CircRNA Information

General Information
circRNA Basic Information
CircID chr1:111352218|111352451
Strand +
CircType exon
Host Gene ENSG00000173947.12;
Algorism CIRI2;
Sequence CAGGAGGCTTCACCTCTTGCTAGCCCTTTCCCCAGGTAACACTCATCAGGGGGTGGCCATGAGGGTTACAGTAGGCTCTCTTGCAGCCACTGGCAGCTTCTCAATCTTTGGTGTCCAGACACATGCAGGCTTATCACCTTTCTGGTAATTACGAAGAAGCCTAAGTGGGTACAAAAGGACCCTTTTATTAAAAGATTAAATCACATTTAGTGCCAATCCTGAACAAACTATATA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:111352218|111352451 hsa-miR-22-5p 0 0 1
chr1:111352218|111352451 hsa-miR-22-3p 0 0 1
chr1:111352218|111352451 hsa-miR-96-5p 0 0 1
chr1:111352218|111352451 hsa-miR-96-3p 0 0 1
chr1:111352218|111352451 hsa-miR-375-5p 0 0 1
chr1:111352218|111352451 hsa-miR-375-3p 0 0 1
chr1:111352218|111352451 hsa-miR-422a 0 0 1
chr1:111352218|111352451 hsa-miR-580-5p 0 0 1
chr1:111352218|111352451 hsa-miR-580-3p 0 0 1
chr1:111352218|111352451 hsa-miR-588 0 0 1
chr1:111352218|111352451 hsa-miR-596 0 0 1
chr1:111352218|111352451 hsa-miR-604 0 0 1
chr1:111352218|111352451 hsa-miR-619-5p 0 0 1
chr1:111352218|111352451 hsa-miR-619-3p 0 0 1
chr1:111352218|111352451 hsa-miR-621 0 1 1
chr1:111352218|111352451 hsa-miR-647 0 0 1
chr1:111352218|111352451 hsa-miR-1271-5p 0 0 1
chr1:111352218|111352451 hsa-miR-1271-3p 0 0 1
chr1:111352218|111352451 hsa-miR-1183 0 0 1
chr1:111352218|111352451 hsa-miR-1231 1 0 1
chr1:111352218|111352451 hsa-miR-1253 0 0 1
chr1:111352218|111352451 hsa-miR-574-5p 0 0 1
chr1:111352218|111352451 hsa-miR-378 0 0 1
chr1:111352218|111352451 hsa-miR-1300 0 0 1
chr1:111352218|111352451 hsa-miR-2110 0 1 0
chr1:111352218|111352451 hsa-miR-3153 0 1 0
chr1:111352218|111352451 hsa-miR-378c 1 0 0
chr1:111352218|111352451 hsa-miR-3659 1 1 0
chr1:111352218|111352451 hsa-miR-4658 1 1 0
chr1:111352218|111352451 hsa-miR-6165 0 1 0
chr1:111352218|111352451 hsa-miR-6860 1 0 0
chr1:111352218|111352451 hsa-miR-8089 1 1 0
chr1:111352218|111352451 hsa-miR-10226 1 1 0
chr1:111352218|111352451 hsa-miR-12128 1 0 0
chr1:111352218|111352451 hsa-miR-125a-3p 1 0 0
chr1:111352218|111352451 hsa-miR-6730-5p 0 1 0
chr1:111352218|111352451 hsa-miR-6798-5p 1 0 0
chr1:111352218|111352451 hsa-miR-6823-5p 1 0 0
chr1:111352218|111352451 hsa-miR-6501-5p 1 1 0
chr1:111352218|111352451 hsa-miR-4638-3p 1 1 0
chr1:111352218|111352451 hsa-miR-24-1-5p 0 1 0
chr1:111352218|111352451 hsa-miR-628-3p 0 1 0
chr1:111352218|111352451 hsa-miR-4693-5p 0 1 0
chr1:111352218|111352451 hsa-miR-6780b-5p 0 1 0
chr1:111352218|111352451 hsa-miR-3187-5p 1 0 0
chr1:111352218|111352451 hsa-miR-4758-5p 1 0 0
chr1:111352218|111352451 hsa-miR-1285-3p 0 1 0
chr1:111352218|111352451 hsa-miR-4700-5p 0 1 0
chr1:111352218|111352451 hsa-miR-6790-5p 1 1 0
chr1:111352218|111352451 hsa-miR-6791-5p 1 0 0
chr1:111352218|111352451 hsa-miR-3085-3p 1 0 0
chr1:111352218|111352451 hsa-miR-9902 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr1:111352218|111352451
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MLALSPGNTHQGVAMRVTVGSLAATGSFSIFGVQTHAGLSPFW
Nucleotide Sequence TTGCTAGCCCTTTCCCCAGGTAACACTCATCAGGGGGTGGCCATGAGGGTTACAGTAGGCTCTCTTGCAGCCACTGGCAGCTTCTCAATCTTTGGTGTCCAGACACATGCAGGCTTATCACCTTTCTGGTAA

CircID chr1:111352218|111352451
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MQPLAASQSLVSRHMQAYHLSGNYEEA
Nucleotide Sequence TTGCAGCCACTGGCAGCTTCTCAATCTTTGGTGTCCAGACACATGCAGGCTTATCACCTTTCTGGTAATTACGAAGAAGCCTAA

CircID chr1:111352218|111352451
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MYPLRLLRNYQKGDKPACVWTPKIEKLPVAAREPTVTLMATP
Nucleotide Sequence TTGTACCCACTTAGGCTTCTTCGTAATTACCAGAAAGGTGATAAGCCTGCATGTGTCTGGACACCAAAGATTGAGAAGCTGCCAGTGGCTGCAAGAGAGCCTACTGTAACCCTCATGGCCACCCCCTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites