CircRNA Information

General Information
circRNA Basic Information
CircID chr1:11840927|11841127
Strand -
CircType exon
Host Gene ENSG00000011021.20;
Algorism CIRI2;
Sequence GTCTACCCTAATTCTTAACATTGCAGCTTTCTCTCCATCTGCAGATTATTCCCAGTCTCCCAGTAACACGTTTCTACCCAGATCCTTTTTCATTTCCTTAAGTTTTGATCTCCGTCTTCCTGATGAAGCAGGCAGAGCTCAGAGGATCTTGGCATCACCCACCAAAGTTAGCTGAAAGCAGGGCACTCCTGGATAAAGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:11840927|11841127 hsa-miR-185-5p 0 0 1
chr1:11840927|11841127 hsa-miR-185-3p 0 0 1
chr1:11840927|11841127 hsa-miR-320a-5p 0 0 1
chr1:11840927|11841127 hsa-miR-320a-3p 0 0 1
chr1:11840927|11841127 hsa-miR-379-5p 0 0 1
chr1:11840927|11841127 hsa-miR-379-3p 0 0 1
chr1:11840927|11841127 hsa-miR-1323 0 0 1
chr1:11840927|11841127 hsa-miR-874-5p 0 0 1
chr1:11840927|11841127 hsa-miR-874-3p 0 0 1
chr1:11840927|11841127 hsa-miR-541-5p 0 0 1
chr1:11840927|11841127 hsa-miR-541-3p 0 0 1
chr1:11840927|11841127 hsa-miR-665 0 0 1
chr1:11840927|11841127 hsa-miR-873-5p 0 0 1
chr1:11840927|11841127 hsa-miR-873-3p 0 0 1
chr1:11840927|11841127 hsa-miR-1205 0 0 1
chr1:11840927|11841127 hsa-miR-1262 0 0 1
chr1:11840927|11841127 hsa-miR-548o-3p 0 0 1
chr1:11840927|11841127 hsa-miR-548o 0 0 1
chr1:11840927|11841127 hsa-miR-146b-3p 0 0 1
chr1:11840927|11841127 hsa-miR-1184 0 0 1
chr1:11840927|11841127 hsa-miR-654-5p 0 0 1
chr1:11840927|11841127 hsa-miR-320b 0 1 1
chr1:11840927|11841127 hsa-miR-320c 1 1 1
chr1:11840927|11841127 hsa-miR-320d 0 1 1
chr1:11840927|11841127 hsa-miR-7 0 0 1
chr1:11840927|11841127 hsa-miR-9 0 0 1
chr1:11840927|11841127 hsa-miR-326 0 1 0
chr1:11840927|11841127 hsa-miR-608 1 0 0
chr1:11840927|11841127 hsa-miR-637 1 0 0
chr1:11840927|11841127 hsa-miR-760 1 0 0
chr1:11840927|11841127 hsa-miR-1182 1 1 0
chr1:11840927|11841127 hsa-miR-3125 1 0 0
chr1:11840927|11841127 hsa-miR-3132 1 1 0
chr1:11840927|11841127 hsa-miR-3175 1 0 0
chr1:11840927|11841127 hsa-miR-4306 1 1 0
chr1:11840927|11841127 hsa-miR-3908 1 0 0
chr1:11840927|11841127 hsa-miR-3921 0 1 0
chr1:11840927|11841127 hsa-miR-4534 0 1 0
chr1:11840927|11841127 hsa-miR-3978 1 0 0
chr1:11840927|11841127 hsa-miR-4706 1 0 0
chr1:11840927|11841127 hsa-miR-5093 1 1 0
chr1:11840927|11841127 hsa-miR-5192 1 0 0
chr1:11840927|11841127 hsa-miR-5680 1 0 0
chr1:11840927|11841127 hsa-miR-6088 1 0 0
chr1:11840927|11841127 hsa-miR-6745 1 0 0
chr1:11840927|11841127 hsa-miR-8085 1 0 0
chr1:11840927|11841127 hsa-miR-12118 1 0 0
chr1:11840927|11841127 hsa-miR-134-5p 1 0 0
chr1:11840927|11841127 hsa-miR-3194-3p 0 1 0
chr1:11840927|11841127 hsa-miR-6861-5p 1 0 0
chr1:11840927|11841127 hsa-miR-8071 1 0 0
chr1:11840927|11841127 hsa-miR-6089 1 0 0
chr1:11840927|11841127 hsa-miR-3192-5p 1 1 0
chr1:11840927|11841127 hsa-miR-6880-5p 1 0 0
chr1:11840927|11841127 hsa-miR-197-5p 1 1 0
chr1:11840927|11841127 hsa-miR-6748-5p 1 0 0
chr1:11840927|11841127 hsa-miR-3156-5p 1 0 0
chr1:11840927|11841127 hsa-miR-1229-5p 1 1 0
chr1:11840927|11841127 hsa-miR-30c-2-3p 1 0 0
chr1:11840927|11841127 hsa-miR-5001-3p 0 1 0
chr1:11840927|11841127 hsa-miR-7161-3p 0 1 0
chr1:11840927|11841127 hsa-miR-6834-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6780a-3p 0 1 0
chr1:11840927|11841127 hsa-miR-149-3p 1 0 0
chr1:11840927|11841127 hsa-miR-3158-5p 0 1 0
chr1:11840927|11841127 hsa-miR-6886-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6878-5p 0 1 0
chr1:11840927|11841127 hsa-miR-1180-3p 1 0 0
chr1:11840927|11841127 hsa-miR-6755-5p 0 1 0
chr1:11840927|11841127 hsa-miR-3173-5p 0 1 0
chr1:11840927|11841127 hsa-miR-1273h-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6769b-5p 0 1 0
chr1:11840927|11841127 hsa-miR-6726-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6769a-5p 0 1 0
chr1:11840927|11841127 hsa-miR-6722-3p 1 0 0
chr1:11840927|11841127 hsa-miR-6763-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6780a-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6797-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6794-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6795-5p 1 0 0
chr1:11840927|11841127 hsa-miR-6887-5p 1 0 0
chr1:11840927|11841127 hsa-miR-3187-5p 1 0 0
chr1:11840927|11841127 hsa-miR-4646-5p 1 0 0
chr1:11840927|11841127 hsa-miR-4667-5p 1 0 0
chr1:11840927|11841127 hsa-miR-3529-5p 1 0 0
chr1:11840927|11841127 hsa-miR-4653-5p 0 1 0
chr1:11840927|11841127 hsa-miR-450a-1-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:11840927|11841127
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MQLSLHLQIIPSLPVTRFYPDPFSFP
Nucleotide Sequence TTGCAGCTTTCTCTCCATCTGCAGATTATTCCCAGTCTCCCAGTAACACGTTTCTACCCAGATCCTTTTTCATTTCCTTAA
CircID chr1:11840927|11841127
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MISVFLMKQAELRGSWHHPPKLAESRALLDKA
Nucleotide Sequence TTGATCTCCGTCTTCCTGATGAAGCAGGCAGAGCTCAGAGGATCTTGGCATCACCCACCAAAGTTAGCTGAAAGCAGGGCACTCCTGGATAAAGCA
CircID chr1:11840927|11841127
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MPASSGRRRSKLKEMKKDLGRNVLLGDWE
Nucleotide Sequence CTGCCTGCTTCATCAGGAAGACGGAGATCAAAACTTAAGGAAATGAAAAAGGATCTGGGTAGAAACGTGTTACTGGGAGACTGGGAATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab