CircRNA Information

General Information
circRNA Basic Information
CircID chr1:13749361|13749487
Strand +
CircType exon
Host Gene ENSG00000116731.21;
Algorism CIRI2;
Sequence CTTTCCGGCTCTTGGGGGAGCTCCGCTTGCTCCGGGCGCTGGCTCGCTCTTCCTCAATCGCAGCTGCTATCTCAGGGTTGTCTTCCCCATTGTACCAGACCAGGAGCTCCTCGCCCGGCGCGATTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:13749361|13749487 hsa-miR-15a-5p 0 0 1
chr1:13749361|13749487 hsa-miR-15a-3p 0 0 1
chr1:13749361|13749487 hsa-miR-15b-5p 0 0 1
chr1:13749361|13749487 hsa-miR-15b-3p 0 0 1
chr1:13749361|13749487 hsa-miR-195-5p 0 0 1
chr1:13749361|13749487 hsa-miR-195-3p 0 0 1
chr1:13749361|13749487 hsa-miR-335-5p 0 0 1
chr1:13749361|13749487 hsa-miR-335-3p 0 0 1
chr1:13749361|13749487 hsa-miR-424-5p 0 0 1
chr1:13749361|13749487 hsa-miR-424-3p 0 0 1
chr1:13749361|13749487 hsa-miR-497-5p 0 0 1
chr1:13749361|13749487 hsa-miR-497-3p 0 0 1
chr1:13749361|13749487 hsa-miR-503-5p 0 0 1
chr1:13749361|13749487 hsa-miR-503-3p 0 0 1
chr1:13749361|13749487 hsa-miR-646 1 1 1
chr1:13749361|13749487 hsa-miR-708-5p 0 0 1
chr1:13749361|13749487 hsa-miR-708-3p 0 0 1
chr1:13749361|13749487 hsa-miR-1203 0 1 1
chr1:13749361|13749487 hsa-miR-1224-5p 0 0 1
chr1:13749361|13749487 hsa-miR-361-3p 0 0 1
chr1:13749361|13749487 hsa-miR-28-5p 0 1 1
chr1:13749361|13749487 hsa-miR-125a-5p 0 0 1
chr1:13749361|13749487 hsa-miR-151-5p 0 0 1
chr1:13749361|13749487 hsa-miR-125b 0 0 1
chr1:13749361|13749487 hsa-miR-16 0 0 1
chr1:13749361|13749487 hsa-miR-7 0 0 1
chr1:13749361|13749487 hsa-miR-638 1 0 0
chr1:13749361|13749487 hsa-miR-639 1 0 0
chr1:13749361|13749487 hsa-miR-151b 0 1 0
chr1:13749361|13749487 hsa-miR-1202 1 0 0
chr1:13749361|13749487 hsa-miR-2110 1 1 0
chr1:13749361|13749487 hsa-miR-3195 0 1 0
chr1:13749361|13749487 hsa-miR-4271 0 1 0
chr1:13749361|13749487 hsa-miR-3665 1 0 0
chr1:13749361|13749487 hsa-miR-3960 1 0 0
chr1:13749361|13749487 hsa-miR-4739 1 0 0
chr1:13749361|13749487 hsa-miR-4751 1 0 0
chr1:13749361|13749487 hsa-miR-5047 1 1 0
chr1:13749361|13749487 hsa-miR-5698 1 0 0
chr1:13749361|13749487 hsa-miR-6077 0 1 0
chr1:13749361|13749487 hsa-miR-8085 1 0 0
chr1:13749361|13749487 hsa-miR-150-3p 0 1 0
chr1:13749361|13749487 hsa-miR-6880-5p 1 0 0
chr1:13749361|13749487 hsa-miR-7847-3p 1 0 0
chr1:13749361|13749487 hsa-miR-1301-3p 1 0 0
chr1:13749361|13749487 hsa-miR-6858-3p 1 1 0
chr1:13749361|13749487 hsa-miR-1229-5p 1 0 0
chr1:13749361|13749487 hsa-let-7d-5p 1 0 0
chr1:13749361|13749487 hsa-let-7b-5p 1 0 0
chr1:13749361|13749487 hsa-miR-7846-3p 0 1 0
chr1:13749361|13749487 hsa-let-7i-5p 1 0 0
chr1:13749361|13749487 hsa-miR-4746-3p 1 0 0
chr1:13749361|13749487 hsa-miR-98-5p 1 0 0
chr1:13749361|13749487 hsa-miR-6737-5p 1 0 0
chr1:13749361|13749487 hsa-miR-6819-5p 1 0 0
chr1:13749361|13749487 hsa-miR-7111-5p 1 0 0
chr1:13749361|13749487 hsa-miR-6780b-5p 1 1 0
chr1:13749361|13749487 hsa-miR-10396a-5p 1 0 0
chr1:13749361|13749487 hsa-miR-4632-5p 1 0 0
chr1:13749361|13749487 hsa-miR-4649-5p 1 1 0
chr1:13749361|13749487 hsa-miR-4725-3p 1 1 0
chr1:13749361|13749487 hsa-miR-4726-5p 1 0 0
chr1:13749361|13749487 hsa-miR-4745-5p 1 0 0
chr1:13749361|13749487 hsa-miR-6729-5p 1 1 0
chr1:13749361|13749487 hsa-miR-6858-5p 0 1 0
chr1:13749361|13749487 hsa-miR-4723-5p 1 0 0
chr1:13749361|13749487 hsa-miR-6731-5p 1 0 0
chr1:13749361|13749487 hsa-miR-10398-3p 0 1 0
chr1:13749361|13749487 hsa-miR-6791-5p 1 0 0
chr1:13749361|13749487 hsa-miR-151a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:13749361|13749487
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MGELRLLRALARSSSIAAAISGLSSPLYQTRSSSPGAI
Nucleotide Sequence TTGGGGGAGCTCCGCTTGCTCCGGGCGCTGGCTCGCTCTTCCTCAATCGCAGCTGCTATCTCAGGGTTGTCTTCCCCATTGTACCAGACCAGGAGCTCCTCGCCCGGCGCGATT
CircID chr1:13749361|13749487
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MVWYNGEDNPEIAAAIEEERASARSKRSSPKSRK
Nucleotide Sequence CTGGTCTGGTACAATGGGGAAGACAACCCTGAGATAGCAGCTGCGATTGAGGAAGAGCGAGCCAGCGCCCGGAGCAAGCGGAGCTCCCCCAAGAGCCGGAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab