-527 0 0 1
chr1:109408196|109408335 hsa-miR-555 0 0 1
chr1:109408196|109408335 hsa-miR-625-5p 0 0 1
chr1:109408196|109408335 hsa-miR-625-3p 0 0 1
chr1:109408196|109408335 hsa-miR-632 1 0 1
chr1:109408196|109408335 hsa-miR-541-5p 0 0 1
chr1:109408196|109408335 hsa-miR-541-3p 0 0 1
chr1:109408196|109408335 hsa-miR-1231 0 0 1
chr1:109408196|109408335 hsa-miR-1304-5p 0 0 1
chr1:109408196|109408335 hsa-miR-1304-3p 0 0 1
chr1:109408196|109408335 hsa-miR-1255a 0 0 1
chr1:109408196|109408335 hsa-miR-1275 1 0 1
chr1:109408196|109408335 hsa-miR-654-5p 0 0 1
chr1:109408196|109408335 hsa-miR-483-5p 1 1 1
chr1:109408196|109408335 hsa-miR-518a-5p 0 0 1
chr1:109408196|109408335 hsa-miR-548c-3p 0 0 1
chr1:109408196|109408335 hsa-miR-1255b 0 0 1
chr1:109408196|109408335 hsa-miR-19b 0 0 1
chr1:109408196|109408335 hsa-miR-1183 1 0 0
chr1:109408196|109408335 hsa-miR-1268a 1 0 0
chr1:109408196|109408335 hsa-miR-3132 1 0 0
chr1:109408196|109408335 hsa-miR-1193 1 0 0
chr1:109408196|109408335 hsa-miR-3196 1 0 0
chr1:109408196|109408335 hsa-miR-4322 1 0 0
chr1:109408196|109408335 hsa-miR-4257 1 0 0
chr1:109408196|109408335 hsa-miR-3911 1 0 0
chr1:109408196|109408335 hsa-miR-1268b 1 0 0
chr1:109408196|109408335 hsa-miR-4466 1 0 0
chr1:109408196|109408335 hsa-miR-4467 1 0 0
chr1:109408196|109408335 hsa-miR-3689c 1 0 0
chr1:109408196|109408335 hsa-miR-4488 1 0 0
chr1:109408196|109408335 hsa-miR-4496 1 0 0
chr1:109408196|109408335 hsa-miR-2392 1 0 0
chr1:109408196|109408335 hsa-miR-4525 1 0 0
chr1:109408196|109408335 hsa-miR-4534 1 0 0
chr1:109408196|109408335 hsa-miR-4647 1 1 0
chr1:109408196|109408335 hsa-miR-4651 1 0 0
chr1:109408196|109408335 hsa-miR-4654 1 0 0
chr1:109408196|109408335 hsa-miR-4710 1 0 0
chr1:109408196|109408335 hsa-miR-5090 1 0 0
chr1:109408196|109408335 hsa-miR-5572 1 0 0
chr1:109408196|109408335 hsa-miR-5787 1 0 0
chr1:109408196|109408335 hsa-miR-6134 1 0 0
chr1:109408196|109408335 hsa-miR-8052 1 0 0
chr1:109408196|109408335 hsa-miR-8077 1 0 0
chr1:109408196|109408335 hsa-miR-9718 1 0 0
chr1:109408196|109408335 hsa-miR-4433b-3p 1 0 0
chr1:109408196|109408335 hsa-miR-6747-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6894-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6728-5p 1 0 0
chr1:109408196|109408335 hsa-miR-3692-5p 1 0 0
chr1:109408196|109408335 hsa-miR-5187-5p 1 1 0
chr1:109408196|109408335 hsa-miR-3934-5p 1 0 0
chr1:109408196|109408335 hsa-miR-7114-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6757-5p 1 1 0
chr1:109408196|109408335 hsa-miR-6880-5p 1 0 0
chr1:109408196|109408335 hsa-miR-7847-3p 1 0 0
chr1:109408196|109408335 hsa-miR-3064-5p 1 1 0
chr1:109408196|109408335 hsa-miR-7160-5p 1 1 0
chr1:109408196|109408335 hsa-miR-6741-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6759-5p 1 1 0
chr1:109408196|109408335 hsa-miR-197-5p 1 0 0
chr1:109408196|109408335 hsa-miR-8069 1 1 0
chr1:109408196|109408335 hsa-miR-6776-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6742-5p 1 0 0
chr1:109408196|109408335 hsa-miR-491-5p 1 0 0
chr1:109408196|109408335 hsa-miR-3151-5p 1 0 0
chr1:109408196|109408335 hsa-miR-1292-5p 1 0 0
chr1:109408196|109408335 hsa-miR-3180-3p 1 0 0
chr1:109408196|109408335 hsa-miR-6748-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6772-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6793-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6796-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6829-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6732-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6805-5p 1 0 0
chr1:109408196|109408335 hsa-miR-23a-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6881-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6782-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6786-5p 1 0 0
chr1:109408196|109408335 hsa-miR-7109-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6853-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6740-5p 1 0 0
chr1:109408196|109408335 hsa-miR-1229-5p 1 0 0
chr1:109408196|109408335 hsa-miR-3691-5p 1 0 0
chr1:109408196|109408335 hsa-miR-296-3p 1 0 0
chr1:109408196|109408335 hsa-miR-92b-5p 1 1 0
chr1:109408196|109408335 hsa-miR-7854-3p 1 0 0
chr1:109408196|109408335 hsa-miR-299-3p 1 0 0
chr1:109408196|109408335 hsa-miR-6892-5p 0 1 0
chr1:109408196|109408335 hsa-miR-5010-5p 1 0 0
chr1:109408196|109408335 hsa-miR-3191-3p 1 1 0
chr1:109408196|109408335 hsa-miR-4804-5p 1 0 0
chr1:109408196|109408335 hsa-miR-329-5p 0 1 0
chr1:109408196|109408335 hsa-miR-1233-5p 1 0 0
chr1:109408196|109408335 hsa-miR-3689b-3p 1 0 0
chr1:109408196|109408335 hsa-miR-4763-3p 1 0 0
chr1:109408196|109408335 hsa-miR-6769b-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6778-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6787-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6812-5p 1 1 0
chr1:109408196|109408335 hsa-miR-6816-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6870-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6775-5p 1 0 0
chr1:109408196|109408335 hsa-miR-1343-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6737-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6752-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6756-5p 1 1 0
chr1:109408196|109408335 hsa-miR-6769a-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6803-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6819-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6851-5p 1 0 0
chr1:109408196|109408335 hsa-miR-7110-5p 1 0 0
chr1:109408196|109408335 hsa-miR-10401-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6722-3p 1 0 0
chr1:109408196|109408335 hsa-miR-6751-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6763-5p 1 0 0
chr1:109408196|109408335 hsa-miR-7111-5p 1 0 0
chr1:109408196|109408335 hsa-miR-4728-5p 1 0 0
chr1:109408196|109408335 hsa-miR-5196-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6780b-5p 1 0 0
chr1:109408196|109408335 hsa-miR-1237-5p 1 0 0
chr1:109408196|109408335 hsa-miR-328-5p 1 1 0
chr1:109408196|109408335 hsa-miR-3689a-3p 1 0 0
chr1:109408196|109408335 hsa-miR-4701-3p 1 0 0
chr1:109408196|109408335 hsa-miR-6794-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6795-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6846-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6848-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6883-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6887-5p 1 0 0
chr1:109408196|109408335 hsa-miR-4723-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6831-5p 1 0 0
chr1:109408196|109408335 hsa-miR-6885-5p 1 0 0
chr1:109408196|109408335 hsa-miR-4769-5p 1 1 0
chr1:109408196|109408335 hsa-miR-6731-5p 1 0 0
chr1:109408196|109408335 hsa-miR-4665-5p 1 1 0
chr1:109408196|109408335 hsa-miR-6736-5p 1 1 0
chr1:109408196|109408335 hsa-miR-6855-5p 1 0 0
chr1:109408196|109408335 hsa-miR-4472 1 1 0
chr1:109408196|109408335 hsa-miR-769-3p 1 0 0
chr1:109408196|109408335 hsa-miR-6506-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:109408196|109408335
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MWVKETLRFCLTAEVWDVYKMVGDGKG
Nucleotide Sequence TTGTGGGTAAAGGAAACTTTGAGGTTTTGTCTGACTGCTGAGGTGTGGGATGTATATAAGATGGTGGGGGACGGTAAGGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab