CircRNA Information

General Information
circRNA Basic Information
CircID chr1:11789720|11789911
Strand +
CircType exon
Host Gene ENSG00000177000.9;
Algorism CIRI2;
Sequence AGGGGCCCCAGATCTGCCTGGGCCTGTGCAGCAGCCCAGCTTCCTGGTGTATTTTTCAGGTAGGCCCTTGTCCTGCCAGCTGCCTTCCTCATCCCCTCGTCCTGTCCCAGAGGTTATCTGCCTGGCCTGGCTCCCCACGAGTCACCTGCAAGCCCCAGGGCCTGGGGGCAGTGACTGGCAGGTGCAGATGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:11789720|11789911 hsa-miR-326 0 0 1
chr1:11789720|11789911 hsa-miR-637 0 0 1
chr1:11789720|11789911 hsa-miR-657 0 0 1
chr1:11789720|11789911 hsa-miR-939-5p 0 0 1
chr1:11789720|11789911 hsa-miR-939-3p 0 0 1
chr1:11789720|11789911 hsa-miR-1286 0 1 1
chr1:11789720|11789911 hsa-miR-1291 0 0 1
chr1:11789720|11789911 hsa-miR-1255a 0 0 1
chr1:11789720|11789911 hsa-miR-125a-3p 1 1 1
chr1:11789720|11789911 hsa-miR-296-5p 0 0 1
chr1:11789720|11789911 hsa-miR-491-5p 0 1 1
chr1:11789720|11789911 hsa-miR-361-3p 0 0 1
chr1:11789720|11789911 hsa-miR-1207-3p 0 0 1
chr1:11789720|11789911 hsa-miR-1207-5p 1 0 1
chr1:11789720|11789911 hsa-miR-324-3p 1 1 1
chr1:11789720|11789911 hsa-miR-330-5p 0 0 1
chr1:11789720|11789911 hsa-miR-1302 0 0 1
chr1:11789720|11789911 hsa-miR-1255b 0 0 1
chr1:11789720|11789911 hsa-miR-650 1 0 0
chr1:11789720|11789911 hsa-miR-663a 1 0 0
chr1:11789720|11789911 hsa-miR-665 1 1 0
chr1:11789720|11789911 hsa-miR-760 1 0 0
chr1:11789720|11789911 hsa-miR-1268a 1 0 0
chr1:11789720|11789911 hsa-miR-1538 1 0 0
chr1:11789720|11789911 hsa-miR-1913 0 1 0
chr1:11789720|11789911 hsa-miR-2110 1 0 0
chr1:11789720|11789911 hsa-miR-3122 1 1 0
chr1:11789720|11789911 hsa-miR-3185 1 0 0
chr1:11789720|11789911 hsa-miR-320e 0 1 0
chr1:11789720|11789911 hsa-miR-4298 1 1 0
chr1:11789720|11789911 hsa-miR-4327 0 1 0
chr1:11789720|11789911 hsa-miR-3916 1 0 0
chr1:11789720|11789911 hsa-miR-3937 1 0 0
chr1:11789720|11789911 hsa-miR-3943 1 0 0
chr1:11789720|11789911 hsa-miR-1268b 1 0 0
chr1:11789720|11789911 hsa-miR-4440 1 0 0
chr1:11789720|11789911 hsa-miR-4449 1 0 0
chr1:11789720|11789911 hsa-miR-4476 0 1 0
chr1:11789720|11789911 hsa-miR-4498 1 1 0
chr1:11789720|11789911 hsa-miR-4512 0 1 0
chr1:11789720|11789911 hsa-miR-4514 0 1 0
chr1:11789720|11789911 hsa-miR-4515 1 0 0
chr1:11789720|11789911 hsa-miR-4525 1 0 0
chr1:11789720|11789911 hsa-miR-4533 1 0 0
chr1:11789720|11789911 hsa-miR-4656 1 0 0
chr1:11789720|11789911 hsa-miR-4673 1 1 0
chr1:11789720|11789911 hsa-miR-4688 1 0 0
chr1:11789720|11789911 hsa-miR-4689 1 0 0
chr1:11789720|11789911 hsa-miR-4692 0 1 0
chr1:11789720|11789911 hsa-miR-4710 1 0 0
chr1:11789720|11789911 hsa-miR-4739 1 0 0
chr1:11789720|11789911 hsa-miR-5090 1 0 0
chr1:11789720|11789911 hsa-miR-5194 1 0 0
chr1:11789720|11789911 hsa-miR-6075 0 1 0
chr1:11789720|11789911 hsa-miR-6085 1 0 0
chr1:11789720|11789911 hsa-miR-6125 1 0 0
chr1:11789720|11789911 hsa-miR-6127 1 0 0
chr1:11789720|11789911 hsa-miR-6133 1 0 0
chr1:11789720|11789911 hsa-miR-7150 0 1 0
chr1:11789720|11789911 hsa-miR-8089 1 0 0
chr1:11789720|11789911 hsa-miR-211-3p 1 0 0
chr1:11789720|11789911 hsa-miR-150-3p 1 0 0
chr1:11789720|11789911 hsa-miR-6734-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6747-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6765-5p 1 0 0
chr1:11789720|11789911 hsa-miR-7106-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6857-5p 1 0 0
chr1:11789720|11789911 hsa-miR-1972 1 1 0
chr1:11789720|11789911 hsa-miR-5187-5p 1 1 0
chr1:11789720|11789911 hsa-miR-6089 1 0 0
chr1:11789720|11789911 hsa-miR-4695-5p 1 0 0
chr1:11789720|11789911 hsa-miR-505-5p 0 1 0
chr1:11789720|11789911 hsa-miR-4755-3p 0 1 0
chr1:11789720|11789911 hsa-miR-6890-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6721-5p 1 0 0
chr1:11789720|11789911 hsa-miR-7845-5p 1 0 0
chr1:11789720|11789911 hsa-miR-3605-5p 1 0 0
chr1:11789720|11789911 hsa-miR-3151-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6829-5p 0 1 0
chr1:11789720|11789911 hsa-miR-6732-5p 1 0 0
chr1:11789720|11789911 hsa-miR-3190-3p 1 0 0
chr1:11789720|11789911 hsa-miR-6827-5p 0 1 0
chr1:11789720|11789911 hsa-miR-6798-5p 1 0 0
chr1:11789720|11789911 hsa-miR-486-3p 1 0 0
chr1:11789720|11789911 hsa-miR-6881-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6810-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6852-5p 0 1 0
chr1:11789720|11789911 hsa-miR-1226-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6740-5p 1 0 0
chr1:11789720|11789911 hsa-miR-204-3p 1 0 0
chr1:11789720|11789911 hsa-miR-4640-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6753-5p 1 0 0
chr1:11789720|11789911 hsa-miR-4764-5p 1 0 0
chr1:11789720|11789911 hsa-miR-92b-5p 1 1 0
chr1:11789720|11789911 hsa-miR-3677-3p 1 1 0
chr1:11789720|11789911 hsa-miR-4787-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6800-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6781-5p 1 0 0
chr1:11789720|11789911 hsa-miR-7112-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6804-3p 0 1 0
chr1:11789720|11789911 hsa-miR-1295b-3p 0 1 0
chr1:11789720|11789911 hsa-miR-483-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6890-3p 0 1 0
chr1:11789720|11789911 hsa-miR-1233-5p 1 0 0
chr1:11789720|11789911 hsa-miR-4763-3p 1 0 0
chr1:11789720|11789911 hsa-miR-6778-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6812-5p 1 0 0
chr1:11789720|11789911 hsa-miR-1343-5p 1 1 0
chr1:11789720|11789911 hsa-miR-5001-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6726-5p 1 1 0
chr1:11789720|11789911 hsa-miR-6743-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6752-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6754-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6803-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6815-5p 1 1 0
chr1:11789720|11789911 hsa-miR-1249-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6751-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6763-5p 1 1 0
chr1:11789720|11789911 hsa-miR-6779-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6780a-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6879-5p 1 0 0
chr1:11789720|11789911 hsa-miR-7111-5p 1 1 0
chr1:11789720|11789911 hsa-miR-3620-5p 0 1 0
chr1:11789720|11789911 hsa-miR-4728-5p 1 0 0
chr1:11789720|11789911 hsa-miR-5196-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6780b-5p 1 1 0
chr1:11789720|11789911 hsa-miR-328-5p 1 0 0
chr1:11789720|11789911 hsa-miR-4649-5p 1 0 0
chr1:11789720|11789911 hsa-miR-4725-3p 1 0 0
chr1:11789720|11789911 hsa-miR-6729-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6738-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6795-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6848-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6858-5p 1 1 0
chr1:11789720|11789911 hsa-miR-6887-5p 1 0 0
chr1:11789720|11789911 hsa-miR-4436b-3p 1 0 0
chr1:11789720|11789911 hsa-miR-4723-5p 1 0 0
chr1:11789720|11789911 hsa-miR-4633-3p 1 1 0
chr1:11789720|11789911 hsa-miR-6511a-5p 1 1 0
chr1:11789720|11789911 hsa-miR-6511b-5p 1 0 0
chr1:11789720|11789911 hsa-miR-1914-3p 1 0 0
chr1:11789720|11789911 hsa-miR-4646-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6876-5p 0 1 0
chr1:11789720|11789911 hsa-miR-6891-5p 1 0 0
chr1:11789720|11789911 hsa-miR-4667-5p 1 0 0
chr1:11789720|11789911 hsa-miR-6791-5p 1 1 0
chr1:11789720|11789911 hsa-miR-4722-3p 0 1 0
chr1:11789720|11789911 hsa-miR-9851-5p 0 1 0
chr1:11789720|11789911 hsa-miR-1255b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:11789720|11789911
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MPAAFLIPSSCPRGYLPGLAPHESPASPRAWGQ
Nucleotide Sequence CTGCCAGCTGCCTTCCTCATCCCCTCGTCCTGTCCCAGAGGTTATCTGCCTGGCCTGGCTCCCCACGAGTCACCTGCAAGCCCCAGGGCCTGGGGGCAGTGA
CircID chr1:11789720|11789911
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MPGPVQQPSFLVYFSGRPLSCQLPSSSPRPVPEVICLAWLPTSHLQAPGPGGSDWQVQM
Nucleotide Sequence CTGCCTGGGCCTGTGCAGCAGCCCAGCTTCCTGGTGTATTTTTCAGGTAGGCCCTTGTCCTGCCAGCTGCCTTCCTCATCCCCTCGTCCTGTCCCAGAGGTTATCTGCCTGGCCTGGCTCCCCACGAGTCACCTGCAAGCCCCAGGGCCTGGGGGCAGTGACTGGCAGGTGCAGATG
CircID chr1:11789720|11789911
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MGLCSSPASWCIFQVGPCPASCLPHPLVLSQRLSAWPGSPRVTCKPQGLGAVTGRCRW
Nucleotide Sequence CTGGGCCTGTGCAGCAGCCCAGCTTCCTGGTGTATTTTTCAGGTAGGCCCTTGTCCTGCCAGCTGCCTTCCTCATCCCCTCGTCCTGTCCCAGAGGTTATCTGCCTGGCCTGGCTCCCCACGAGTCACCTGCAAGCCCCAGGGCCTGGGGGCAGTGACTGGCAGGTGCAGATGG
CircID chr1:11789720|11789911
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MGQDEGMRKAAGRTRAYLKNTPGSWAAAQAQADLGP
Nucleotide Sequence CTGGGACAGGACGAGGGGATGAGGAAGGCAGCTGGCAGGACAAGGGCCTACCTGAAAAATACACCAGGAAGCTGGGCTGCTGCACAGGCCCAGGCAGATCTGGGGCCC
CircID chr1:11789720|11789911
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MHLPVTAPRPWGLQVTRGEPGQADNLWDRTRG
Nucleotide Sequence CTGCACCTGCCAGTCACTGCCCCCAGGCCCTGGGGCTTGCAGGTGACTCGTGGGGAGCCAGGCCAGGCAGATAACCTCTGGGACAGGACGAGGGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab