CircRNA Information

General Information
circRNA Basic Information
CircID chr1:109761529|109763892
Strand +
CircType exon
Host Gene ENSG00000198758.9;
Algorism CIRI2;
Sequence CAGCACCGGACCACCTGCTCCAAGACCAGCCTCCTGGGGGGACCAGGCACCCGGCCTTCACTGGCACCCAGTGCACCGGAAGGAGTACTCCCAGAACCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:109761529|109763892 hsa-miR-432-5p 0 0 1
chr1:109761529|109763892 hsa-miR-432-3p 0 0 1
chr1:109761529|109763892 hsa-miR-661 0 0 1
chr1:109761529|109763892 hsa-miR-665 0 1 1
chr1:109761529|109763892 hsa-miR-1294 0 0 1
chr1:109761529|109763892 hsa-miR-1250-5p 0 0 1
chr1:109761529|109763892 hsa-miR-1250-3p 0 0 1
chr1:109761529|109763892 hsa-miR-485-5p 0 1 1
chr1:109761529|109763892 hsa-miR-361-3p 0 1 1
chr1:109761529|109763892 hsa-miR-323-5p 0 0 1
chr1:109761529|109763892 hsa-miR-550 0 0 1
chr1:109761529|109763892 hsa-miR-1254 0 0 1
chr1:109761529|109763892 hsa-miR-608 1 0 0
chr1:109761529|109763892 hsa-miR-637 1 0 0
chr1:109761529|109763892 hsa-miR-762 1 0 0
chr1:109761529|109763892 hsa-miR-1293 1 0 0
chr1:109761529|109763892 hsa-miR-378b 1 0 0
chr1:109761529|109763892 hsa-miR-378c 1 0 0
chr1:109761529|109763892 hsa-miR-378e 1 0 0
chr1:109761529|109763892 hsa-miR-378f 1 0 0
chr1:109761529|109763892 hsa-miR-378g 1 0 0
chr1:109761529|109763892 hsa-miR-4430 1 0 0
chr1:109761529|109763892 hsa-miR-4498 1 0 0
chr1:109761529|109763892 hsa-miR-4505 1 0 0
chr1:109761529|109763892 hsa-miR-5787 1 0 0
chr1:109761529|109763892 hsa-miR-6085 1 0 0
chr1:109761529|109763892 hsa-miR-6086 1 0 0
chr1:109761529|109763892 hsa-miR-6126 0 1 0
chr1:109761529|109763892 hsa-miR-138-5p 1 0 0
chr1:109761529|109763892 hsa-miR-29b-1-5p 1 0 0
chr1:109761529|109763892 hsa-miR-4747-3p 1 0 0
chr1:109761529|109763892 hsa-miR-152-5p 0 1 0
chr1:109761529|109763892 hsa-miR-323a-5p 0 1 0
chr1:109761529|109763892 hsa-miR-6861-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6894-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6089 1 0 0
chr1:109761529|109763892 hsa-miR-4695-5p 1 1 0
chr1:109761529|109763892 hsa-miR-6741-5p 1 1 0
chr1:109761529|109763892 hsa-miR-6727-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6842-3p 1 0 0
chr1:109761529|109763892 hsa-miR-6776-5p 1 1 0
chr1:109761529|109763892 hsa-miR-3663-5p 1 1 0
chr1:109761529|109763892 hsa-miR-4697-3p 1 0 0
chr1:109761529|109763892 hsa-miR-6805-5p 1 1 0
chr1:109761529|109763892 hsa-miR-6827-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6798-5p 1 0 0
chr1:109761529|109763892 hsa-miR-7152-3p 1 1 0
chr1:109761529|109763892 hsa-miR-4664-3p 0 1 0
chr1:109761529|109763892 hsa-miR-5001-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6726-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6743-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6754-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6803-5p 1 0 0
chr1:109761529|109763892 hsa-miR-3620-5p 1 0 0
chr1:109761529|109763892 hsa-miR-6846-5p 1 1 0
chr1:109761529|109763892 hsa-miR-6848-5p 1 0 0
chr1:109761529|109763892 hsa-miR-3085-5p 1 1 0
chr1:109761529|109763892 hsa-miR-1271-3p 0 1 0
chr1:109761529|109763892 hsa-miR-378a-3p 1 0 0
chr1:109761529|109763892 hsa-miR-6791-5p 1 0 0
chr1:109761529|109763892 hsa-miR-378d 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:109761529|109763892
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLQDQPPGGTRHPAFTGTQCTGRSTPRTS
Nucleotide Sequence CTGCTCCAAGACCAGCCTCCTGGGGGGACCAGGCACCCGGCCTTCACTGGCACCCAGTGCACCGGAAGGAGTACTCCCAGAACCTCA
CircID chr1:109761529|109763892
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MGVLLPVHWVPVKAGCLVPPGGWSWSRWSGA
Nucleotide Sequence CTGGGAGTACTCCTTCCGGTGCACTGGGTGCCAGTGAAGGCCGGGTGCCTGGTCCCCCCAGGAGGCTGGTCTTGGAGCAGGTGGTCCGGTGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab