CircRNA Information

General Information
circRNA Basic Information
CircID chr1:116989839|116990053
Strand -
CircType exon
Host Gene ENSG00000134247.9;
Algorism CIRI2;
Sequence CCTCACCATCTGAGGGGCTCCCTGAGATCTTGGTAGAGGAGGCCCCTCCTGCCCAGACCTTCGTTTGTTTCCCCGGTGGCCCTTGCTTCTTGCTTTGCAGACTGCCTGCAGCCATGATTTTGTCACTGACATCTGTGAGCCAAAGACTGAGCCTTTTTGGCAGGAATAATAAGCAATACTACACAACTTGCTACTTTCAGAAAACTTTTTTTTAG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:116989839|116990053 hsa-miR-223-5p 0 0 1
chr1:116989839|116990053 hsa-miR-223-3p 0 0 1
chr1:116989839|116990053 hsa-miR-137-5p 0 0 1
chr1:116989839|116990053 hsa-miR-137-3p 0 0 1
chr1:116989839|116990053 hsa-miR-382-5p 0 0 1
chr1:116989839|116990053 hsa-miR-382-3p 0 0 1
chr1:116989839|116990053 hsa-miR-493-5p 0 0 1
chr1:116989839|116990053 hsa-miR-493-3p 0 0 1
chr1:116989839|116990053 hsa-miR-495-5p 0 0 1
chr1:116989839|116990053 hsa-miR-495-3p 0 0 1
chr1:116989839|116990053 hsa-miR-527 0 0 1
chr1:116989839|116990053 hsa-miR-561-5p 0 0 1
chr1:116989839|116990053 hsa-miR-561-3p 0 0 1
chr1:116989839|116990053 hsa-miR-562 0 0 1
chr1:116989839|116990053 hsa-miR-604 0 0 1
chr1:116989839|116990053 hsa-miR-612 1 0 1
chr1:116989839|116990053 hsa-miR-622 0 0 1
chr1:116989839|116990053 hsa-miR-647 0 0 1
chr1:116989839|116990053 hsa-miR-1205 0 0 1
chr1:116989839|116990053 hsa-miR-1266-5p 0 0 1
chr1:116989839|116990053 hsa-miR-1266-3p 0 0 1
chr1:116989839|116990053 hsa-miR-1225-3p 0 0 1
chr1:116989839|116990053 hsa-miR-423-5p 0 0 1
chr1:116989839|116990053 hsa-miR-330-3p 0 0 1
chr1:116989839|116990053 hsa-miR-518a-5p 0 0 1
chr1:116989839|116990053 hsa-miR-9 0 0 1
chr1:116989839|116990053 hsa-miR-1285 0 0 1
chr1:116989839|116990053 hsa-miR-24 0 0 1
chr1:116989839|116990053 hsa-miR-2110 1 0 0
chr1:116989839|116990053 hsa-miR-4271 1 0 0
chr1:116989839|116990053 hsa-miR-3937 1 0 0
chr1:116989839|116990053 hsa-miR-4706 1 0 0
chr1:116989839|116990053 hsa-miR-4734 1 0 0
chr1:116989839|116990053 hsa-miR-6165 1 0 0
chr1:116989839|116990053 hsa-miR-8060 1 0 0
chr1:116989839|116990053 hsa-miR-8089 1 0 0
chr1:116989839|116990053 hsa-miR-6861-5p 1 0 0
chr1:116989839|116990053 hsa-miR-7851-3p 1 0 0
chr1:116989839|116990053 hsa-miR-6746-5p 1 0 0
chr1:116989839|116990053 hsa-miR-4722-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6727-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6806-5p 1 0 0
chr1:116989839|116990053 hsa-miR-4655-5p 1 0 0
chr1:116989839|116990053 hsa-miR-8069 1 0 0
chr1:116989839|116990053 hsa-miR-6827-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6798-5p 1 0 0
chr1:116989839|116990053 hsa-miR-4786-3p 1 0 0
chr1:116989839|116990053 hsa-miR-6784-5p 1 0 0
chr1:116989839|116990053 hsa-miR-4640-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6792-5p 1 0 0
chr1:116989839|116990053 hsa-miR-4766-5p 1 0 0
chr1:116989839|116990053 hsa-miR-181d-3p 1 0 0
chr1:116989839|116990053 hsa-miR-4645-3p 1 0 0
chr1:116989839|116990053 hsa-miR-6870-5p 1 0 0
chr1:116989839|116990053 hsa-miR-1343-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6722-3p 1 0 0
chr1:116989839|116990053 hsa-miR-6774-5p 1 0 0
chr1:116989839|116990053 hsa-miR-5196-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6780b-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6836-5p 1 0 0
chr1:116989839|116990053 hsa-miR-1909-3p 1 0 0
chr1:116989839|116990053 hsa-miR-4725-3p 1 0 0
chr1:116989839|116990053 hsa-miR-6777-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6889-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6511b-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6750-5p 1 0 0
chr1:116989839|116990053 hsa-miR-3184-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6791-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6762-5p 1 0 0
chr1:116989839|116990053 hsa-miR-9851-5p 1 0 0
chr1:116989839|116990053 hsa-miR-6837-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:116989839|116990053
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MFPRWPLLLALQTACSHDFVTDICEPKTEPFWQE
Nucleotide Sequence TTGTTTCCCCGGTGGCCCTTGCTTCTTGCTTTGCAGACTGCCTGCAGCCATGATTTTGTCACTGACATCTGTGAGCCAAAGACTGAGCCTTTTTGGCAGGAATAA
CircID chr1:116989839|116990053
ORF Type ORF2
Protein Length 61
Nucleotide Length 186
Protein Sequence MVEEAPPAQTFVCFPGGPCFLLCRLPAAMILSLTSVSQRLSLFGRNNKQYYTTCYFQKTFF
Nucleotide Sequence TTGGTAGAGGAGGCCCCTCCTGCCCAGACCTTCGTTTGTTTCCCCGGTGGCCCTTGCTTCTTGCTTTGCAGACTGCCTGCAGCCATGATTTTGTCACTGACATCTGTGAGCCAAAGACTGAGCCTTTTTGGCAGGAATAATAAGCAATACTACACAACTTGCTACTTTCAGAAAACTTTTTTTTAG
CircID chr1:116989839|116990053
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MKVASCVVLLIIPAKKAQSLAHRCQ
Nucleotide Sequence CTGAAAGTAGCAAGTTGTGTAGTATTGCTTATTATTCCTGCCAAAAAGGCTCAGTCTTTGGCTCACAGATGTCAGTGA
CircID chr1:116989839|116990053
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MPKRLSLWLTDVSDKIMAAGSLQSKKQGPPGKQTKVWAGGASSTKISGSPSDGE
Nucleotide Sequence CTGCCAAAAAGGCTCAGTCTTTGGCTCACAGATGTCAGTGACAAAATCATGGCTGCAGGCAGTCTGCAAAGCAAGAAGCAAGGGCCACCGGGGAAACAAACGAAGGTCTGGGCAGGAGGGGCCTCCTCTACCAAGATCTCAGGGAGCCCCTCAGATGGTGAG
CircID chr1:116989839|116990053
ORF Type ORF5
Protein Length 62
Nucleotide Length 186
Protein Sequence MCSIAYYSCQKGSVFGSQMSVTKSWLQAVCKARSKGHRGNKRRSGQEGPPLPRSQGAPQMVR
Nucleotide Sequence TTGTGTAGTATTGCTTATTATTCCTGCCAAAAAGGCTCAGTCTTTGGCTCACAGATGTCAGTGACAAAATCATGGCTGCAGGCAGTCTGCAAAGCAAGAAGCAAGGGCCACCGGGGAAACAAACGAAGGTCTGGGCAGGAGGGGCCTCCTCTACCAAGATCTCAGGGAGCCCCTCAGATGGTGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab