CircRNA Information

General Information
circRNA Basic Information
CircID chr1:1353030|1353367
Strand +
CircType exon
Host Gene ENSG00000162576.15;
Algorism CIRI2;
Sequence AACCAAAATCCCACTGATGCCCATCATGCCCTCAGACCCTTCTGGGCTCTGCCCGCTGGGGGCCTGAAGACATTCCTGGAGGACACTCCCATCAGAACCTGGCAGCCCCAAAACTGGGGTCAGCCTCAGGGCAGGAGTCCCACTCCTCCAGGGCTCTGCTCGTCGGGGGCTGGGAGATGTTCCTGGAGGAGGACACTCCCATCAGAACTTGGCAGCCTTGAAGTTGGGGTCAGCCTCGGCAGGAGTCCCACTCCTCCTGGGGTGCTGCCTGCCACCGAGAGCTCCCCCACCTGTACCACCATGTGGGACTCCAGGCACCATCTGTTCTCCCCAGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:1353030|1353367 hsa-miR-122-5p 0 0 1
chr1:1353030|1353367 hsa-miR-122-3p 0 0 1
chr1:1353030|1353367 hsa-miR-150-5p 0 0 1
chr1:1353030|1353367 hsa-miR-150-3p 0 0 1
chr1:1353030|1353367 hsa-miR-206 0 0 1
chr1:1353030|1353367 hsa-miR-552-5p 0 0 1
chr1:1353030|1353367 hsa-miR-552-3p 0 0 1
chr1:1353030|1353367 hsa-miR-613 0 0 1
chr1:1353030|1353367 hsa-miR-625-5p 0 0 1
chr1:1353030|1353367 hsa-miR-625-3p 0 0 1
chr1:1353030|1353367 hsa-miR-661 0 0 1
chr1:1353030|1353367 hsa-miR-659-5p 0 0 1
chr1:1353030|1353367 hsa-miR-659-3p 0 0 1
chr1:1353030|1353367 hsa-miR-765 0 1 1
chr1:1353030|1353367 hsa-miR-874-5p 0 0 1
chr1:1353030|1353367 hsa-miR-874-3p 0 0 1
chr1:1353030|1353367 hsa-miR-665 0 1 1
chr1:1353030|1353367 hsa-miR-873-5p 0 0 1
chr1:1353030|1353367 hsa-miR-873-3p 0 0 1
chr1:1353030|1353367 hsa-miR-920 1 1 1
chr1:1353030|1353367 hsa-miR-939-5p 0 0 1
chr1:1353030|1353367 hsa-miR-939-3p 0 0 1
chr1:1353030|1353367 hsa-miR-1182 0 1 1
chr1:1353030|1353367 hsa-miR-1290 0 0 1
chr1:1353030|1353367 hsa-miR-1275 1 0 1
chr1:1353030|1353367 hsa-miR-532-3p 0 0 1
chr1:1353030|1353367 hsa-miR-485-5p 0 1 1
chr1:1353030|1353367 hsa-miR-146b-3p 0 0 1
chr1:1353030|1353367 hsa-miR-1289 0 0 1
chr1:1353030|1353367 hsa-miR-361-3p 0 0 1
chr1:1353030|1353367 hsa-miR-188-3p 0 1 1
chr1:1353030|1353367 hsa-miR-876-3p 0 0 1
chr1:1353030|1353367 hsa-miR-1207-5p 0 0 1
chr1:1353030|1353367 hsa-miR-125a-5p 0 0 1
chr1:1353030|1353367 hsa-miR-1233 0 0 1
chr1:1353030|1353367 hsa-miR-323-5p 0 0 1
chr1:1353030|1353367 hsa-miR-125b 0 0 1
chr1:1353030|1353367 hsa-miR-550 0 0 1
chr1:1353030|1353367 hsa-miR-1 0 0 1
chr1:1353030|1353367 hsa-miR-1254 0 0 1
chr1:1353030|1353367 hsa-miR-608 1 0 0
chr1:1353030|1353367 hsa-miR-662 0 1 0
chr1:1353030|1353367 hsa-miR-1268a 1 0 0
chr1:1353030|1353367 hsa-miR-1976 0 1 0
chr1:1353030|1353367 hsa-miR-544b 0 1 0
chr1:1353030|1353367 hsa-miR-3154 0 1 0
chr1:1353030|1353367 hsa-miR-3175 0 1 0
chr1:1353030|1353367 hsa-miR-3181 0 1 0
chr1:1353030|1353367 hsa-miR-4298 1 0 0
chr1:1353030|1353367 hsa-miR-4253 1 0 0
chr1:1353030|1353367 hsa-miR-4254 0 1 0
chr1:1353030|1353367 hsa-miR-3615 0 1 0
chr1:1353030|1353367 hsa-miR-3659 0 1 0
chr1:1353030|1353367 hsa-miR-3665 1 0 0
chr1:1353030|1353367 hsa-miR-3909 1 0 0
chr1:1353030|1353367 hsa-miR-3929 0 1 0
chr1:1353030|1353367 hsa-miR-3945 1 0 0
chr1:1353030|1353367 hsa-miR-1268b 1 0 0
chr1:1353030|1353367 hsa-miR-4478 0 1 0
chr1:1353030|1353367 hsa-miR-4481 0 1 0
chr1:1353030|1353367 hsa-miR-4648 0 1 0
chr1:1353030|1353367 hsa-miR-4651 1 0 0
chr1:1353030|1353367 hsa-miR-4656 1 0 0
chr1:1353030|1353367 hsa-miR-5193 0 1 0
chr1:1353030|1353367 hsa-miR-5572 0 1 0
chr1:1353030|1353367 hsa-miR-5698 1 0 0
chr1:1353030|1353367 hsa-miR-6090 1 0 0
chr1:1353030|1353367 hsa-miR-7976 0 1 0
chr1:1353030|1353367 hsa-miR-7977 0 1 0
chr1:1353030|1353367 hsa-miR-8075 0 1 0
chr1:1353030|1353367 hsa-miR-8089 1 1 0
chr1:1353030|1353367 hsa-miR-12119 0 1 0
chr1:1353030|1353367 hsa-miR-370-3p 0 1 0
chr1:1353030|1353367 hsa-miR-4433b-3p 0 1 0
chr1:1353030|1353367 hsa-miR-18a-3p 0 1 0
chr1:1353030|1353367 hsa-miR-323a-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4726-3p 1 0 0
chr1:1353030|1353367 hsa-miR-7106-5p 0 1 0
chr1:1353030|1353367 hsa-miR-6825-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6880-5p 1 0 0
chr1:1353030|1353367 hsa-miR-7847-3p 1 0 0
chr1:1353030|1353367 hsa-miR-6746-5p 1 0 0
chr1:1353030|1353367 hsa-miR-3677-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4755-3p 1 1 0
chr1:1353030|1353367 hsa-miR-6840-5p 0 1 0
chr1:1353030|1353367 hsa-miR-433-3p 1 0 0
chr1:1353030|1353367 hsa-miR-6742-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6871-5p 0 1 0
chr1:1353030|1353367 hsa-miR-6732-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6782-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4713-5p 0 1 0
chr1:1353030|1353367 hsa-miR-1343-3p 1 0 0
chr1:1353030|1353367 hsa-miR-615-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6786-5p 1 0 0
chr1:1353030|1353367 hsa-miR-7109-5p 1 0 0
chr1:1353030|1353367 hsa-miR-1226-5p 1 1 0
chr1:1353030|1353367 hsa-miR-7113-3p 1 0 0
chr1:1353030|1353367 hsa-miR-1228-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4717-3p 0 1 0
chr1:1353030|1353367 hsa-miR-4787-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6824-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6802-5p 1 0 0
chr1:1353030|1353367 hsa-miR-194-3p 0 1 0
chr1:1353030|1353367 hsa-miR-5010-5p 1 0 0
chr1:1353030|1353367 hsa-miR-7112-5p 0 1 0
chr1:1353030|1353367 hsa-miR-7846-3p 0 1 0
chr1:1353030|1353367 hsa-miR-4707-5p 0 1 0
chr1:1353030|1353367 hsa-miR-345-5p 0 1 0
chr1:1353030|1353367 hsa-miR-508-5p 0 1 0
chr1:1353030|1353367 hsa-miR-3074-5p 0 1 0
chr1:1353030|1353367 hsa-miR-5089-5p 0 1 0
chr1:1353030|1353367 hsa-miR-4649-3p 0 1 0
chr1:1353030|1353367 hsa-miR-1296-3p 0 1 0
chr1:1353030|1353367 hsa-miR-1233-5p 1 0 0
chr1:1353030|1353367 hsa-miR-1273h-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6769b-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6778-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6787-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6865-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6870-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6775-5p 1 0 0
chr1:1353030|1353367 hsa-miR-1343-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6726-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6737-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6752-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6756-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6769a-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6803-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6813-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6819-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6842-5p 1 1 0
chr1:1353030|1353367 hsa-miR-10401-5p 1 0 0
chr1:1353030|1353367 hsa-miR-11181-3p 0 1 0
chr1:1353030|1353367 hsa-miR-6751-5p 1 0 0
chr1:1353030|1353367 hsa-miR-7111-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4728-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6836-5p 0 1 0
chr1:1353030|1353367 hsa-miR-6862-5p 1 1 0
chr1:1353030|1353367 hsa-miR-328-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4745-5p 1 1 0
chr1:1353030|1353367 hsa-miR-6735-5p 0 1 0
chr1:1353030|1353367 hsa-miR-6795-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6887-5p 1 1 0
chr1:1353030|1353367 hsa-miR-6885-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4758-5p 1 0 0
chr1:1353030|1353367 hsa-miR-365a-5p 0 1 0
chr1:1353030|1353367 hsa-miR-3198 0 1 0
chr1:1353030|1353367 hsa-miR-6731-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4665-5p 1 0 0
chr1:1353030|1353367 hsa-miR-4700-5p 0 1 0
chr1:1353030|1353367 hsa-miR-4667-5p 0 1 0
chr1:1353030|1353367 hsa-miR-6791-5p 1 1 0
chr1:1353030|1353367 hsa-miR-6792-3p 0 1 0
chr1:1353030|1353367 hsa-miR-3130-5p 1 0 0
chr1:1353030|1353367 hsa-miR-6884-5p 0 1 0
chr1:1353030|1353367 hsa-miR-4691-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:1353030|1353367
ORF Type ORF1
Protein Length 96
Nucleotide Length 288
Protein Sequence MPAGGLKTFLEDTPIRTWQPQNWGQPQGRSPTPPGLCSSGAGRCSWRRTLPSELGSLEVGVSLGRSPTPPGVLPATESSPTCTTMWDSRHHLFSPG
Nucleotide Sequence CTGCCCGCTGGGGGCCTGAAGACATTCCTGGAGGACACTCCCATCAGAACCTGGCAGCCCCAAAACTGGGGTCAGCCTCAGGGCAGGAGTCCCACTCCTCCAGGGCTCTGCTCGTCGGGGGCTGGGAGATGTTCCTGGAGGAGGACACTCCCATCAGAACTTGGCAGCCTTGAAGTTGGGGTCAGCCTCGGCAGGAGTCCCACTCCTCCTGGGGTGCTGCCTGCCACCGAGAGCTCCCCCACCTGTACCACCATGTGGGACTCCAGGCACCATCTGTTCTCCCCAGGG
CircID chr1:1353030|1353367
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MGDVPGGGHSHQNLAALKLGSASAGVPLLLGCCLPPRAPPPVPPCGTPGTICSPQG
Nucleotide Sequence CTGGGAGATGTTCCTGGAGGAGGACACTCCCATCAGAACTTGGCAGCCTTGAAGTTGGGGTCAGCCTCGGCAGGAGTCCCACTCCTCCTGGGGTGCTGCCTGCCACCGAGAGCTCCCCCACCTGTACCACCATGTGGGACTCCAGGCACCATCTGTTCTCCCCAGGGA
CircID chr1:1353030|1353367
ORF Type ORF3
Protein Length 59
Nucleotide Length 180
Protein Sequence MGSARWGPEDIPGGHSHQNLAAPKLGSASGQESHSSRALLVGGWEMFLEEDTPIRTWQP
Nucleotide Sequence CTGGGCTCTGCCCGCTGGGGGCCTGAAGACATTCCTGGAGGACACTCCCATCAGAACCTGGCAGCCCCAAAACTGGGGTCAGCCTCAGGGCAGGAGTCCCACTCCTCCAGGGCTCTGCTCGTCGGGGGCTGGGAGATGTTCCTGGAGGAGGACACTCCCATCAGAACTTGGCAGCCTTGA
CircID chr1:1353030|1353367
ORF Type ORF4
Protein Length 62
Nucleotide Length 189
Protein Sequence MESHMVVQVGELSVAGSTPGGVGLLPRLTPTSRLPSSDGSVLLQEHLPAPDEQSPGGVGLLP
Nucleotide Sequence CTGGAGTCCCACATGGTGGTACAGGTGGGGGAGCTCTCGGTGGCAGGCAGCACCCCAGGAGGAGTGGGACTCCTGCCGAGGCTGACCCCAACTTCAAGGCTGCCAAGTTCTGATGGGAGTGTCCTCCTCCAGGAACATCTCCCAGCCCCCGACGAGCAGAGCCCTGGAGGAGTGGGACTCCTGCCCTGA
CircID chr1:1353030|1353367
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MGRTDGAWSPTWWYRWGSSRWQAAPQEEWDSCRG
Nucleotide Sequence CTGGGGAGAACAGATGGTGCCTGGAGTCCCACATGGTGGTACAGGTGGGGGAGCTCTCGGTGGCAGGCAGCACCCCAGGAGGAGTGGGACTCCTGCCGAGGCTGA
CircID chr1:1353030|1353367
ORF Type ORF6
Protein Length 37
Nucleotide Length 114
Protein Sequence MMGVSSSRNISQPPTSRALEEWDSCPEADPSFGAARF
Nucleotide Sequence CTGATGGGAGTGTCCTCCTCCAGGAACATCTCCCAGCCCCCGACGAGCAGAGCCCTGGAGGAGTGGGACTCCTGCCCTGAGGCTGACCCCAGTTTTGGGGCTGCCAGGTTCTGA
CircID chr1:1353030|1353367
ORF Type ORF7
Protein Length 39
Nucleotide Length 120
Protein Sequence MVPGVPHGGTGGGALGGRQHPRRSGTPAEADPNFKAAKF
Nucleotide Sequence ATGGTGCCTGGAGTCCCACATGGTGGTACAGGTGGGGGAGCTCTCGGTGGCAGGCAGCACCCCAGGAGGAGTGGGACTCCTGCCGAGGCTGACCCCAACTTCAAGGCTGCCAAGTTCTGA
CircID chr1:1353030|1353367
ORF Type ORF8
Protein Length 43
Nucleotide Length 129
Protein Sequence MRLTPVLGLPGSDGSVLQECLQAPSGQSPEGSEGMMGISGILV
Nucleotide Sequence CTGAGGCTGACCCCAGTTTTGGGGCTGCCAGGTTCTGATGGGAGTGTCCTCCAGGAATGTCTTCAGGCCCCCAGCGGGCAGAGCCCAGAAGGGTCTGAGGGCATGATGGGCATCAGTGGGATTTTGGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab