CircRNA Information

General Information
circRNA Basic Information
CircID chr1:116398715|116399002
Strand +
CircType exon
Host Gene ENSG00000163399.14;
Algorism CIRI2;
Sequence GGGGTGATCTCGGGAATGTTACTGGTTAAGGTATAAGCAATGGATTTCTTCAAGTTATCAAAGATCAGACGACCTATGAAAACCAAGATTTTTTACTGTTAGCTTATGAGACAAGCACACTGGAAACTGAACATATCCAAGAAGTATACAGAAATGGATGCTAATGGGCAGTATCTGAATAAGATCTTGGTGTACACCTTAAATAGCTCTCACCTTCCTCTACTCCAGTCACAATTGAGGCAAAGTTGTCATCCAGAAGAATCATGTCAGCAGCTTGCTTGGACACAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:116398715|116399002 hsa-miR-18a-5p 0 0 1
chr1:116398715|116399002 hsa-miR-18a-3p 0 0 1
chr1:116398715|116399002 hsa-miR-212-5p 0 0 1
chr1:116398715|116399002 hsa-miR-212-3p 0 0 1
chr1:116398715|116399002 hsa-miR-132-5p 0 0 1
chr1:116398715|116399002 hsa-miR-132-3p 0 0 1
chr1:116398715|116399002 hsa-miR-134-5p 0 0 1
chr1:116398715|116399002 hsa-miR-134-3p 0 0 1
chr1:116398715|116399002 hsa-miR-18b-5p 0 0 1
chr1:116398715|116399002 hsa-miR-18b-3p 0 0 1
chr1:116398715|116399002 hsa-miR-376b-5p 0 0 1
chr1:116398715|116399002 hsa-miR-376b-3p 0 0 1
chr1:116398715|116399002 hsa-miR-432-5p 0 0 1
chr1:116398715|116399002 hsa-miR-432-3p 0 0 1
chr1:116398715|116399002 hsa-miR-636 0 1 1
chr1:116398715|116399002 hsa-miR-648 0 0 1
chr1:116398715|116399002 hsa-miR-758-5p 0 0 1
chr1:116398715|116399002 hsa-miR-758-3p 0 0 1
chr1:116398715|116399002 hsa-miR-802 0 0 1
chr1:116398715|116399002 hsa-miR-190b-5p 0 0 1
chr1:116398715|116399002 hsa-miR-190b-3p 0 0 1
chr1:116398715|116399002 hsa-miR-877-5p 0 0 1
chr1:116398715|116399002 hsa-miR-877-3p 0 0 1
chr1:116398715|116399002 hsa-miR-543 0 1 1
chr1:116398715|116399002 hsa-miR-1299 0 0 1
chr1:116398715|116399002 hsa-miR-1255a 0 0 1
chr1:116398715|116399002 hsa-miR-1261 0 0 1
chr1:116398715|116399002 hsa-miR-1825 0 0 1
chr1:116398715|116399002 hsa-miR-145-5p 0 0 1
chr1:116398715|116399002 hsa-miR-199a-5p 0 0 1
chr1:116398715|116399002 hsa-miR-875-5p 0 0 1
chr1:116398715|116399002 hsa-miR-628-5p 0 0 1
chr1:116398715|116399002 hsa-miR-199b-5p 0 0 1
chr1:116398715|116399002 hsa-miR-548c-3p 0 0 1
chr1:116398715|116399002 hsa-miR-1255b 0 0 1
chr1:116398715|116399002 hsa-miR-218 0 0 1
chr1:116398715|116399002 hsa-miR-516b 0 0 1
chr1:116398715|116399002 hsa-miR-376a 0 0 1
chr1:116398715|116399002 hsa-miR-549 0 0 1
chr1:116398715|116399002 hsa-miR-190 0 0 1
chr1:116398715|116399002 hsa-miR-765 1 0 0
chr1:116398715|116399002 hsa-miR-936 1 0 0
chr1:116398715|116399002 hsa-miR-3125 1 1 0
chr1:116398715|116399002 hsa-miR-3132 1 1 0
chr1:116398715|116399002 hsa-miR-3154 1 0 0
chr1:116398715|116399002 hsa-miR-4271 1 0 0
chr1:116398715|116399002 hsa-miR-3652 1 0 0
chr1:116398715|116399002 hsa-miR-3916 0 1 0
chr1:116398715|116399002 hsa-miR-4430 1 0 0
chr1:116398715|116399002 hsa-miR-3689c 1 0 0
chr1:116398715|116399002 hsa-miR-4710 1 0 0
chr1:116398715|116399002 hsa-miR-4739 1 0 0
chr1:116398715|116399002 hsa-miR-5706 0 1 0
chr1:116398715|116399002 hsa-miR-6127 1 0 0
chr1:116398715|116399002 hsa-miR-6129 1 0 0
chr1:116398715|116399002 hsa-miR-29b-1-5p 0 1 0
chr1:116398715|116399002 hsa-miR-4433b-3p 1 0 0
chr1:116398715|116399002 hsa-miR-6894-5p 1 0 0
chr1:116398715|116399002 hsa-miR-6799-5p 1 0 0
chr1:116398715|116399002 hsa-miR-6804-5p 1 0 0
chr1:116398715|116399002 hsa-miR-7847-3p 1 0 0
chr1:116398715|116399002 hsa-miR-4474-3p 1 0 0
chr1:116398715|116399002 hsa-miR-197-5p 1 0 0
chr1:116398715|116399002 hsa-miR-7108-5p 1 0 0
chr1:116398715|116399002 hsa-miR-3202 1 0 0
chr1:116398715|116399002 hsa-miR-6824-5p 1 0 0
chr1:116398715|116399002 hsa-miR-6719-3p 0 1 0
chr1:116398715|116399002 hsa-miR-219a-2-3p 0 1 0
chr1:116398715|116399002 hsa-miR-329-5p 0 1 0
chr1:116398715|116399002 hsa-miR-4740-3p 0 1 0
chr1:116398715|116399002 hsa-miR-3689b-3p 1 0 0
chr1:116398715|116399002 hsa-miR-5001-5p 1 0 0
chr1:116398715|116399002 hsa-miR-6726-5p 1 0 0
chr1:116398715|116399002 hsa-miR-1249-5p 1 0 0
chr1:116398715|116399002 hsa-miR-4728-5p 1 0 0
chr1:116398715|116399002 hsa-miR-5196-5p 1 0 0
chr1:116398715|116399002 hsa-miR-6858-5p 1 0 0
chr1:116398715|116399002 hsa-miR-3198 1 0 0
chr1:116398715|116399002 hsa-miR-6736-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:116398715|116399002
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence MRQAHWKLNISKKYTEMDANGQYLNKILVYTLNSSHLPLLQSQLRQSCHPEESCQQLAWTH
Nucleotide Sequence ATGAGACAAGCACACTGGAAACTGAACATATCCAAGAAGTATACAGAAATGGATGCTAATGGGCAGTATCTGAATAAGATCTTGGTGTACACCTTAAATAGCTCTCACCTTCCTCTACTCCAGTCACAATTGAGGCAAAGTTGTCATCCAGAAGAATCATGTCAGCAGCTTGCTTGGACACAT
CircID chr1:116398715|116399002
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MPISIHFCILLGYVQFPVCLSHKLTVKNLGFHRSSDL
Nucleotide Sequence CTGCCCATTAGCATCCATTTCTGTATACTTCTTGGATATGTTCAGTTTCCAGTGTGCTTGTCTCATAAGCTAACAGTAAAAAATCTTGGTTTTCATAGGTCGTCTGATCTTTGA
CircID chr1:116398715|116399002
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MVFIGRLIFDNLKKSIAYTLTSNIPEIT
Nucleotide Sequence TTGGTTTTCATAGGTCGTCTGATCTTTGATAACTTGAAGAAATCCATTGCTTATACCTTAACCAGTAACATTCCCGAGATCACC
CircID chr1:116398715|116399002
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MILLDDNFASIVTGVEEGESYLRCTPRSYSDTAH
Nucleotide Sequence ATGATTCTTCTGGATGACAACTTTGCCTCAATTGTGACTGGAGTAGAGGAAGGTGAGAGCTATTTAAGGTGTACACCAAGATCTTATTCAGATACTGCCCATTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab