CircRNA Information

General Information
circRNA Basic Information
CircID chr1:113549515|113622994
Strand +
CircType exon
Host Gene ENSG00000081026.18;
Algorism find_circ;CIRI2;DCC;
Sequence GCAAAGTCATTAATAAAGATTTGCGGCATTACCTAAGTCTTCAGTTTCAAAAAGGATCAATTGACCACAAACTGCAGCAAGTGATCAGAGATAATCTCTACTTGAGAACCATTCCATGCACTACAAGGGCCCCCAGGGATGGAGAAGTACCAGGAGTGGATTATAATTTCATTTCCGTTGAACAGTTCAAAGCACTGGAAGAGAGTGGAGCATTGTTAGAAAGTGGGACATATGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:113549515|113622994 hsa-miR-107 0 0 1
chr1:113549515|113622994 hsa-miR-216a-5p 0 0 1
chr1:113549515|113622994 hsa-miR-216a-3p 0 0 1
chr1:113549515|113622994 hsa-miR-146a-5p 0 0 1
chr1:113549515|113622994 hsa-miR-146a-3p 0 0 1
chr1:113549515|113622994 hsa-miR-374a-5p 0 0 1
chr1:113549515|113622994 hsa-miR-374a-3p 0 0 1
chr1:113549515|113622994 hsa-miR-383-5p 0 0 1
chr1:113549515|113622994 hsa-miR-383-3p 0 0 1
chr1:113549515|113622994 hsa-miR-579-5p 0 0 1
chr1:113549515|113622994 hsa-miR-579-3p 0 0 1
chr1:113549515|113622994 hsa-miR-580-5p 0 0 1
chr1:113549515|113622994 hsa-miR-580-3p 0 0 1
chr1:113549515|113622994 hsa-miR-589-5p 0 0 1
chr1:113549515|113622994 hsa-miR-589-3p 0 0 1
chr1:113549515|113622994 hsa-miR-607 0 0 1
chr1:113549515|113622994 hsa-miR-624-5p 0 0 1
chr1:113549515|113622994 hsa-miR-624-3p 0 0 1
chr1:113549515|113622994 hsa-miR-1264 0 0 1
chr1:113549515|113622994 hsa-miR-665 0 0 1
chr1:113549515|113622994 hsa-miR-374b-5p 0 0 1
chr1:113549515|113622994 hsa-miR-374b-3p 0 0 1
chr1:113549515|113622994 hsa-miR-216b-5p 0 0 1
chr1:113549515|113622994 hsa-miR-216b-3p 0 0 1
chr1:113549515|113622994 hsa-miR-1272 0 0 1
chr1:113549515|113622994 hsa-miR-1322 0 0 1
chr1:113549515|113622994 hsa-miR-296-5p 0 0 1
chr1:113549515|113622994 hsa-miR-767-5p 0 0 1
chr1:113549515|113622994 hsa-miR-1184 0 1 1
chr1:113549515|113622994 hsa-miR-330-3p 0 0 1
chr1:113549515|113622994 hsa-miR-361-3p 0 1 1
chr1:113549515|113622994 hsa-miR-1302 0 0 1
chr1:113549515|113622994 hsa-miR-502-3p 0 0 1
chr1:113549515|113622994 hsa-miR-146b-5p 0 0 1
chr1:113549515|113622994 hsa-miR-501-3p 0 0 1
chr1:113549515|113622994 hsa-miR-509-3-5p 0 0 1
chr1:113549515|113622994 hsa-miR-509-5p 0 1 1
chr1:113549515|113622994 hsa-miR-103 0 0 1
chr1:113549515|113622994 hsa-miR-7 0 0 1
chr1:113549515|113622994 hsa-miR-1300 0 0 1
chr1:113549515|113622994 hsa-miR-1245 0 0 1
chr1:113549515|113622994 hsa-miR-608 1 0 0
chr1:113549515|113622994 hsa-miR-611 1 0 0
chr1:113549515|113622994 hsa-miR-765 1 0 0
chr1:113549515|113622994 hsa-miR-1183 1 0 0
chr1:113549515|113622994 hsa-miR-1268a 1 0 0
chr1:113549515|113622994 hsa-miR-3138 1 0 0
chr1:113549515|113622994 hsa-miR-1268b 1 0 0
chr1:113549515|113622994 hsa-miR-4434 0 1 0
chr1:113549515|113622994 hsa-miR-4494 0 1 0
chr1:113549515|113622994 hsa-miR-4516 0 1 0
chr1:113549515|113622994 hsa-miR-4518 1 0 0
chr1:113549515|113622994 hsa-miR-4534 0 1 0
chr1:113549515|113622994 hsa-miR-4651 1 0 0
chr1:113549515|113622994 hsa-miR-5192 1 0 0
chr1:113549515|113622994 hsa-miR-5703 0 1 0
chr1:113549515|113622994 hsa-miR-5739 1 0 0
chr1:113549515|113622994 hsa-miR-6090 1 0 0
chr1:113549515|113622994 hsa-miR-7703 1 0 0
chr1:113549515|113622994 hsa-miR-8085 1 0 0
chr1:113549515|113622994 hsa-miR-12115 1 1 0
chr1:113549515|113622994 hsa-miR-12117 1 0 0
chr1:113549515|113622994 hsa-miR-12126 0 1 0
chr1:113549515|113622994 hsa-miR-12128 1 1 0
chr1:113549515|113622994 hsa-miR-4433b-3p 1 0 0
chr1:113549515|113622994 hsa-miR-4433a-3p 1 1 0
chr1:113549515|113622994 hsa-miR-6728-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6804-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6757-5p 1 1 0
chr1:113549515|113622994 hsa-miR-6820-5p 1 0 0
chr1:113549515|113622994 hsa-miR-4655-5p 1 0 0
chr1:113549515|113622994 hsa-miR-197-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6782-5p 1 1 0
chr1:113549515|113622994 hsa-miR-5006-5p 1 0 0
chr1:113549515|113622994 hsa-miR-5088-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6847-5p 1 0 0
chr1:113549515|113622994 hsa-miR-3202 1 1 0
chr1:113549515|113622994 hsa-miR-3162-5p 1 0 0
chr1:113549515|113622994 hsa-miR-5581-3p 0 1 0
chr1:113549515|113622994 hsa-miR-5585-5p 0 1 0
chr1:113549515|113622994 hsa-miR-3152-3p 1 0 0
chr1:113549515|113622994 hsa-miR-6775-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6819-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6722-3p 1 0 0
chr1:113549515|113622994 hsa-miR-6788-5p 1 0 0
chr1:113549515|113622994 hsa-miR-4685-5p 1 0 0
chr1:113549515|113622994 hsa-miR-4745-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6731-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6758-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6856-5p 1 0 0
chr1:113549515|113622994 hsa-miR-6799-3p 1 0 0
chr1:113549515|113622994 hsa-miR-6805-3p 1 0 0
chr1:113549515|113622994 hsa-miR-10400-3p 1 0 0
chr1:113549515|113622994 hsa-miR-6837-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:113549515|113622994
ORF Type ORF1
Protein Length 72
Nucleotide Length 216
Protein Sequence LRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYD
Nucleotide Sequence TTGCGGCATTACCTAAGTCTTCAGTTTCAAAAAGGATCAATTGACCACAAACTGCAGCAAGTGATCAGAGATAATCTCTACTTGAGAACCATTCCATGCACTACAAGGGCCCCCAGGGATGGAGAAGTACCAGGAGTGGATTATAATTTCATTTCCGTTGAACAGTTCAAAGCACTGGAAGAGAGTGGAGCATTGTTAGAAAGTGGGACATATGAT
CircID chr1:113549515|113622994
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MFNGNEIIIHSWYFSIPGGPCSAWNGSQVEIISDHLLQFVVN
Nucleotide Sequence CTGTTCAACGGAAATGAAATTATAATCCACTCCTGGTACTTCTCCATCCCTGGGGGCCCTTGTAGTGCATGGAATGGTTCTCAAGTAGAGATTATCTCTGATCACTTGCTGCAGTTTGTGGTCAATTGA
CircID chr1:113549515|113622994
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MEKYQEWIIISFPLNSSKHWKRVEHC
Nucleotide Sequence ATGGAGAAGTACCAGGAGTGGATTATAATTTCATTTCCGTTGAACAGTTCAAAGCACTGGAAGAGAGTGGAGCATTGTTAG
CircID chr1:113549515|113622994
ORF Type ORF3
Protein Length 74
Nucleotide Length 222
Protein Sequence MRHYLSLQFQKGSIDHKLQQVIRDNLYLRTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDAP
Nucleotide Sequence TTGCGGCATTACCTAAGTCTTCAGTTTCAAAAAGGATCAATTGACCACAAACTGCAGCAAGTGATCAGAGATAATCTCTACTTGAGAACCATTCCATGCACTACAAGGGCCCCCAGGGATGGAGAAGTACCAGGAGTGGATTATAATTTCATTTCCGTTGAACAGTTCAAAGCACTGGAAGAGAGTGGAGCATTGTTAGAAAGTGGGACATATGATGCACCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:113549515|113622994 DGCR8 1 0 0
chr1:113549515|113622994 U2AF2 4 0 0
chr1:113549515|113622994 NOP58 0 0 3
chr1:113549515|113622994 ADAR 0 1 0
chr1:113549515|113622994 ACIN1 0 0 1
chr1:113549515|113622994 DDX54 0 0 5
chr1:113549515|113622994 HNRNPL 0 2 0
chr1:113549515|113622994 TARDBP 1 0 0
chr1:113549515|113622994 ATXN2 1 0 0
chr1:113549515|113622994 EIF4A3 2 2 4
chr1:113549515|113622994 FBL 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab