CircRNA Information

General Information
circRNA Basic Information
CircID chr1:12509895|12510115
Strand +
CircType exon
Host Gene ENSG00000048707.12;
Algorism CIRI2;
Sequence TCCTATTTCATCCCCCTTTCTGGAACTCTCCCTGCTCCCTTCTCATCCTGGGGTTTCCATCCTGTGTCCCCTCGGGCTGTGGAGCTACGATGCCTGCCTGTGGCTTTATTAAAAAGAAAACAGTCCCGGGGCTTTGTTCTTGGTTGTTGCTGCCCAGGCAGGAGAGCACTTTTATGTGGATTTCTGATTTGTTGCAACAGTTCAATGGGACTTTTTTTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:12509895|12510115 hsa-miR-17-5p 0 0 1
chr1:12509895|12510115 hsa-miR-17-3p 0 0 1
chr1:12509895|12510115 hsa-miR-20a-5p 0 0 1
chr1:12509895|12510115 hsa-miR-20a-3p 0 0 1
chr1:12509895|12510115 hsa-miR-93-5p 0 0 1
chr1:12509895|12510115 hsa-miR-93-3p 0 0 1
chr1:12509895|12510115 hsa-miR-106a-5p 0 0 1
chr1:12509895|12510115 hsa-miR-106a-3p 0 0 1
chr1:12509895|12510115 hsa-miR-106b-5p 0 0 1
chr1:12509895|12510115 hsa-miR-106b-3p 0 0 1
chr1:12509895|12510115 hsa-miR-302a-5p 0 0 1
chr1:12509895|12510115 hsa-miR-302a-3p 0 0 1
chr1:12509895|12510115 hsa-miR-302b-5p 0 0 1
chr1:12509895|12510115 hsa-miR-302b-3p 0 0 1
chr1:12509895|12510115 hsa-miR-302c-5p 0 0 1
chr1:12509895|12510115 hsa-miR-302c-3p 0 0 1
chr1:12509895|12510115 hsa-miR-302d-5p 0 0 1
chr1:12509895|12510115 hsa-miR-302d-3p 0 0 1
chr1:12509895|12510115 hsa-miR-372-5p 0 0 1
chr1:12509895|12510115 hsa-miR-372-3p 0 0 1
chr1:12509895|12510115 hsa-miR-373-5p 0 0 1
chr1:12509895|12510115 hsa-miR-373-3p 0 0 1
chr1:12509895|12510115 hsa-miR-20b-5p 0 0 1
chr1:12509895|12510115 hsa-miR-20b-3p 0 0 1
chr1:12509895|12510115 hsa-miR-452-5p 0 0 1
chr1:12509895|12510115 hsa-miR-452-3p 0 0 1
chr1:12509895|12510115 hsa-miR-520e-5p 0 0 1
chr1:12509895|12510115 hsa-miR-520e-3p 0 0 1
chr1:12509895|12510115 hsa-miR-520b-5p 0 0 1
chr1:12509895|12510115 hsa-miR-520b-3p 0 0 1
chr1:12509895|12510115 hsa-miR-519d-5p 0 0 1
chr1:12509895|12510115 hsa-miR-519d-3p 0 0 1
chr1:12509895|12510115 hsa-miR-612 0 1 1
chr1:12509895|12510115 hsa-miR-661 0 0 1
chr1:12509895|12510115 hsa-miR-940 0 1 1
chr1:12509895|12510115 hsa-miR-1253 0 0 1
chr1:12509895|12510115 hsa-miR-1255a 0 1 1
chr1:12509895|12510115 hsa-miR-548n 0 0 1
chr1:12509895|12510115 hsa-miR-302e 0 1 1
chr1:12509895|12510115 hsa-miR-525-5p 0 0 1
chr1:12509895|12510115 hsa-miR-520a-5p 0 0 1
chr1:12509895|12510115 hsa-miR-520d-3p 0 1 1
chr1:12509895|12510115 hsa-miR-520a-3p 0 1 1
chr1:12509895|12510115 hsa-miR-520c-3p 0 1 1
chr1:12509895|12510115 hsa-miR-1255b 0 0 1
chr1:12509895|12510115 hsa-miR-1300 0 0 1
chr1:12509895|12510115 hsa-miR-1285 0 0 1
chr1:12509895|12510115 hsa-miR-1254 0 0 1
chr1:12509895|12510115 hsa-miR-658 1 0 0
chr1:12509895|12510115 hsa-miR-765 1 0 0
chr1:12509895|12510115 hsa-miR-3154 1 1 0
chr1:12509895|12510115 hsa-miR-4270 1 1 0
chr1:12509895|12510115 hsa-miR-4449 1 0 0
chr1:12509895|12510115 hsa-miR-2392 1 1 0
chr1:12509895|12510115 hsa-miR-4514 0 1 0
chr1:12509895|12510115 hsa-miR-4516 1 0 0
chr1:12509895|12510115 hsa-miR-4688 1 0 0
chr1:12509895|12510115 hsa-miR-4706 1 0 0
chr1:12509895|12510115 hsa-miR-4739 1 0 0
chr1:12509895|12510115 hsa-miR-5192 1 0 0
chr1:12509895|12510115 hsa-miR-6090 1 0 0
chr1:12509895|12510115 hsa-miR-6127 1 0 0
chr1:12509895|12510115 hsa-miR-6133 1 0 0
chr1:12509895|12510115 hsa-miR-7150 1 0 0
chr1:12509895|12510115 hsa-miR-12115 1 0 0
chr1:12509895|12510115 hsa-miR-6734-5p 1 0 0
chr1:12509895|12510115 hsa-miR-1247-3p 1 0 0
chr1:12509895|12510115 hsa-miR-6765-5p 1 0 0
chr1:12509895|12510115 hsa-miR-671-5p 1 0 0
chr1:12509895|12510115 hsa-miR-7106-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6894-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6510-5p 1 1 0
chr1:12509895|12510115 hsa-miR-6757-5p 1 0 0
chr1:12509895|12510115 hsa-miR-4695-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6845-3p 0 1 0
chr1:12509895|12510115 hsa-miR-6768-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6793-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6805-5p 1 0 0
chr1:12509895|12510115 hsa-miR-23a-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6798-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6760-5p 1 0 0
chr1:12509895|12510115 hsa-miR-1226-5p 1 0 0
chr1:12509895|12510115 hsa-miR-1229-5p 1 0 0
chr1:12509895|12510115 hsa-miR-4640-5p 1 0 0
chr1:12509895|12510115 hsa-miR-652-5p 1 0 0
chr1:12509895|12510115 hsa-miR-4713-3p 1 0 0
chr1:12509895|12510115 hsa-miR-149-3p 1 0 0
chr1:12509895|12510115 hsa-miR-3162-5p 1 0 0
chr1:12509895|12510115 hsa-miR-5010-5p 0 1 0
chr1:12509895|12510115 hsa-miR-4707-5p 1 0 0
chr1:12509895|12510115 hsa-miR-483-5p 1 0 0
chr1:12509895|12510115 hsa-miR-4717-5p 0 1 0
chr1:12509895|12510115 hsa-miR-5587-3p 0 1 0
chr1:12509895|12510115 hsa-miR-1207-5p 1 0 0
chr1:12509895|12510115 hsa-miR-4763-3p 1 0 0
chr1:12509895|12510115 hsa-miR-6865-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6870-5p 1 0 0
chr1:12509895|12510115 hsa-miR-1343-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6726-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6743-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6752-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6754-5p 1 0 0
chr1:12509895|12510115 hsa-miR-7110-5p 1 0 0
chr1:12509895|12510115 hsa-miR-1249-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6722-3p 1 0 0
chr1:12509895|12510115 hsa-miR-6774-5p 0 1 0
chr1:12509895|12510115 hsa-miR-6797-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6808-5p 1 1 0
chr1:12509895|12510115 hsa-miR-6879-5p 1 0 0
chr1:12509895|12510115 hsa-miR-5189-5p 0 1 0
chr1:12509895|12510115 hsa-miR-5196-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6780b-5p 1 0 0
chr1:12509895|12510115 hsa-miR-10526-3p 1 1 0
chr1:12509895|12510115 hsa-miR-4749-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6777-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6794-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6795-5p 1 1 0
chr1:12509895|12510115 hsa-miR-6848-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6858-5p 1 1 0
chr1:12509895|12510115 hsa-miR-6883-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6887-5p 1 1 0
chr1:12509895|12510115 hsa-miR-6889-5p 1 0 0
chr1:12509895|12510115 hsa-miR-3187-5p 0 1 0
chr1:12509895|12510115 hsa-miR-939-5p 1 0 0
chr1:12509895|12510115 hsa-miR-1285-3p 0 1 0
chr1:12509895|12510115 hsa-miR-4646-5p 1 0 0
chr1:12509895|12510115 hsa-miR-6891-5p 1 0 0
chr1:12509895|12510115 hsa-miR-4716-3p 0 1 0
chr1:12509895|12510115 hsa-miR-6791-5p 1 0 0
chr1:12509895|12510115 hsa-miR-526b-3p 0 1 0
chr1:12509895|12510115 hsa-miR-7-1-3p 0 1 0
chr1:12509895|12510115 hsa-miR-7-2-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:12509895|12510115
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MPVALLKRKQSRGFVLGCCCPGRRALLCGFLICCNSSMGLFF
Nucleotide Sequence CTGCCTGTGGCTTTATTAAAAAGAAAACAGTCCCGGGGCTTTGTTCTTGGTTGTTGCTGCCCAGGCAGGAGAGCACTTTTATGTGGATTTCTGATTTGTTGCAACAGTTCAATGGGACTTTTTTTT
CircID chr1:12509895|12510115
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MELSLLPSHPGVSILCPLGLWSYDACLWLY
Nucleotide Sequence CTGGAACTCTCCCTGCTCCCTTCTCATCCTGGGGTTTCCATCCTGTGTCCCCTCGGGCTGTGGAGCTACGATGCCTGCCTGTGGCTTTATTAA
CircID chr1:12509895|12510115
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MGFPSCVPSGCGATMPACGFIKKKTVPGLCSWLLLPRQESTFMWISDLLQQFNGTFFF
Nucleotide Sequence CTGGGGTTTCCATCCTGTGTCCCCTCGGGCTGTGGAGCTACGATGCCTGCCTGTGGCTTTATTAAAAAGAAAACAGTCCCGGGGCTTTGTTCTTGGTTGTTGCTGCCCAGGCAGGAGAGCACTTTTATGTGGATTTCTGATTTGTTGCAACAGTTCAATGGGACTTTTTTTTTC
CircID chr1:12509895|12510115
ORF Type ORF4
Protein Length 65
Nucleotide Length 198
Protein Sequence MLQQIRNPHKSALLPGQQQPRTKPRDCFLFNKATGRHRSSTARGDTGWKPQDEKGAGRVPERGMK
Nucleotide Sequence CTGTTGCAACAAATCAGAAATCCACATAAAAGTGCTCTCCTGCCTGGGCAGCAACAACCAAGAACAAAGCCCCGGGACTGTTTTCTTTTTAATAAAGCCACAGGCAGGCATCGTAGCTCCACAGCCCGAGGGGACACAGGATGGAAACCCCAGGATGAGAAGGGAGCAGGGAGAGTTCCAGAAAGGGGGATGAAATAG
CircID chr1:12509895|12510115
ORF Type ORF5
Protein Length 65
Nucleotide Length 198
Protein Sequence MNCCNKSEIHIKVLSCLGSNNQEQSPGTVFFLIKPQAGIVAPQPEGTQDGNPRMRREQGEFQKGG
Nucleotide Sequence TTGAACTGTTGCAACAAATCAGAAATCCACATAAAAGTGCTCTCCTGCCTGGGCAGCAACAACCAAGAACAAAGCCCCGGGACTGTTTTCTTTTTAATAAAGCCACAGGCAGGCATCGTAGCTCCACAGCCCGAGGGGACACAGGATGGAAACCCCAGGATGAGAAGGGAGCAGGGAGAGTTCCAGAAAGGGGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab