CircRNA Information

General Information
circRNA Basic Information
CircID chr1:113980434|113980553
Strand +
CircType exon
Host Gene ENSG00000116774.10;
Algorism CIRI2;
Sequence CTTCTCATCAAACTCTACACAGGGCAGAGCTGGGTTCTGGGTCTCCAGATAGTCTACCTCCCGCTCCAGACGATCCACTCTCCCGGAGATGGTGTCGGCCTCAGTTCTGAGTGCCTCCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:113980434|113980553 hsa-let-7b-5p 0 0 1
chr1:113980434|113980553 hsa-let-7b-3p 0 0 1
chr1:113980434|113980553 hsa-let-7c-5p 0 0 1
chr1:113980434|113980553 hsa-let-7c-3p 0 0 1
chr1:113980434|113980553 hsa-let-7d-5p 0 0 1
chr1:113980434|113980553 hsa-let-7d-3p 0 0 1
chr1:113980434|113980553 hsa-let-7e-5p 0 0 1
chr1:113980434|113980553 hsa-let-7e-3p 0 0 1
chr1:113980434|113980553 hsa-miR-98-5p 0 0 1
chr1:113980434|113980553 hsa-miR-98-3p 0 0 1
chr1:113980434|113980553 hsa-let-7g-5p 0 0 1
chr1:113980434|113980553 hsa-let-7g-3p 0 0 1
chr1:113980434|113980553 hsa-let-7i-5p 0 0 1
chr1:113980434|113980553 hsa-let-7i-3p 0 0 1
chr1:113980434|113980553 hsa-miR-379-5p 0 0 1
chr1:113980434|113980553 hsa-miR-379-3p 0 0 1
chr1:113980434|113980553 hsa-miR-650 0 0 1
chr1:113980434|113980553 hsa-miR-874-5p 0 0 1
chr1:113980434|113980553 hsa-miR-874-3p 0 0 1
chr1:113980434|113980553 hsa-miR-1253 0 0 1
chr1:113980434|113980553 hsa-miR-146b-3p 0 0 1
chr1:113980434|113980553 hsa-miR-324-3p 0 0 1
chr1:113980434|113980553 hsa-let-7a 0 0 1
chr1:113980434|113980553 hsa-let-7f 0 0 1
chr1:113980434|113980553 hsa-miR-1300 0 0 1
chr1:113980434|113980553 hsa-miR-516b 0 0 1
chr1:113980434|113980553 hsa-miR-3612 0 1 0
chr1:113980434|113980553 hsa-miR-3689c 1 0 0
chr1:113980434|113980553 hsa-miR-4669 1 0 0
chr1:113980434|113980553 hsa-miR-4683 1 1 0
chr1:113980434|113980553 hsa-miR-4706 1 0 0
chr1:113980434|113980553 hsa-miR-4739 1 0 0
chr1:113980434|113980553 hsa-miR-5192 0 1 0
chr1:113980434|113980553 hsa-miR-6127 1 0 0
chr1:113980434|113980553 hsa-miR-8056 1 1 0
chr1:113980434|113980553 hsa-miR-8072 1 0 0
chr1:113980434|113980553 hsa-miR-8085 0 1 0
chr1:113980434|113980553 hsa-miR-4433b-3p 1 0 0
chr1:113980434|113980553 hsa-miR-4433a-3p 1 0 0
chr1:113980434|113980553 hsa-miR-6825-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6799-5p 1 1 0
chr1:113980434|113980553 hsa-miR-6089 1 0 0
chr1:113980434|113980553 hsa-miR-6746-5p 1 1 0
chr1:113980434|113980553 hsa-miR-4722-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6787-3p 0 1 0
chr1:113980434|113980553 hsa-miR-3180-3p 1 0 0
chr1:113980434|113980553 hsa-miR-6748-5p 1 0 0
chr1:113980434|113980553 hsa-miR-3190-3p 1 0 0
chr1:113980434|113980553 hsa-miR-30b-3p 1 0 0
chr1:113980434|113980553 hsa-miR-4786-3p 0 1 0
chr1:113980434|113980553 hsa-miR-6771-5p 1 0 0
chr1:113980434|113980553 hsa-miR-516b-5p 0 1 0
chr1:113980434|113980553 hsa-miR-4649-3p 0 1 0
chr1:113980434|113980553 hsa-miR-589-5p 0 1 0
chr1:113980434|113980553 hsa-miR-1233-5p 1 0 0
chr1:113980434|113980553 hsa-miR-3689b-3p 1 0 0
chr1:113980434|113980553 hsa-miR-6778-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6816-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6752-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6851-5p 1 0 0
chr1:113980434|113980553 hsa-miR-1249-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6780a-5p 1 1 0
chr1:113980434|113980553 hsa-miR-7111-5p 1 0 0
chr1:113980434|113980553 hsa-miR-328-5p 1 0 0
chr1:113980434|113980553 hsa-miR-3689a-3p 1 0 0
chr1:113980434|113980553 hsa-miR-4745-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6883-5p 0 1 0
chr1:113980434|113980553 hsa-miR-6889-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6831-5p 0 1 0
chr1:113980434|113980553 hsa-miR-1238-5p 1 0 0
chr1:113980434|113980553 hsa-miR-4758-5p 1 0 0
chr1:113980434|113980553 hsa-miR-6731-5p 0 1 0
chr1:113980434|113980553 hsa-miR-6849-5p 0 1 0
chr1:113980434|113980553 hsa-miR-1295b-5p 0 1 0
chr1:113980434|113980553 hsa-miR-1912-3p 0 1 0
chr1:113980434|113980553 hsa-miR-3927-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:113980434|113980553
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MGLQIVYLPLQTIHSPGDGVGLSSECLP
Nucleotide Sequence CTGGGTCTCCAGATAGTCTACCTCCCGCTCCAGACGATCCACTCTCCCGGAGATGGTGTCGGCCTCAGTTCTGAGTGCCTCCCG
CircID chr1:113980434|113980553
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGSGSPDSLPPAPDDPLSRRWCRPQF
Nucleotide Sequence CTGGGTTCTGGGTCTCCAGATAGTCTACCTCCCGCTCCAGACGATCCACTCTCCCGGAGATGGTGTCGGCCTCAGTTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab