CircRNA Information

General Information
circRNA Basic Information
CircID chr1:11789731|11789872
Strand -
CircType exon
Host Gene ENSG00000177000.9;
Algorism CIRI2;
Sequence CTGCCAGTCACTGCCCCCAGGCCCTGGGGCTTGCAGGTGACTCGTGGGGAGCCAGGCCAGGCAGATAACCTCTGGGACAGGACGAGGGGATGAGGAAGGCAGCTGGCAGGACAAGGGCCTACCTGAAAAATACACCAGGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:11789731|11789872 hsa-miR-22-5p 0 0 1
chr1:11789731|11789872 hsa-miR-22-3p 0 0 1
chr1:11789731|11789872 hsa-miR-34a-5p 0 0 1
chr1:11789731|11789872 hsa-miR-34a-3p 0 0 1
chr1:11789731|11789872 hsa-miR-134-5p 0 0 1
chr1:11789731|11789872 hsa-miR-134-3p 0 0 1
chr1:11789731|11789872 hsa-miR-149-5p 0 0 1
chr1:11789731|11789872 hsa-miR-149-3p 0 0 1
chr1:11789731|11789872 hsa-miR-154-5p 0 0 1
chr1:11789731|11789872 hsa-miR-154-3p 0 0 1
chr1:11789731|11789872 hsa-miR-449a 0 1 1
chr1:11789731|11789872 hsa-miR-637 0 0 1
chr1:11789731|11789872 hsa-miR-661 1 0 1
chr1:11789731|11789872 hsa-miR-449b-5p 0 0 1
chr1:11789731|11789872 hsa-miR-449b-3p 0 0 1
chr1:11789731|11789872 hsa-miR-1202 0 1 1
chr1:11789731|11789872 hsa-miR-486-3p 0 0 1
chr1:11789731|11789872 hsa-miR-34c-5p 0 0 1
chr1:11789731|11789872 hsa-miR-1254 0 0 1
chr1:11789731|11789872 hsa-miR-1204 1 0 0
chr1:11789731|11789872 hsa-miR-2861 0 1 0
chr1:11789731|11789872 hsa-miR-3176 0 1 0
chr1:11789731|11789872 hsa-miR-4323 0 1 0
chr1:11789731|11789872 hsa-miR-4449 1 0 0
chr1:11789731|11789872 hsa-miR-3972 0 1 0
chr1:11789731|11789872 hsa-miR-5190 0 1 0
chr1:11789731|11789872 hsa-miR-12127 0 1 0
chr1:11789731|11789872 hsa-miR-6749-3p 1 0 0
chr1:11789731|11789872 hsa-miR-4747-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6747-3p 1 1 0
chr1:11789731|11789872 hsa-miR-6875-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6787-3p 1 0 0
chr1:11789731|11789872 hsa-miR-1915-5p 1 0 0
chr1:11789731|11789872 hsa-miR-6845-3p 1 0 0
chr1:11789731|11789872 hsa-miR-4655-3p 1 1 0
chr1:11789731|11789872 hsa-miR-4633-5p 1 0 0
chr1:11789731|11789872 hsa-miR-6735-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6882-3p 1 1 0
chr1:11789731|11789872 hsa-miR-1247-5p 1 0 0
chr1:11789731|11789872 hsa-miR-4783-3p 1 0 0
chr1:11789731|11789872 hsa-miR-5001-3p 0 1 0
chr1:11789731|11789872 hsa-miR-3667-3p 0 1 0
chr1:11789731|11789872 hsa-miR-6749-5p 1 0 0
chr1:11789731|11789872 hsa-miR-2276-3p 0 1 0
chr1:11789731|11789872 hsa-miR-6769a-3p 1 0 0
chr1:11789731|11789872 hsa-miR-339-5p 1 0 0
chr1:11789731|11789872 hsa-miR-6870-3p 1 1 0
chr1:11789731|11789872 hsa-miR-1236-3p 1 0 0
chr1:11789731|11789872 hsa-miR-7106-3p 1 0 0
chr1:11789731|11789872 hsa-miR-2355-3p 0 1 0
chr1:11789731|11789872 hsa-miR-670-3p 0 1 0
chr1:11789731|11789872 hsa-miR-7848-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6826-3p 1 1 0
chr1:11789731|11789872 hsa-miR-6886-3p 1 0 0
chr1:11789731|11789872 hsa-miR-5088-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6738-3p 0 1 0
chr1:11789731|11789872 hsa-miR-6795-3p 1 1 0
chr1:11789731|11789872 hsa-miR-3124-3p 0 1 0
chr1:11789731|11789872 hsa-miR-6729-3p 1 1 0
chr1:11789731|11789872 hsa-miR-6780b-3p 0 1 0
chr1:11789731|11789872 hsa-miR-4423-5p 0 1 0
chr1:11789731|11789872 hsa-miR-6775-5p 1 0 0
chr1:11789731|11789872 hsa-miR-6743-5p 0 1 0
chr1:11789731|11789872 hsa-miR-4685-3p 1 0 0
chr1:11789731|11789872 hsa-miR-4755-5p 1 0 0
chr1:11789731|11789872 hsa-miR-1915-3p 0 1 0
chr1:11789731|11789872 hsa-miR-4685-5p 0 1 0
chr1:11789731|11789872 hsa-miR-4745-3p 1 0 0
chr1:11789731|11789872 hsa-miR-4722-3p 1 1 0
chr1:11789731|11789872 hsa-miR-6727-3p 0 1 0
chr1:11789731|11789872 hsa-miR-6893-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6805-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6837-5p 0 1 0
chr1:11789731|11789872 hsa-miR-6775-3p 1 0 0
chr1:11789731|11789872 hsa-miR-6891-3p 0 1 0
chr1:11789731|11789872 hsa-miR-6764-5p 0 1 0
chr1:11789731|11789872 hsa-miR-4769-3p 1 0 0
chr1:11789731|11789872 hsa-miR-655-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:11789731|11789872
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence LPVTAPRPWGLQVTRGEPGQADNLWDRTRG
Nucleotide Sequence CTGCCAGTCACTGCCCCCAGGCCCTGGGGCTTGCAGGTGACTCGTGGGGAGCCAGGCCAGGCAGATAACCTCTGGGACAGGACGAGGGGATGA
CircID chr1:11789731|11789872
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MPAAFLIPSSCPRGYLPGLAPHESPASPRAWGQ
Nucleotide Sequence CTGCCAGCTGCCTTCCTCATCCCCTCGTCCTGTCCCAGAGGTTATCTGCCTGGCCTGGCTCCCCACGAGTCACCTGCAAGCCCCAGGGCCTGGGGGCAGTGA
CircID chr1:11789731|11789872
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MVYFSGRPLSCQLPSSSPRPVPEVICLAWLPTSHLQAPGPGGSDWQ
Nucleotide Sequence CTGGTGTATTTTTCAGGTAGGCCCTTGTCCTGCCAGCTGCCTTCCTCATCCCCTCGTCCTGTCCCAGAGGTTATCTGCCTGGCCTGGCTCCCCACGAGTCACCTGCAAGCCCCAGGGCCTGGGGGCAGTGACTGGCAG
CircID chr1:11789731|11789872
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MSQRLSAWPGSPRVTCKPQGLGAVTG
Nucleotide Sequence CTGTCCCAGAGGTTATCTGCCTGGCCTGGCTCCCCACGAGTCACCTGCAAGCCCCAGGGCCTGGGGGCAGTGACTGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab