CircRNA Information

General Information
circRNA Basic Information
CircID chr1:109752342|109752551
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence ATCCCTCTCCTACCTTGGGTGAAAAACAGTGTTCTACCCTCCTAGGCTCCCATTGCTTCTTCTCATGATACTACCCACACATGCTTCTGATTTCCCATACTCAAGTATAAAGTGCTTAGGGCAGAACTCAGATGTAGAAAATTCCACTCCCGGAAATGTCTTCAGAAATCAATGACATTTCAGACCCCTCCTGCCTGCAGAAAGCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:109752342|109752551 hsa-miR-141-5p 0 0 1
chr1:109752342|109752551 hsa-miR-141-3p 0 0 1
chr1:109752342|109752551 hsa-miR-200a-5p 0 0 1
chr1:109752342|109752551 hsa-miR-200a-3p 0 0 1
chr1:109752342|109752551 hsa-miR-452-5p 0 0 1
chr1:109752342|109752551 hsa-miR-452-3p 0 0 1
chr1:109752342|109752551 hsa-miR-496 0 0 1
chr1:109752342|109752551 hsa-miR-616-5p 0 0 1
chr1:109752342|109752551 hsa-miR-616-3p 0 0 1
chr1:109752342|109752551 hsa-miR-641 0 0 1
chr1:109752342|109752551 hsa-miR-920 0 0 1
chr1:109752342|109752551 hsa-miR-940 0 0 1
chr1:109752342|109752551 hsa-miR-1180-5p 0 0 1
chr1:109752342|109752551 hsa-miR-1180-3p 0 0 1
chr1:109752342|109752551 hsa-miR-1205 0 0 1
chr1:109752342|109752551 hsa-miR-1208 0 0 1
chr1:109752342|109752551 hsa-miR-1253 1 1 1
chr1:109752342|109752551 hsa-miR-1184 0 0 1
chr1:109752342|109752551 hsa-miR-324-3p 0 0 1
chr1:109752342|109752551 hsa-miR-644 0 0 1
chr1:109752342|109752551 hsa-miR-1300 0 0 1
chr1:109752342|109752551 hsa-miR-544 0 0 1
chr1:109752342|109752551 hsa-miR-203 0 0 1
chr1:109752342|109752551 hsa-miR-147 0 0 1
chr1:109752342|109752551 hsa-miR-608 1 0 0
chr1:109752342|109752551 hsa-miR-298 1 0 0
chr1:109752342|109752551 hsa-miR-3125 1 0 0
chr1:109752342|109752551 hsa-miR-3132 1 0 0
chr1:109752342|109752551 hsa-miR-3185 0 1 0
chr1:109752342|109752551 hsa-miR-3188 1 0 0
chr1:109752342|109752551 hsa-miR-4271 1 0 0
chr1:109752342|109752551 hsa-miR-3911 1 0 0
chr1:109752342|109752551 hsa-miR-3916 0 1 0
chr1:109752342|109752551 hsa-miR-4489 1 0 0
chr1:109752342|109752551 hsa-miR-4514 1 1 0
chr1:109752342|109752551 hsa-miR-4651 1 0 0
chr1:109752342|109752551 hsa-miR-4673 1 1 0
chr1:109752342|109752551 hsa-miR-4689 1 1 0
chr1:109752342|109752551 hsa-miR-4692 0 1 0
chr1:109752342|109752551 hsa-miR-4706 1 0 0
chr1:109752342|109752551 hsa-miR-4741 1 0 0
chr1:109752342|109752551 hsa-miR-4779 0 1 0
chr1:109752342|109752551 hsa-miR-4784 1 0 0
chr1:109752342|109752551 hsa-miR-5194 1 1 0
chr1:109752342|109752551 hsa-miR-6088 1 0 0
chr1:109752342|109752551 hsa-miR-6090 1 0 0
chr1:109752342|109752551 hsa-miR-4433b-3p 1 0 0
chr1:109752342|109752551 hsa-miR-18a-3p 0 1 0
chr1:109752342|109752551 hsa-miR-6861-5p 1 0 0
chr1:109752342|109752551 hsa-miR-7106-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6728-5p 1 0 0
chr1:109752342|109752551 hsa-miR-7851-3p 1 0 0
chr1:109752342|109752551 hsa-miR-1227-5p 1 0 0
chr1:109752342|109752551 hsa-miR-3192-5p 0 1 0
chr1:109752342|109752551 hsa-miR-6757-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6867-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6746-5p 1 0 0
chr1:109752342|109752551 hsa-miR-4722-5p 0 1 0
chr1:109752342|109752551 hsa-miR-6741-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6759-5p 1 0 0
chr1:109752342|109752551 hsa-miR-197-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6871-5p 1 1 0
chr1:109752342|109752551 hsa-miR-6748-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6793-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6796-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6827-5p 1 1 0
chr1:109752342|109752551 hsa-miR-2467-3p 1 0 0
chr1:109752342|109752551 hsa-miR-6782-5p 1 0 0
chr1:109752342|109752551 hsa-miR-1229-5p 1 1 0
chr1:109752342|109752551 hsa-miR-193b-5p 1 0 0
chr1:109752342|109752551 hsa-miR-4787-5p 1 0 0
chr1:109752342|109752551 hsa-miR-149-3p 1 0 0
chr1:109752342|109752551 hsa-miR-1225-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6814-5p 0 1 0
chr1:109752342|109752551 hsa-miR-6738-3p 0 1 0
chr1:109752342|109752551 hsa-miR-6755-5p 0 1 0
chr1:109752342|109752551 hsa-miR-222-3p 0 1 0
chr1:109752342|109752551 hsa-miR-1233-5p 1 0 0
chr1:109752342|109752551 hsa-miR-4763-3p 1 0 0
chr1:109752342|109752551 hsa-miR-6778-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6893-5p 1 1 0
chr1:109752342|109752551 hsa-miR-6726-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6737-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6752-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6769a-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6819-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6842-5p 1 0 0
chr1:109752342|109752551 hsa-miR-10401-5p 1 1 0
chr1:109752342|109752551 hsa-miR-1249-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6763-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6779-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6780a-5p 1 1 0
chr1:109752342|109752551 hsa-miR-6808-5p 0 1 0
chr1:109752342|109752551 hsa-miR-7111-5p 1 0 0
chr1:109752342|109752551 hsa-miR-4728-5p 1 0 0
chr1:109752342|109752551 hsa-miR-1237-5p 1 0 0
chr1:109752342|109752551 hsa-miR-328-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6858-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6883-5p 1 1 0
chr1:109752342|109752551 hsa-miR-4723-5p 1 0 0
chr1:109752342|109752551 hsa-miR-4758-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6511b-5p 1 1 0
chr1:109752342|109752551 hsa-miR-6731-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6856-5p 1 0 0
chr1:109752342|109752551 hsa-miR-1914-3p 1 0 0
chr1:109752342|109752551 hsa-miR-6855-5p 1 0 0
chr1:109752342|109752551 hsa-miR-4646-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6891-5p 1 0 0
chr1:109752342|109752551 hsa-miR-6529-5p 1 0 0
chr1:109752342|109752551 hsa-miR-125a-5p 0 1 0
chr1:109752342|109752551 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:109752342|109752551
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MLLLMILPTHASDFPYSSIKCLGQNSDVENSTPGNVFRNQ
Nucleotide Sequence TTGCTTCTTCTCATGATACTACCCACACATGCTTCTGATTTCCCATACTCAAGTATAAAGTGCTTAGGGCAGAACTCAGATGTAGAAAATTCCACTCCCGGAAATGTCTTCAGAAATCAATGA
CircID chr1:109752342|109752551
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MKTFPGVEFSTSEFCPKHFILEYGKSEACVGSIMRRSNGSLGG
Nucleotide Sequence CTGAAGACATTTCCGGGAGTGGAATTTTCTACATCTGAGTTCTGCCCTAAGCACTTTATACTTGAGTATGGGAAATCAGAAGCATGTGTGGGTAGTATCATGAGAAGAAGCAATGGGAGCCTAGGAGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab