CircRNA Information

General Information
circRNA Basic Information
CircID chr1:112702157|112702284
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGCTTATGTTTCACTTGGGATACCCAGGCTGTGCCATCAGAGTGCCCCTGGGGGAGGTGTAGGGATGTGGATGCGGGAATGAGGGCAGGCATTGTGTAAGTGGCTGGAAGAAGGGATGTGAGAGCTGG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:112702157|112702284 hsa-miR-183-5p 0 0 1
chr1:112702157|112702284 hsa-miR-183-3p 0 0 1
chr1:112702157|112702284 hsa-miR-494-5p 0 0 1
chr1:112702157|112702284 hsa-miR-494-3p 0 0 1
chr1:112702157|112702284 hsa-miR-661 0 1 1
chr1:112702157|112702284 hsa-miR-1248 0 1 1
chr1:112702157|112702284 hsa-miR-361-3p 0 1 1
chr1:112702157|112702284 hsa-miR-188-5p 0 0 1
chr1:112702157|112702284 hsa-miR-342-3p 0 0 1
chr1:112702157|112702284 hsa-miR-768-3p 0 0 1
chr1:112702157|112702284 hsa-miR-346 1 1 0
chr1:112702157|112702284 hsa-miR-596 1 0 0
chr1:112702157|112702284 hsa-miR-4310 1 0 0
chr1:112702157|112702284 hsa-miR-4290 1 0 0
chr1:112702157|112702284 hsa-miR-4469 0 1 0
chr1:112702157|112702284 hsa-miR-3972 1 0 0
chr1:112702157|112702284 hsa-miR-5100 1 0 0
chr1:112702157|112702284 hsa-miR-6072 1 0 0
chr1:112702157|112702284 hsa-miR-8075 0 1 0
chr1:112702157|112702284 hsa-miR-150-3p 0 1 0
chr1:112702157|112702284 hsa-miR-6749-3p 1 0 0
chr1:112702157|112702284 hsa-miR-18a-3p 0 1 0
chr1:112702157|112702284 hsa-miR-6747-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6836-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6720-5p 0 1 0
chr1:112702157|112702284 hsa-miR-6875-3p 0 1 0
chr1:112702157|112702284 hsa-miR-6849-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6796-3p 1 0 0
chr1:112702157|112702284 hsa-miR-877-3p 1 0 0
chr1:112702157|112702284 hsa-miR-4655-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6798-5p 1 0 0
chr1:112702157|112702284 hsa-miR-6788-3p 1 0 0
chr1:112702157|112702284 hsa-miR-4436b-5p 1 0 0
chr1:112702157|112702284 hsa-miR-4763-5p 1 1 0
chr1:112702157|112702284 hsa-miR-6894-3p 1 1 0
chr1:112702157|112702284 hsa-miR-4691-3p 0 1 0
chr1:112702157|112702284 hsa-miR-7111-3p 1 0 0
chr1:112702157|112702284 hsa-miR-324-5p 1 0 0
chr1:112702157|112702284 hsa-miR-5196-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6742-3p 0 1 0
chr1:112702157|112702284 hsa-miR-1306-5p 0 1 0
chr1:112702157|112702284 hsa-miR-103b 1 0 0
chr1:112702157|112702284 hsa-miR-6870-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6811-3p 1 0 0
chr1:112702157|112702284 hsa-miR-4687-5p 0 1 0
chr1:112702157|112702284 hsa-miR-3180-5p 1 0 0
chr1:112702157|112702284 hsa-miR-4778-3p 0 1 0
chr1:112702157|112702284 hsa-miR-6741-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6752-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6758-3p 0 1 0
chr1:112702157|112702284 hsa-miR-6886-3p 1 0 0
chr1:112702157|112702284 hsa-miR-5088-3p 1 1 0
chr1:112702157|112702284 hsa-miR-328-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6795-3p 1 0 0
chr1:112702157|112702284 hsa-miR-1229-3p 1 0 0
chr1:112702157|112702284 hsa-miR-1287-3p 1 1 0
chr1:112702157|112702284 hsa-miR-6729-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6731-3p 1 0 0
chr1:112702157|112702284 hsa-miR-3127-3p 1 0 0
chr1:112702157|112702284 hsa-miR-4685-3p 1 0 0
chr1:112702157|112702284 hsa-miR-4755-5p 1 0 0
chr1:112702157|112702284 hsa-miR-6866-3p 1 1 0
chr1:112702157|112702284 hsa-miR-4722-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6727-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6512-3p 0 1 0
chr1:112702157|112702284 hsa-miR-6764-5p 0 1 0
chr1:112702157|112702284 hsa-miR-4769-3p 1 0 0
chr1:112702157|112702284 hsa-miR-6814-3p 1 1 0
chr1:112702157|112702284 hsa-miR-6872-5p 1 0 0
chr1:112702157|112702284 hsa-let-7f-1-3p 0 1 0
chr1:112702157|112702284 hsa-miR-4704-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:112702157|112702284
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MPALIPASTSLHLPQGHSDGTAWVSQVKHK
Nucleotide Sequence ATGCCTGCCCTCATTCCCGCATCCACATCCCTACACCTCCCCCAGGGGCACTCTGATGGCACAGCCTGGGTATCCCAAGTGAAACATAAG
CircID chr1:112702157|112702284
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MPSFPHPHPYTSPRGTLMAQPGYPK
Nucleotide Sequence CTGCCCTCATTCCCGCATCCACATCCCTACACCTCCCCCAGGGGCACTCTGATGGCACAGCCTGGGTATCCCAAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab