CircRNA Information

General Information
circRNA Basic Information
CircID chr1:109631279|109631476
Strand -
CircType exon
Host Gene ENSG00000116337.14;
Algorism CIRI2;
Sequence CATGTCACTGTCCCTGGGCCACCCAGTGAAAGCAAAGCCTGGGAATCTGCTCATTGTTGTTTGGGCTCAGGTATTGAGCCTGATGGCCCAGGTATTGAGGGCCTCCCCTGCTGGTGGCCCTGTCCTGGGATCCTCAGAAGCCTGACTGTCCTATGGGCTTCTCCAGTGTCCACAGGGGCTTGGGATGGTTGTGGGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:109631279|109631476 hsa-miR-214-5p 0 0 1
chr1:109631279|109631476 hsa-miR-214-3p 0 0 1
chr1:109631279|109631476 hsa-miR-484 0 1 1
chr1:109631279|109631476 hsa-miR-619-5p 0 0 1
chr1:109631279|109631476 hsa-miR-619-3p 0 0 1
chr1:109631279|109631476 hsa-miR-634 0 0 1
chr1:109631279|109631476 hsa-miR-1226-5p 0 0 1
chr1:109631279|109631476 hsa-miR-1226-3p 0 0 1
chr1:109631279|109631476 hsa-miR-663b 0 0 1
chr1:109631279|109631476 hsa-miR-1293 0 0 1
chr1:109631279|109631476 hsa-miR-1197 0 0 1
chr1:109631279|109631476 hsa-miR-1225-3p 0 0 1
chr1:109631279|109631476 hsa-miR-1233 0 0 1
chr1:109631279|109631476 hsa-miR-1185 0 0 1
chr1:109631279|109631476 hsa-miR-608 0 1 0
chr1:109631279|109631476 hsa-miR-638 1 0 0
chr1:109631279|109631476 hsa-miR-761 0 1 0
chr1:109631279|109631476 hsa-miR-3138 0 1 0
chr1:109631279|109631476 hsa-miR-3911 0 1 0
chr1:109631279|109631476 hsa-miR-3918 0 1 0
chr1:109631279|109631476 hsa-miR-4436a 0 1 0
chr1:109631279|109631476 hsa-miR-4530 0 1 0
chr1:109631279|109631476 hsa-miR-211-3p 0 1 0
chr1:109631279|109631476 hsa-miR-6840-3p 1 0 0
chr1:109631279|109631476 hsa-miR-6510-5p 0 1 0
chr1:109631279|109631476 hsa-miR-7851-3p 0 1 0
chr1:109631279|109631476 hsa-miR-7845-5p 0 1 0
chr1:109631279|109631476 hsa-miR-5008-5p 0 1 0
chr1:109631279|109631476 hsa-miR-939-3p 0 1 0
chr1:109631279|109631476 hsa-miR-6824-5p 1 0 0
chr1:109631279|109631476 hsa-miR-146b-3p 1 1 0
chr1:109631279|109631476 hsa-miR-3619-3p 1 0 0
chr1:109631279|109631476 hsa-miR-4661-3p 0 1 0
chr1:109631279|109631476 hsa-miR-7113-5p 0 1 0
chr1:109631279|109631476 hsa-miR-4529-5p 0 1 0
chr1:109631279|109631476 hsa-miR-7158-5p 0 1 0
chr1:109631279|109631476 hsa-miR-6743-5p 1 0 0
chr1:109631279|109631476 hsa-miR-6875-5p 1 0 0
chr1:109631279|109631476 hsa-miR-1909-3p 0 1 0
chr1:109631279|109631476 hsa-miR-1199-5p 0 1 0
chr1:109631279|109631476 hsa-miR-4700-5p 0 1 0
chr1:109631279|109631476 hsa-miR-3679-5p 1 0 0
chr1:109631279|109631476 hsa-miR-4756-5p 0 1 0
chr1:109631279|109631476 hsa-miR-6764-5p 0 1 0
chr1:109631279|109631476 hsa-miR-10523-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:109631279|109631476
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MGSGIEPDGPGIEGLPCWWPCPGILRSLTVLWASPVSTGAWDGCGG
Nucleotide Sequence TTGGGCTCAGGTATTGAGCCTGATGGCCCAGGTATTGAGGGCCTCCCCTGCTGGTGGCCCTGTCCTGGGATCCTCAGAAGCCTGACTGTCCTATGGGCTTCTCCAGTGTCCACAGGGGCTTGGGATGGTTGTGGGGGG
CircID chr1:109631279|109631476
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MSLSLGHPVKAKPGNLLIVVWAQVLSLMAQVLRASPAGGPVLGSSEA
Nucleotide Sequence ATGTCACTGTCCCTGGGCCACCCAGTGAAAGCAAAGCCTGGGAATCTGCTCATTGTTGTTTGGGCTCAGGTATTGAGCCTGATGGCCCAGGTATTGAGGGCCTCCCCTGCTGGTGGCCCTGTCCTGGGATCCTCAGAAGCCTGA
CircID chr1:109631279|109631476
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MLVALSWDPQKPDCPMGFSSVHRGLGWLWG
Nucleotide Sequence CTGCTGGTGGCCCTGTCCTGGGATCCTCAGAAGCCTGACTGTCCTATGGGCTTCTCCAGTGTCCACAGGGGCTTGGGATGGTTGTGGGGG
CircID chr1:109631279|109631476
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MRIPGQGHQQGRPSIPGPSGSIPEPKQQ
Nucleotide Sequence CTGAGGATCCCAGGACAGGGCCACCAGCAGGGGAGGCCCTCAATACCTGGGCCATCAGGCTCAATACCTGAGCCCAAACAACAATGA
CircID chr1:109631279|109631476
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MGHQAQYLSPNNNEQIPRLCFHWVAQGQ
Nucleotide Sequence CTGGGCCATCAGGCTCAATACCTGAGCCCAAACAACAATGAGCAGATTCCCAGGCTTTGCTTTCACTGGGTGGCCCAGGGACAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab