CircRNA Information

General Information
circRNA Basic Information
CircID chr1:112455971|112456131
Strand +
CircType exon
Host Gene ENSG00000143079.13;
Algorism CIRI2;
Sequence CCGGCTCTTCTCCTTCTCCAATTTCAGGCTCAGCTCTCCTGCCTTCTGTCCTTCCTCGGCTGCCTTGTTGGTGGCTTTCTTGCACTCAAGCACTAGCATGGATGAGAGCTGCTTGTGGCGGGAGCGCTCCTCTTCCAGCTGACTAGAGAGCTTCTTCTGTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:112455971|112456131 hsa-miR-130a-5p 0 0 1
chr1:112455971|112456131 hsa-miR-130a-3p 0 0 1
chr1:112455971|112456131 hsa-miR-301a-5p 0 0 1
chr1:112455971|112456131 hsa-miR-301a-3p 0 0 1
chr1:112455971|112456131 hsa-miR-130b-5p 0 0 1
chr1:112455971|112456131 hsa-miR-130b-3p 0 0 1
chr1:112455971|112456131 hsa-miR-520f-5p 0 0 1
chr1:112455971|112456131 hsa-miR-520f-3p 0 0 1
chr1:112455971|112456131 hsa-miR-554 0 0 1
chr1:112455971|112456131 hsa-miR-620 0 0 1
chr1:112455971|112456131 hsa-miR-636 0 0 1
chr1:112455971|112456131 hsa-miR-646 0 0 1
chr1:112455971|112456131 hsa-miR-454-5p 0 0 1
chr1:112455971|112456131 hsa-miR-454-3p 0 0 1
chr1:112455971|112456131 hsa-miR-301b-5p 0 0 1
chr1:112455971|112456131 hsa-miR-301b-3p 0 0 1
chr1:112455971|112456131 hsa-miR-940 0 0 1
chr1:112455971|112456131 hsa-miR-1251-5p 0 0 1
chr1:112455971|112456131 hsa-miR-1251-3p 0 0 1
chr1:112455971|112456131 hsa-miR-1253 0 0 1
chr1:112455971|112456131 hsa-miR-1270 0 0 1
chr1:112455971|112456131 hsa-miR-512-3p 0 0 1
chr1:112455971|112456131 hsa-miR-1207-3p 0 0 1
chr1:112455971|112456131 hsa-miR-7 0 0 1
chr1:112455971|112456131 hsa-miR-658 1 0 0
chr1:112455971|112456131 hsa-miR-298 1 0 0
chr1:112455971|112456131 hsa-miR-936 1 0 0
chr1:112455971|112456131 hsa-miR-3131 1 0 0
chr1:112455971|112456131 hsa-miR-3138 1 0 0
chr1:112455971|112456131 hsa-miR-378c 1 0 0
chr1:112455971|112456131 hsa-miR-4298 1 0 0
chr1:112455971|112456131 hsa-miR-3714 1 0 0
chr1:112455971|112456131 hsa-miR-4476 1 0 0
chr1:112455971|112456131 hsa-miR-4478 1 0 0
chr1:112455971|112456131 hsa-miR-4484 1 0 0
chr1:112455971|112456131 hsa-miR-4487 1 0 0
chr1:112455971|112456131 hsa-miR-4538 1 0 0
chr1:112455971|112456131 hsa-miR-4656 1 0 0
chr1:112455971|112456131 hsa-miR-4658 1 0 0
chr1:112455971|112456131 hsa-miR-4736 1 0 0
chr1:112455971|112456131 hsa-miR-4739 1 0 0
chr1:112455971|112456131 hsa-miR-6125 1 0 0
chr1:112455971|112456131 hsa-miR-6127 1 0 0
chr1:112455971|112456131 hsa-miR-6133 1 0 0
chr1:112455971|112456131 hsa-miR-12115 1 0 0
chr1:112455971|112456131 hsa-miR-219a-1-3p 1 0 0
chr1:112455971|112456131 hsa-miR-6799-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6510-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6089 1 0 0
chr1:112455971|112456131 hsa-miR-6807-5p 1 0 0
chr1:112455971|112456131 hsa-miR-7847-3p 1 0 0
chr1:112455971|112456131 hsa-miR-4695-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6746-5p 1 0 0
chr1:112455971|112456131 hsa-miR-4722-5p 1 0 0
chr1:112455971|112456131 hsa-miR-7160-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6820-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6721-5p 1 0 0
chr1:112455971|112456131 hsa-miR-4655-5p 1 0 0
chr1:112455971|112456131 hsa-miR-27b-5p 1 0 0
chr1:112455971|112456131 hsa-miR-3605-5p 1 0 0
chr1:112455971|112456131 hsa-miR-3190-3p 1 0 0
chr1:112455971|112456131 hsa-miR-3126-5p 1 0 0
chr1:112455971|112456131 hsa-miR-5088-5p 1 0 0
chr1:112455971|112456131 hsa-miR-1226-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6753-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6749-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6847-5p 1 0 0
chr1:112455971|112456131 hsa-miR-3160-3p 1 0 0
chr1:112455971|112456131 hsa-miR-550b-2-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6877-5p 1 0 0
chr1:112455971|112456131 hsa-miR-7112-5p 1 0 0
chr1:112455971|112456131 hsa-miR-7846-3p 1 0 0
chr1:112455971|112456131 hsa-miR-3160-5p 1 0 0
chr1:112455971|112456131 hsa-miR-1207-5p 1 0 0
chr1:112455971|112456131 hsa-miR-1233-5p 1 0 0
chr1:112455971|112456131 hsa-miR-4763-3p 1 0 0
chr1:112455971|112456131 hsa-miR-6778-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6893-5p 1 0 0
chr1:112455971|112456131 hsa-miR-1343-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6726-5p 1 0 0
chr1:112455971|112456131 hsa-miR-1249-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6722-3p 1 0 0
chr1:112455971|112456131 hsa-miR-6797-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6808-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6875-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6879-5p 1 0 0
chr1:112455971|112456131 hsa-miR-5196-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6780b-5p 1 0 0
chr1:112455971|112456131 hsa-miR-4632-5p 1 0 0
chr1:112455971|112456131 hsa-miR-4726-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6729-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6735-5p 1 0 0
chr1:112455971|112456131 hsa-miR-939-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6511a-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6731-5p 1 0 0
chr1:112455971|112456131 hsa-miR-1199-5p 1 0 0
chr1:112455971|112456131 hsa-miR-3173-3p 1 0 0
chr1:112455971|112456131 hsa-miR-6876-5p 1 0 0
chr1:112455971|112456131 hsa-miR-378a-3p 1 0 0
chr1:112455971|112456131 hsa-miR-4667-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6790-5p 1 0 0
chr1:112455971|112456131 hsa-miR-550a-3-5p 1 0 0
chr1:112455971|112456131 hsa-miR-550a-5p 1 0 0
chr1:112455971|112456131 hsa-miR-3928-5p 1 0 0
chr1:112455971|112456131 hsa-miR-6884-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:112455971|112456131
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MLVAFLHSSTSMDESCLWRERSSSS
Nucleotide Sequence TTGTTGGTGGCTTTCTTGCACTCAAGCACTAGCATGGATGAGAGCTGCTTGTGGCGGGAGCGCTCCTCTTCCAGCTGA
CircID chr1:112455971|112456131
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MPSVLPRLPCWWLSCTQALAWMRAACGGSAPLPAD
Nucleotide Sequence CTGCCTTCTGTCCTTCCTCGGCTGCCTTGTTGGTGGCTTTCTTGCACTCAAGCACTAGCATGGATGAGAGCTGCTTGTGGCGGGAGCGCTCCTCTTCCAGCTGACTAG
CircID chr1:112455971|112456131
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MEEERSRHKQLSSMLVLECKKATNKAAEEGQKAGELSLKLEKEKSR
Nucleotide Sequence CTGGAAGAGGAGCGCTCCCGCCACAAGCAGCTCTCATCCATGCTAGTGCTTGAGTGCAAGAAAGCCACCAACAAGGCAGCCGAGGAAGGACAGAAGGCAGGAGAGCTGAGCCTGAAATTGGAGAAGGAGAAGAGCCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab