CircRNA Information

General Information
circRNA Basic Information
CircID chr1:111725413|111725631
Strand +
CircType exon
Host Gene ENSG00000197852.9;
Algorism CIRI2;
Sequence CCAGAAGAAATAGCCACTTGATTTTAAAATTCCCAGCTCCATTCCGTGGCCTTCTCCCCACTAGACACAGCAGTCCCAGGCCTCCTGTTCCCTCCTCACCTAGAGGCAGCCGGGACGGAGGGGGAAGGGCCAGGCAGCAGCTCAGCTCCGGCTTCTCTAAAGCCACTCTGGGCACGTGGCCCAGGAGGGCCACCTAGTGATCCAGGCCCCCCCCCAGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:111725413|111725631 hsa-miR-328-5p 0 0 1
chr1:111725413|111725631 hsa-miR-328-3p 0 0 1
chr1:111725413|111725631 hsa-miR-558 0 1 1
chr1:111725413|111725631 hsa-miR-637 1 0 1
chr1:111725413|111725631 hsa-miR-661 0 1 1
chr1:111725413|111725631 hsa-miR-939-5p 0 0 1
chr1:111725413|111725631 hsa-miR-939-3p 0 0 1
chr1:111725413|111725631 hsa-miR-1203 0 1 1
chr1:111725413|111725631 hsa-miR-663b 0 1 1
chr1:111725413|111725631 hsa-miR-1291 0 0 1
chr1:111725413|111725631 hsa-miR-1303 0 1 1
chr1:111725413|111725631 hsa-miR-1288-5p 0 0 1
chr1:111725413|111725631 hsa-miR-1288-3p 0 0 1
chr1:111725413|111725631 hsa-miR-491-5p 0 0 1
chr1:111725413|111725631 hsa-miR-34c-3p 0 0 1
chr1:111725413|111725631 hsa-miR-590-3p 0 0 1
chr1:111725413|111725631 hsa-miR-1254 0 0 1
chr1:111725413|111725631 hsa-miR-601 1 0 0
chr1:111725413|111725631 hsa-miR-638 1 0 0
chr1:111725413|111725631 hsa-miR-762 1 0 0
chr1:111725413|111725631 hsa-miR-760 1 0 0
chr1:111725413|111725631 hsa-miR-920 1 0 0
chr1:111725413|111725631 hsa-miR-1268a 1 0 0
chr1:111725413|111725631 hsa-miR-1470 0 1 0
chr1:111725413|111725631 hsa-miR-1538 1 0 0
chr1:111725413|111725631 hsa-miR-2110 1 0 0
chr1:111725413|111725631 hsa-miR-2861 0 1 0
chr1:111725413|111725631 hsa-miR-3139 0 1 0
chr1:111725413|111725631 hsa-miR-4298 1 0 0
chr1:111725413|111725631 hsa-miR-4300 1 0 0
chr1:111725413|111725631 hsa-miR-1268b 1 0 0
chr1:111725413|111725631 hsa-miR-4450 1 0 0
chr1:111725413|111725631 hsa-miR-3135b 1 0 0
chr1:111725413|111725631 hsa-miR-4462 1 0 0
chr1:111725413|111725631 hsa-miR-4498 1 0 0
chr1:111725413|111725631 hsa-miR-4508 1 0 0
chr1:111725413|111725631 hsa-miR-1587 1 0 0
chr1:111725413|111725631 hsa-miR-4651 1 0 0
chr1:111725413|111725631 hsa-miR-4706 1 0 0
chr1:111725413|111725631 hsa-miR-4739 1 0 0
chr1:111725413|111725631 hsa-miR-6085 1 0 0
chr1:111725413|111725631 hsa-miR-8052 1 0 0
chr1:111725413|111725631 hsa-miR-8053 1 0 0
chr1:111725413|111725631 hsa-miR-8082 1 1 0
chr1:111725413|111725631 hsa-miR-8089 1 0 0
chr1:111725413|111725631 hsa-miR-12115 1 1 0
chr1:111725413|111725631 hsa-miR-4433b-3p 1 0 0
chr1:111725413|111725631 hsa-miR-7155-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6765-5p 1 0 0
chr1:111725413|111725631 hsa-miR-671-5p 1 0 0
chr1:111725413|111725631 hsa-miR-3150a-3p 1 1 0
chr1:111725413|111725631 hsa-miR-7106-5p 1 0 0
chr1:111725413|111725631 hsa-miR-219a-1-3p 1 0 0
chr1:111725413|111725631 hsa-miR-6089 1 0 0
chr1:111725413|111725631 hsa-miR-3192-5p 1 0 0
chr1:111725413|111725631 hsa-miR-4695-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6746-5p 1 0 0
chr1:111725413|111725631 hsa-miR-4474-3p 1 0 0
chr1:111725413|111725631 hsa-miR-6716-5p 1 0 0
chr1:111725413|111725631 hsa-miR-1292-5p 1 0 0
chr1:111725413|111725631 hsa-miR-185-3p 1 0 0
chr1:111725413|111725631 hsa-miR-6829-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6798-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6760-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6514-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6874-5p 1 1 0
chr1:111725413|111725631 hsa-miR-6882-3p 0 1 0
chr1:111725413|111725631 hsa-miR-4640-5p 1 0 0
chr1:111725413|111725631 hsa-miR-30c-2-3p 1 0 0
chr1:111725413|111725631 hsa-miR-1228-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6749-5p 1 0 0
chr1:111725413|111725631 hsa-miR-149-3p 1 0 0
chr1:111725413|111725631 hsa-miR-6802-5p 0 1 0
chr1:111725413|111725631 hsa-miR-6878-5p 0 1 0
chr1:111725413|111725631 hsa-miR-1236-3p 0 1 0
chr1:111725413|111725631 hsa-miR-660-3p 0 1 0
chr1:111725413|111725631 hsa-miR-6886-3p 0 1 0
chr1:111725413|111725631 hsa-miR-6851-3p 0 1 0
chr1:111725413|111725631 hsa-miR-1249-3p 0 1 0
chr1:111725413|111725631 hsa-miR-10400-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6812-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6816-5p 1 0 0
chr1:111725413|111725631 hsa-miR-1343-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6726-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6756-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6803-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6813-5p 1 0 0
chr1:111725413|111725631 hsa-miR-7107-5p 1 0 0
chr1:111725413|111725631 hsa-miR-1249-5p 1 1 0
chr1:111725413|111725631 hsa-miR-6751-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6763-5p 1 0 0
chr1:111725413|111725631 hsa-miR-3620-5p 1 0 0
chr1:111725413|111725631 hsa-miR-5196-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6780b-5p 0 1 0
chr1:111725413|111725631 hsa-miR-4726-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6729-5p 1 0 0
chr1:111725413|111725631 hsa-miR-675-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6795-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6846-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6848-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6858-5p 1 1 0
chr1:111725413|111725631 hsa-miR-6887-5p 1 0 0
chr1:111725413|111725631 hsa-miR-3199 1 0 0
chr1:111725413|111725631 hsa-miR-3116 0 1 0
chr1:111725413|111725631 hsa-miR-3173-3p 0 1 0
chr1:111725413|111725631 hsa-miR-4716-3p 1 0 0
chr1:111725413|111725631 hsa-miR-6750-5p 1 0 0
chr1:111725413|111725631 hsa-miR-6876-3p 0 1 0
chr1:111725413|111725631 hsa-miR-3059-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:111725413|111725631
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MFPPHLEAAGTEGEGPGSSSAPASLKPLWARGPGGPPSDPGPPPG
Nucleotide Sequence CTGTTCCCTCCTCACCTAGAGGCAGCCGGGACGGAGGGGGAAGGGCCAGGCAGCAGCTCAGCTCCGGCTTCTCTAAAGCCACTCTGGGCACGTGGCCCAGGAGGGCCACCTAGTGATCCAGGCCCCCCCCCAGGA
CircID chr1:111725413|111725631
ORF Type ORF2
Protein Length 59
Nucleotide Length 180
Protein Sequence MILKFPAPFRGLLPTRHSSPRPPVPSSPRGSRDGGGRARQQLSSGFSKATLGTWPRRAT
Nucleotide Sequence TTGATTTTAAAATTCCCAGCTCCATTCCGTGGCCTTCTCCCCACTAGACACAGCAGTCCCAGGCCTCCTGTTCCCTCCTCACCTAGAGGCAGCCGGGACGGAGGGGGAAGGGCCAGGCAGCAGCTCAGCTCCGGCTTCTCTAAAGCCACTCTGGGCACGTGGCCCAGGAGGGCCACCTAG
CircID chr1:111725413|111725631
ORF Type ORF3
Protein Length 61
Nucleotide Length 183
Protein Sequence MGHVPRVALEKPELSCCLALPPPSRLPLGEEGTGGLGLLCLVGRRPRNGAGNFKIKWLFLL
Nucleotide Sequence CTGGGCCACGTGCCCAGAGTGGCTTTAGAGAAGCCGGAGCTGAGCTGCTGCCTGGCCCTTCCCCCTCCGTCCCGGCTGCCTCTAGGTGAGGAGGGAACAGGAGGCCTGGGACTGCTGTGTCTAGTGGGGAGAAGGCCACGGAATGGAGCTGGGAATTTTAAAATCAAGTGGCTATTTCTTCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab