CircRNA Information

General Information
circRNA Basic Information
CircID chr1:12206765|12206984
Strand -
CircType exon
Host Gene ENSG00000028137.15;
Algorism CIRI2;
Sequence CCAGGTCAATGTCACCTGCATCGTGAACGTCTGTAGCAGCTCTGACCACAGCTCACAGTGCTCCTCCCAAGCCAGCTCCACAATGGGAGACACAGATTCCAGCCCCTCGGAGTCCCCGAAGGACGAGCAGGTCCCCTTCTCCAAGGAGGAATGTGCCTTTCGGTCACAGCTGGAGACGCCAGAGACCCTGCTGGGGAGCACCGAAGAGAAGCCCCTGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:12206765|12206984 hsa-miR-192-5p 0 0 1
chr1:12206765|12206984 hsa-miR-192-3p 0 0 1
chr1:12206765|12206984 hsa-miR-214-5p 0 0 1
chr1:12206765|12206984 hsa-miR-214-3p 0 0 1
chr1:12206765|12206984 hsa-miR-215-5p 0 0 1
chr1:12206765|12206984 hsa-miR-215-3p 0 0 1
chr1:12206765|12206984 hsa-miR-221-5p 0 0 1
chr1:12206765|12206984 hsa-miR-221-3p 0 0 1
chr1:12206765|12206984 hsa-miR-222-5p 0 0 1
chr1:12206765|12206984 hsa-miR-222-3p 0 0 1
chr1:12206765|12206984 hsa-miR-150-5p 0 0 1
chr1:12206765|12206984 hsa-miR-150-3p 0 0 1
chr1:12206765|12206984 hsa-miR-326 0 0 1
chr1:12206765|12206984 hsa-miR-492 0 0 1
chr1:12206765|12206984 hsa-miR-432-5p 0 0 1
chr1:12206765|12206984 hsa-miR-432-3p 0 0 1
chr1:12206765|12206984 hsa-miR-506-5p 0 0 1
chr1:12206765|12206984 hsa-miR-506-3p 0 0 1
chr1:12206765|12206984 hsa-miR-558 0 0 1
chr1:12206765|12206984 hsa-miR-593-5p 0 0 1
chr1:12206765|12206984 hsa-miR-593-3p 0 0 1
chr1:12206765|12206984 hsa-miR-620 0 0 1
chr1:12206765|12206984 hsa-miR-631 0 0 1
chr1:12206765|12206984 hsa-miR-657 1 0 1
chr1:12206765|12206984 hsa-miR-766-5p 0 0 1
chr1:12206765|12206984 hsa-miR-766-3p 0 0 1
chr1:12206765|12206984 hsa-miR-765 0 0 1
chr1:12206765|12206984 hsa-miR-942-5p 0 0 1
chr1:12206765|12206984 hsa-miR-942-3p 0 0 1
chr1:12206765|12206984 hsa-miR-1182 0 0 1
chr1:12206765|12206984 hsa-miR-1236-5p 0 0 1
chr1:12206765|12206984 hsa-miR-1236-3p 0 0 1
chr1:12206765|12206984 hsa-miR-1250-5p 0 0 1
chr1:12206765|12206984 hsa-miR-1250-3p 0 0 1
chr1:12206765|12206984 hsa-miR-1270 0 0 1
chr1:12206765|12206984 hsa-miR-125a-3p 0 0 1
chr1:12206765|12206984 hsa-miR-532-3p 0 0 1
chr1:12206765|12206984 hsa-miR-542-5p 0 0 1
chr1:12206765|12206984 hsa-miR-423-5p 0 0 1
chr1:12206765|12206984 hsa-miR-1207-5p 1 0 1
chr1:12206765|12206984 hsa-miR-330-5p 0 0 1
chr1:12206765|12206984 hsa-miR-124 0 0 1
chr1:12206765|12206984 hsa-miR-762 1 0 0
chr1:12206765|12206984 hsa-miR-2861 1 0 0
chr1:12206765|12206984 hsa-miR-3907 1 0 0
chr1:12206765|12206984 hsa-miR-4487 1 0 0
chr1:12206765|12206984 hsa-miR-4498 1 0 0
chr1:12206765|12206984 hsa-miR-4535 1 0 0
chr1:12206765|12206984 hsa-miR-1587 1 0 0
chr1:12206765|12206984 hsa-miR-4688 1 0 0
chr1:12206765|12206984 hsa-miR-4706 1 0 0
chr1:12206765|12206984 hsa-miR-4734 1 0 0
chr1:12206765|12206984 hsa-miR-4739 1 0 0
chr1:12206765|12206984 hsa-miR-4741 1 0 0
chr1:12206765|12206984 hsa-miR-5698 1 0 0
chr1:12206765|12206984 hsa-miR-5787 1 0 0
chr1:12206765|12206984 hsa-miR-6085 1 0 0
chr1:12206765|12206984 hsa-miR-8089 1 0 0
chr1:12206765|12206984 hsa-miR-12115 1 0 0
chr1:12206765|12206984 hsa-miR-7106-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6894-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6799-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6833-5p 1 0 0
chr1:12206765|12206984 hsa-miR-7114-5p 1 0 0
chr1:12206765|12206984 hsa-miR-7847-3p 1 0 0
chr1:12206765|12206984 hsa-miR-7160-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6727-5p 1 0 0
chr1:12206765|12206984 hsa-miR-3622b-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6796-5p 1 0 0
chr1:12206765|12206984 hsa-miR-185-3p 1 0 0
chr1:12206765|12206984 hsa-miR-6834-5p 1 0 0
chr1:12206765|12206984 hsa-miR-149-3p 1 0 0
chr1:12206765|12206984 hsa-miR-6789-5p 1 0 0
chr1:12206765|12206984 hsa-miR-4707-5p 1 0 0
chr1:12206765|12206984 hsa-miR-3158-3p 1 0 0
chr1:12206765|12206984 hsa-miR-4746-3p 1 0 0
chr1:12206765|12206984 hsa-miR-1251-5p 1 0 0
chr1:12206765|12206984 hsa-miR-10400-5p 1 0 0
chr1:12206765|12206984 hsa-miR-4763-3p 1 0 0
chr1:12206765|12206984 hsa-miR-6787-5p 1 0 0
chr1:12206765|12206984 hsa-miR-5001-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6726-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6743-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6756-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6803-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6813-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6851-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6722-3p 1 0 0
chr1:12206765|12206984 hsa-miR-6779-5p 1 0 0
chr1:12206765|12206984 hsa-miR-3620-5p 1 0 0
chr1:12206765|12206984 hsa-miR-5196-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6836-5p 1 0 0
chr1:12206765|12206984 hsa-miR-1909-3p 1 0 0
chr1:12206765|12206984 hsa-miR-328-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6846-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6848-5p 1 0 0
chr1:12206765|12206984 hsa-miR-6889-5p 1 0 0
chr1:12206765|12206984 hsa-miR-4723-5p 1 0 0
chr1:12206765|12206984 hsa-miR-939-5p 1 0 0
chr1:12206765|12206984 hsa-miR-365a-5p 1 0 0
chr1:12206765|12206984 hsa-miR-365b-5p 1 0 0
chr1:12206765|12206984 hsa-miR-1914-3p 1 0 0
chr1:12206765|12206984 hsa-miR-6718-5p 1 0 0
chr1:12206765|12206984 hsa-miR-524-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:12206765|12206984
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MGDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLGSTEEKPLP
Nucleotide Sequence ATGGGAGACACAGATTCCAGCCCCTCGGAGTCCCCGAAGGACGAGCAGGTCCCCTTCTCCAAGGAGGAATGTGCCTTTCGGTCACAGCTGGAGACGCCAGAGACCCTGCTGGGGAGCACCGAAGAGAAGCCCCTGCCC
CircID chr1:12206765|12206984
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MTTAHSAPPKPAPQWETQIPAPRSPRRTSRSPSPRRNVPFGHSWRRQRPCWGAPKRSPC
Nucleotide Sequence CTGACCACAGCTCACAGTGCTCCTCCCAAGCCAGCTCCACAATGGGAGACACAGATTCCAGCCCCTCGGAGTCCCCGAAGGACGAGCAGGTCCCCTTCTCCAAGGAGGAATGTGCCTTTCGGTCACAGCTGGAGACGCCAGAGACCCTGCTGGGGAGCACCGAAGAGAAGCCCCTGC
CircID chr1:12206765|12206984
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MLVLRGLRGAGICVSHCGAGLGGAL
Nucleotide Sequence CTGCTCGTCCTTCGGGGACTCCGAGGGGCTGGAATCTGTGTCTCCCATTGTGGAGCTGGCTTGGGAGGAGCACTGTGA
CircID chr1:12206765|12206984
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MEKGTCSSFGDSEGLESVSPIVELAWEEHCELWSELLQTFTMQVTLTW
Nucleotide Sequence TTGGAGAAGGGGACCTGCTCGTCCTTCGGGGACTCCGAGGGGCTGGAATCTGTGTCTCCCATTGTGGAGCTGGCTTGGGAGGAGCACTGTGAGCTGTGGTCAGAGCTGCTACAGACGTTCACGATGCAGGTGACATTGACCTGG
CircID chr1:12206765|12206984
ORF Type ORF5
Protein Length 56
Nucleotide Length 171
Protein Sequence MASPAVTERHIPPWRRGPARPSGTPRGWNLCLPLWSWLGRSTVSCGQSCYRRSRCR
Nucleotide Sequence CTGGCGTCTCCAGCTGTGACCGAAAGGCACATTCCTCCTTGGAGAAGGGGACCTGCTCGTCCTTCGGGGACTCCGAGGGGCTGGAATCTGTGTCTCCCATTGTGGAGCTGGCTTGGGAGGAGCACTGTGAGCTGTGGTCAGAGCTGCTACAGACGTTCACGATGCAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab