CircRNA Information

General Information
circRNA Basic Information
CircID chr1:1180573|1180860
Strand +
CircType exon
Host Gene ENSG00000162571.12;
Algorism CIRI2;
Sequence CTGGCCTGGACCCCCCCCGGCACCTTGCTGGCCTTGCTCATGGCCCGTGCCCGTCCCCGAAGGGTGCTGAGCAGCCCGATCTTGGTGGTGAGGAGCTTGTTGTTGGGAAGCTGGTACAGCAGCTGCTCTCCTGGAGGTCAGAGGCCAGGGCTCGTGTGGAGGGAGCGCAGGACCTCGGTCCCCACCCCTCCAACCTGCCCTGTGCTCCGGCCCAGGAGGCCCCTGCAGGCTGCCCGCCTCTGGTGCCGGCTCCCGCTACCTTCCCGGAAGCTGCCGTAGCTGTCTCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:1180573|1180860 hsa-miR-18a-5p 0 0 1
chr1:1180573|1180860 hsa-miR-18a-3p 0 0 1
chr1:1180573|1180860 hsa-miR-197-5p 0 0 1
chr1:1180573|1180860 hsa-miR-197-3p 0 0 1
chr1:1180573|1180860 hsa-miR-18b-5p 0 0 1
chr1:1180573|1180860 hsa-miR-18b-3p 0 0 1
chr1:1180573|1180860 hsa-miR-564 0 1 1
chr1:1180573|1180860 hsa-miR-596 0 1 1
chr1:1180573|1180860 hsa-miR-608 0 0 1
chr1:1180573|1180860 hsa-miR-634 0 0 1
chr1:1180573|1180860 hsa-miR-646 0 1 1
chr1:1180573|1180860 hsa-miR-657 0 0 1
chr1:1180573|1180860 hsa-miR-665 0 0 1
chr1:1180573|1180860 hsa-miR-1203 0 1 1
chr1:1180573|1180860 hsa-miR-1205 0 1 1
chr1:1180573|1180860 hsa-miR-491-5p 1 0 1
chr1:1180573|1180860 hsa-miR-615-5p 0 0 1
chr1:1180573|1180860 hsa-miR-542-5p 0 0 1
chr1:1180573|1180860 hsa-miR-767-3p 0 1 1
chr1:1180573|1180860 hsa-miR-220b 0 0 1
chr1:1180573|1180860 hsa-miR-1233 0 0 1
chr1:1180573|1180860 hsa-miR-220c 0 0 1
chr1:1180573|1180860 hsa-miR-768-5p 0 0 1
chr1:1180573|1180860 hsa-miR-558 0 1 0
chr1:1180573|1180860 hsa-miR-663a 1 0 0
chr1:1180573|1180860 hsa-miR-762 1 1 0
chr1:1180573|1180860 hsa-miR-1291 0 1 0
chr1:1180573|1180860 hsa-miR-1539 0 1 0
chr1:1180573|1180860 hsa-miR-2278 0 1 0
chr1:1180573|1180860 hsa-miR-3132 1 0 0
chr1:1180573|1180860 hsa-miR-3141 0 1 0
chr1:1180573|1180860 hsa-miR-3176 0 1 0
chr1:1180573|1180860 hsa-miR-3181 1 0 0
chr1:1180573|1180860 hsa-miR-3196 1 0 0
chr1:1180573|1180860 hsa-miR-4268 0 1 0
chr1:1180573|1180860 hsa-miR-4281 1 0 0
chr1:1180573|1180860 hsa-miR-3135b 0 1 0
chr1:1180573|1180860 hsa-miR-4469 0 1 0
chr1:1180573|1180860 hsa-miR-4488 1 0 0
chr1:1180573|1180860 hsa-miR-4498 1 0 0
chr1:1180573|1180860 hsa-miR-4523 0 1 0
chr1:1180573|1180860 hsa-miR-4533 1 0 0
chr1:1180573|1180860 hsa-miR-3960 1 0 0
chr1:1180573|1180860 hsa-miR-4651 0 1 0
chr1:1180573|1180860 hsa-miR-4656 1 0 0
chr1:1180573|1180860 hsa-miR-4669 1 0 0
chr1:1180573|1180860 hsa-miR-4706 1 1 0
chr1:1180573|1180860 hsa-miR-4718 0 1 0
chr1:1180573|1180860 hsa-miR-4741 1 0 0
chr1:1180573|1180860 hsa-miR-4767 1 0 0
chr1:1180573|1180860 hsa-miR-5090 0 1 0
chr1:1180573|1180860 hsa-miR-5194 0 1 0
chr1:1180573|1180860 hsa-miR-5787 1 0 0
chr1:1180573|1180860 hsa-miR-8072 1 0 0
chr1:1180573|1180860 hsa-miR-8089 1 0 0
chr1:1180573|1180860 hsa-miR-504-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6765-5p 1 1 0
chr1:1180573|1180860 hsa-miR-6861-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6825-5p 1 1 0
chr1:1180573|1180860 hsa-miR-1233-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6728-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6515-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6089 1 0 0
chr1:1180573|1180860 hsa-miR-6746-5p 1 0 0
chr1:1180573|1180860 hsa-miR-593-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6727-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6721-5p 1 0 0
chr1:1180573|1180860 hsa-miR-1292-5p 1 0 0
chr1:1180573|1180860 hsa-miR-3180-3p 1 0 0
chr1:1180573|1180860 hsa-miR-6829-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6782-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6810-5p 0 1 0
chr1:1180573|1180860 hsa-miR-3944-3p 0 1 0
chr1:1180573|1180860 hsa-miR-204-3p 0 1 0
chr1:1180573|1180860 hsa-miR-4640-5p 1 0 0
chr1:1180573|1180860 hsa-miR-885-3p 1 0 0
chr1:1180573|1180860 hsa-miR-92b-5p 1 1 0
chr1:1180573|1180860 hsa-miR-6749-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6878-3p 0 1 0
chr1:1180573|1180860 hsa-miR-4743-5p 0 1 0
chr1:1180573|1180860 hsa-miR-149-3p 1 1 0
chr1:1180573|1180860 hsa-miR-6736-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6789-5p 1 1 0
chr1:1180573|1180860 hsa-miR-6781-5p 0 1 0
chr1:1180573|1180860 hsa-miR-3922-5p 0 1 0
chr1:1180573|1180860 hsa-miR-3191-3p 1 1 0
chr1:1180573|1180860 hsa-miR-7106-3p 0 1 0
chr1:1180573|1180860 hsa-miR-4727-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6871-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6508-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6501-3p 0 1 0
chr1:1180573|1180860 hsa-miR-2277-5p 1 1 0
chr1:1180573|1180860 hsa-miR-4524a-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6779-3p 0 1 0
chr1:1180573|1180860 hsa-miR-10400-5p 1 0 0
chr1:1180573|1180860 hsa-miR-1233-5p 1 0 0
chr1:1180573|1180860 hsa-miR-4763-3p 1 1 0
chr1:1180573|1180860 hsa-miR-6778-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6787-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6775-5p 1 1 0
chr1:1180573|1180860 hsa-miR-5001-5p 1 1 0
chr1:1180573|1180860 hsa-miR-6726-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6752-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6756-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6813-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6851-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6722-3p 1 1 0
chr1:1180573|1180860 hsa-miR-6879-5p 0 1 0
chr1:1180573|1180860 hsa-miR-3620-5p 1 0 0
chr1:1180573|1180860 hsa-miR-4728-5p 1 1 0
chr1:1180573|1180860 hsa-miR-5196-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6836-5p 1 0 0
chr1:1180573|1180860 hsa-miR-10396b-5p 1 0 0
chr1:1180573|1180860 hsa-miR-1237-5p 1 0 0
chr1:1180573|1180860 hsa-miR-1909-3p 1 1 0
chr1:1180573|1180860 hsa-miR-328-5p 1 0 0
chr1:1180573|1180860 hsa-miR-4632-5p 1 1 0
chr1:1180573|1180860 hsa-miR-4726-5p 1 0 0
chr1:1180573|1180860 hsa-miR-4749-5p 1 1 0
chr1:1180573|1180860 hsa-miR-6729-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6846-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6848-5p 1 0 0
chr1:1180573|1180860 hsa-miR-4436b-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6885-5p 1 0 0
chr1:1180573|1180860 hsa-miR-10394-3p 1 0 0
chr1:1180573|1180860 hsa-miR-3085-5p 1 0 0
chr1:1180573|1180860 hsa-miR-4665-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6791-3p 0 1 0
chr1:1180573|1180860 hsa-miR-4747-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6766-5p 0 1 0
chr1:1180573|1180860 hsa-miR-4757-5p 0 1 0
chr1:1180573|1180860 hsa-miR-6837-5p 1 0 0
chr1:1180573|1180860 hsa-miR-6775-3p 0 1 0
chr1:1180573|1180860 hsa-miR-9851-3p 0 1 0
chr1:1180573|1180860 hsa-miR-6511b-3p 1 1 0
chr1:1180573|1180860 hsa-miR-4691-5p 0 1 0
chr1:1180573|1180860 hsa-miR-3922-3p 0 1 0
chr1:1180573|1180860 hsa-miR-7157-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:1180573|1180860
ORF Type ORF1
Protein Length 92
Nucleotide Length 279
Protein Sequence LAWTPPGTLLALLMARARPRRVLSSPILVVRSLLLGSWYSSCSPGGQRPGLVWRERRTSVPTPPTCPVLRPRRPLQAARLWCRLPLPSRKLP
Nucleotide Sequence CTGGCCTGGACCCCCCCCGGCACCTTGCTGGCCTTGCTCATGGCCCGTGCCCGTCCCCGAAGGGTGCTGAGCAGCCCGATCTTGGTGGTGAGGAGCTTGTTGTTGGGAAGCTGGTACAGCAGCTGCTCTCCTGGAGGTCAGAGGCCAGGGCTCGTGTGGAGGGAGCGCAGGACCTCGGTCCCCACCCCTCCAACCTGCCCTGTGCTCCGGCCCAGGAGGCCCCTGCAGGCTGCCCGCCTCTGGTGCCGGCTCCCGCTACCTTCCCGGAAGCTGCCGTAG
CircID chr1:1180573|1180860
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MEVRGQGSCGGSAGPRSPPLQPALCSGPGGPCRLPASGAGSRYLPGSCRSCL
Nucleotide Sequence CTGGAGGTCAGAGGCCAGGGCTCGTGTGGAGGGAGCGCAGGACCTCGGTCCCCACCCCTCCAACCTGCCCTGTGCTCCGGCCCAGGAGGCCCCTGCAGGCTGCCCGCCTCTGGTGCCGGCTCCCGCTACCTTCCCGGAAGCTGCCGTAGCTGTCTC
CircID chr1:1180573|1180860
ORF Type ORF3
Protein Length 94
Nucleotide Length 282
Protein Sequence MDPPRHLAGLAHGPCPSPKGAEQPDLGGEELVVGKLVQQLLSWRSEARARVEGAQDLGPHPSNLPCAPAQEAPAGCPPLVPAPATFPEAAVAVS
Nucleotide Sequence CTGGACCCCCCCCGGCACCTTGCTGGCCTTGCTCATGGCCCGTGCCCGTCCCCGAAGGGTGCTGAGCAGCCCGATCTTGGTGGTGAGGAGCTTGTTGTTGGGAAGCTGGTACAGCAGCTGCTCTCCTGGAGGTCAGAGGCCAGGGCTCGTGTGGAGGGAGCGCAGGACCTCGGTCCCCACCCCTCCAACCTGCCCTGTGCTCCGGCCCAGGAGGCCCCTGCAGGCTGCCCGCCTCTGGTGCCGGCTCCCGCTACCTTCCCGGAAGCTGCCGTAGCTGTCTCG
CircID chr1:1180573|1180860
ORF Type ORF4
Protein Length 76
Nucleotide Length 228
Protein Sequence MQGPPGPEHRAGWRGGDRGPALPPHEPWPLTSRRAAAVPASQQQAPHHQDRAAQHPSGTGTGHEQGQQGAGGGPGQ
Nucleotide Sequence CTGCAGGGGCCTCCTGGGCCGGAGCACAGGGCAGGTTGGAGGGGTGGGGACCGAGGTCCTGCGCTCCCTCCACACGAGCCCTGGCCTCTGACCTCCAGGAGAGCAGCTGCTGTACCAGCTTCCCAACAACAAGCTCCTCACCACCAAGATCGGGCTGCTCAGCACCCTTCGGGGACGGGCACGGGCCATGAGCAAGGCCAGCAAGGTGCCGGGGGGGGTCCAGGCCAG
CircID chr1:1180573|1180860
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MGRSTGQVGGVGTEVLRSLHTSPGL
Nucleotide Sequence CTGGGCCGGAGCACAGGGCAGGTTGGAGGGGTGGGGACCGAGGTCCTGCGCTCCCTCCACACGAGCCCTGGCCTCTGA
CircID chr1:1180573|1180860
ORF Type ORF6
Protein Length 40
Nucleotide Length 120
Protein Sequence MLYQLPNNKLLTTKIGLLSTLRGRARAMSKASKVPGGVQA
Nucleotide Sequence CTGCTGTACCAGCTTCCCAACAACAAGCTCCTCACCACCAAGATCGGGCTGCTCAGCACCCTTCGGGGACGGGCACGGGCCATGAGCAAGGCCAGCAAGGTGCCGGGGGGGGTCCAGGCC
CircID chr1:1180573|1180860
ORF Type ORF7
Protein Length 51
Nucleotide Length 156
Protein Sequence MEGWGPRSCAPSTRALASDLQESSCCTSFPTTSSSPPRSGCSAPFGDGHGP
Nucleotide Sequence TTGGAGGGGTGGGGACCGAGGTCCTGCGCTCCCTCCACACGAGCCCTGGCCTCTGACCTCCAGGAGAGCAGCTGCTGTACCAGCTTCCCAACAACAAGCTCCTCACCACCAAGATCGGGCTGCTCAGCACCCTTCGGGGACGGGCACGGGCCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab