CircRNA Information

General Information
circRNA Basic Information
CircID chr1:11055064|11056071
Strand -
CircType exon
Host Gene ENSG00000116649.8;
Algorism CIRI2;
Sequence CGGCTCCTGGAAGTTCGTGCTCGGGTTCTTGCTGCACAGCATGAAGCCGATCTGGCCGCTGGGGTAGGTGGGGATGGTGCAGTAGGCATAGGCCACCACGGGGAACAGGGACTGGCAGAACTGCCGCATCTCCTTGATGAGGTCCAGGTGCAGCCACTGGCACTCGCCTGGGGGCCCCTAAGCATCAGCATCCGGCAGGGCCTGCCCTGCCCCACCCCGCCCCGCCCCAGTGCTCCAGGCCTGTGGCTCACCCTGGCAGCAGAGGACACCATCTTCCTTGAGGGCTGTCTTCATGAGCTGGTAATAGGACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:11055064|11056071 hsa-miR-107 0 0 1
chr1:11055064|11056071 hsa-miR-217-5p 0 0 1
chr1:11055064|11056071 hsa-miR-217-3p 0 0 1
chr1:11055064|11056071 hsa-miR-492 0 0 1
chr1:11055064|11056071 hsa-miR-604 0 0 1
chr1:11055064|11056071 hsa-miR-608 1 1 1
chr1:11055064|11056071 hsa-miR-619-5p 0 0 1
chr1:11055064|11056071 hsa-miR-619-3p 0 0 1
chr1:11055064|11056071 hsa-miR-634 0 0 1
chr1:11055064|11056071 hsa-miR-647 0 1 1
chr1:11055064|11056071 hsa-miR-744-5p 0 0 1
chr1:11055064|11056071 hsa-miR-744-3p 0 0 1
chr1:11055064|11056071 hsa-miR-665 0 0 1
chr1:11055064|11056071 hsa-miR-1291 0 1 1
chr1:11055064|11056071 hsa-miR-296-5p 0 0 1
chr1:11055064|11056071 hsa-miR-486-3p 0 0 1
chr1:11055064|11056071 hsa-miR-767-5p 0 0 1
chr1:11055064|11056071 hsa-miR-339-5p 0 0 1
chr1:11055064|11056071 hsa-miR-361-3p 0 1 1
chr1:11055064|11056071 hsa-miR-1224-3p 0 0 1
chr1:11055064|11056071 hsa-miR-532-5p 0 0 1
chr1:11055064|11056071 hsa-miR-1207-5p 0 1 1
chr1:11055064|11056071 hsa-miR-509-3-5p 0 0 1
chr1:11055064|11056071 hsa-miR-509-5p 0 0 1
chr1:11055064|11056071 hsa-miR-548b-3p 0 1 1
chr1:11055064|11056071 hsa-miR-556-3p 0 0 1
chr1:11055064|11056071 hsa-miR-1274a 0 0 1
chr1:11055064|11056071 hsa-miR-103 0 0 1
chr1:11055064|11056071 hsa-miR-1274b 0 0 1
chr1:11055064|11056071 hsa-miR-1254 0 0 1
chr1:11055064|11056071 hsa-miR-663 0 0 1
chr1:11055064|11056071 hsa-miR-637 1 0 0
chr1:11055064|11056071 hsa-miR-663a 0 1 0
chr1:11055064|11056071 hsa-miR-762 1 0 0
chr1:11055064|11056071 hsa-miR-2861 1 0 0
chr1:11055064|11056071 hsa-miR-3196 0 1 0
chr1:11055064|11056071 hsa-miR-3197 1 0 0
chr1:11055064|11056071 hsa-miR-4254 0 1 0
chr1:11055064|11056071 hsa-miR-4277 0 1 0
chr1:11055064|11056071 hsa-miR-3943 1 0 0
chr1:11055064|11056071 hsa-miR-4537 1 0 0
chr1:11055064|11056071 hsa-miR-4647 0 1 0
chr1:11055064|11056071 hsa-miR-4651 1 1 0
chr1:11055064|11056071 hsa-miR-4706 1 0 0
chr1:11055064|11056071 hsa-miR-5693 0 1 0
chr1:11055064|11056071 hsa-miR-5787 1 0 0
chr1:11055064|11056071 hsa-miR-6068 1 0 0
chr1:11055064|11056071 hsa-miR-6071 0 1 0
chr1:11055064|11056071 hsa-miR-6081 1 0 0
chr1:11055064|11056071 hsa-miR-6084 1 0 0
chr1:11055064|11056071 hsa-miR-8060 0 1 0
chr1:11055064|11056071 hsa-miR-8072 1 0 0
chr1:11055064|11056071 hsa-miR-8089 1 0 0
chr1:11055064|11056071 hsa-miR-9500 0 1 0
chr1:11055064|11056071 hsa-miR-6749-3p 1 0 0
chr1:11055064|11056071 hsa-miR-6894-5p 1 0 0
chr1:11055064|11056071 hsa-miR-3663-3p 1 0 0
chr1:11055064|11056071 hsa-miR-6807-5p 0 1 0
chr1:11055064|11056071 hsa-miR-3677-5p 0 1 0
chr1:11055064|11056071 hsa-miR-1301-3p 1 0 0
chr1:11055064|11056071 hsa-miR-6727-5p 1 0 0
chr1:11055064|11056071 hsa-miR-191-3p 0 1 0
chr1:11055064|11056071 hsa-miR-3189-5p 1 0 0
chr1:11055064|11056071 hsa-miR-4728-3p 1 0 0
chr1:11055064|11056071 hsa-miR-6760-5p 0 1 0
chr1:11055064|11056071 hsa-miR-3130-3p 0 1 0
chr1:11055064|11056071 hsa-miR-6782-5p 1 0 0
chr1:11055064|11056071 hsa-miR-6888-5p 0 1 0
chr1:11055064|11056071 hsa-miR-6735-3p 1 0 0
chr1:11055064|11056071 hsa-miR-615-5p 1 0 0
chr1:11055064|11056071 hsa-miR-6786-5p 1 0 0
chr1:11055064|11056071 hsa-miR-939-3p 1 0 0
chr1:11055064|11056071 hsa-miR-6763-3p 1 0 0
chr1:11055064|11056071 hsa-miR-1909-5p 1 1 0
chr1:11055064|11056071 hsa-miR-4640-5p 1 0 0
chr1:11055064|11056071 hsa-miR-1908-5p 0 1 0
chr1:11055064|11056071 hsa-miR-6749-5p 1 1 0
chr1:11055064|11056071 hsa-miR-6501-5p 1 0 0
chr1:11055064|11056071 hsa-miR-3690 0 1 0
chr1:11055064|11056071 hsa-miR-6830-5p 0 1 0
chr1:11055064|11056071 hsa-miR-937-5p 1 0 0
chr1:11055064|11056071 hsa-miR-6789-5p 1 1 0
chr1:11055064|11056071 hsa-miR-7112-5p 1 0 0
chr1:11055064|11056071 hsa-miR-1237-3p 1 0 0
chr1:11055064|11056071 hsa-miR-2114-5p 0 1 0
chr1:11055064|11056071 hsa-miR-6804-3p 0 1 0
chr1:11055064|11056071 hsa-miR-3944-5p 1 1 0
chr1:11055064|11056071 hsa-miR-24-2-5p 0 1 0
chr1:11055064|11056071 hsa-miR-24-1-5p 0 1 0
chr1:11055064|11056071 hsa-miR-6738-3p 0 1 0
chr1:11055064|11056071 hsa-miR-92a-3p 0 1 0
chr1:11055064|11056071 hsa-miR-654-3p 0 1 0
chr1:11055064|11056071 hsa-miR-6729-3p 0 1 0
chr1:11055064|11056071 hsa-miR-6847-3p 0 1 0
chr1:11055064|11056071 hsa-miR-4727-5p 0 1 0
chr1:11055064|11056071 hsa-miR-500a-3p 0 1 0
chr1:11055064|11056071 hsa-miR-4763-3p 1 1 0
chr1:11055064|11056071 hsa-miR-6787-5p 0 1 0
chr1:11055064|11056071 hsa-miR-6812-5p 1 1 0
chr1:11055064|11056071 hsa-miR-6816-5p 1 1 0
chr1:11055064|11056071 hsa-miR-6775-5p 1 0 0
chr1:11055064|11056071 hsa-miR-6743-5p 1 0 0
chr1:11055064|11056071 hsa-miR-6756-5p 1 1 0
chr1:11055064|11056071 hsa-miR-7107-5p 1 0 0
chr1:11055064|11056071 hsa-miR-6879-5p 0 1 0
chr1:11055064|11056071 hsa-miR-6852-3p 0 1 0
chr1:11055064|11056071 hsa-miR-6836-5p 0 1 0
chr1:11055064|11056071 hsa-miR-10396b-5p 0 1 0
chr1:11055064|11056071 hsa-miR-328-5p 1 0 0
chr1:11055064|11056071 hsa-miR-4685-5p 1 0 0
chr1:11055064|11056071 hsa-miR-4726-5p 1 0 0
chr1:11055064|11056071 hsa-miR-6729-5p 1 0 0
chr1:11055064|11056071 hsa-miR-3198 1 0 0
chr1:11055064|11056071 hsa-miR-6799-3p 0 1 0
chr1:11055064|11056071 hsa-miR-7843-5p 0 1 0
chr1:11055064|11056071 hsa-miR-3116 0 1 0
chr1:11055064|11056071 hsa-miR-6766-5p 0 1 0
chr1:11055064|11056071 hsa-miR-6791-5p 1 0 0
chr1:11055064|11056071 hsa-miR-4722-3p 1 0 0
chr1:11055064|11056071 hsa-miR-6893-3p 1 0 0
chr1:11055064|11056071 hsa-miR-10400-3p 1 0 0
chr1:11055064|11056071 hsa-miR-6775-3p 0 1 0
chr1:11055064|11056071 hsa-miR-6807-3p 1 0 0
chr1:11055064|11056071 hsa-miR-513c-5p 0 1 0
chr1:11055064|11056071 hsa-miR-92b-3p 1 1 0
chr1:11055064|11056071 hsa-miR-6874-3p 0 1 0
chr1:11055064|11056071 hsa-miR-363-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:11055064|11056071
ORF Type ORF1
Protein Length 102
Nucleotide Length 306
Protein Sequence MEVRARVLAAQHEADLAAGVGGDGAVGIGHHGEQGLAELPHLLDEVQVQPLALAWGPLSISIRQGLPCPTPPRPSAPGLWLTLAAEDTIFLEGCLHELVIGL
Nucleotide Sequence CTGGAAGTTCGTGCTCGGGTTCTTGCTGCACAGCATGAAGCCGATCTGGCCGCTGGGGTAGGTGGGGATGGTGCAGTAGGCATAGGCCACCACGGGGAACAGGGACTGGCAGAACTGCCGCATCTCCTTGATGAGGTCCAGGTGCAGCCACTGGCACTCGCCTGGGGGCCCCTAAGCATCAGCATCCGGCAGGGCCTGCCCTGCCCCACCCCGCCCCGCCCCAGTGCTCCAGGCCTGTGGCTCACCCTGGCAGCAGAGGACACCATCTTCCTTGAGGGCTGTCTTCATGAGCTGGTAATAGGACTC
CircID chr1:11055064|11056071
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MGAPKHQHPAGPALPHPAPPQCSRPVAHPGSRGHHLP
Nucleotide Sequence CTGGGGGCCCCTAAGCATCAGCATCCGGCAGGGCCTGCCCTGCCCCACCCCGCCCCGCCCCAGTGCTCCAGGCCTGTGGCTCACCCTGGCAGCAGAGGACACCATCTTCCTTGA
CircID chr1:11055064|11056071
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MKTALKEDGVLCCQGEPQAWSTGAGRGGAGQALPDADA
Nucleotide Sequence ATGAAGACAGCCCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGTGAGCCACAGGCCTGGAGCACTGGGGCGGGGCGGGGTGGGGCAGGGCAGGCCCTGCCGGATGCTGATGCTTAG
CircID chr1:11055064|11056071
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence MHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEP
Nucleotide Sequence CTGCACCTGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTATGCCTACTGCACCATCCCCACCTACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACGAACTTCCAGGAGCCG
CircID chr1:11055064|11056071
ORF Type ORF5
Protein Length 90
Nucleotide Length 270
Protein Sequence MVSSAARVSHRPGALGRGGVGQGRPCRMLMLRGPQASASGCTWTSSRRCGSSASPCSPWWPMPTAPSPPTPAARSASCCAARTRARTSRS
Nucleotide Sequence ATGGTGTCCTCTGCTGCCAGGGTGAGCCACAGGCCTGGAGCACTGGGGCGGGGCGGGGTGGGGCAGGGCAGGCCCTGCCGGATGCTGATGCTTAGGGGCCCCCAGGCGAGTGCCAGTGGCTGCACCTGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTATGCCTACTGCACCATCCCCACCTACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACGAACTTCCAGGAGC
CircID chr1:11055064|11056071
ORF Type ORF6
Protein Length 39
Nucleotide Length 117
Protein Sequence MPVPVPRGGLCLLHHPHLPQRPDRLHAVQQEPEHELPGA
Nucleotide Sequence CTGCCAGTCCCTGTTCCCCGTGGTGGCCTATGCCTACTGCACCATCCCCACCTACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACGAACTTCCAGGAGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab