CircRNA Information

General Information
circRNA Basic Information
CircID chr1:145977831|145978096
Strand +
CircType exon
Host Gene ENSG00000121851.12;
Algorism CIRI2;
Sequence GAAACAATACAGAAACTAGAGACCCTGGAGAAGAAGGAAGAAGAAGTAACTTCAGAGGAGGATGAGGAGAAAGAAGAAGAAGAAGAGAAGGAAGAGGAGGAAGAAGAAGAGTATGATGAAGAAGAACATGAAGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:145977831|145978096 hsa-miR-204-5p 0 0 1
chr1:145977831|145978096 hsa-miR-204-3p 0 0 1
chr1:145977831|145978096 hsa-miR-211-5p 0 0 1
chr1:145977831|145978096 hsa-miR-211-3p 0 0 1
chr1:145977831|145978096 hsa-miR-328-5p 0 0 1
chr1:145977831|145978096 hsa-miR-328-3p 0 0 1
chr1:145977831|145978096 hsa-miR-504-5p 0 0 1
chr1:145977831|145978096 hsa-miR-504-3p 0 0 1
chr1:145977831|145978096 hsa-miR-595 0 1 1
chr1:145977831|145978096 hsa-miR-623 0 0 1
chr1:145977831|145978096 hsa-miR-648 0 1 1
chr1:145977831|145978096 hsa-miR-1237-5p 0 0 1
chr1:145977831|145978096 hsa-miR-1237-3p 0 0 1
chr1:145977831|145978096 hsa-miR-1200 0 1 1
chr1:145977831|145978096 hsa-miR-1253 0 0 1
chr1:145977831|145978096 hsa-miR-1255a 1 1 1
chr1:145977831|145978096 hsa-miR-1272 0 0 1
chr1:145977831|145978096 hsa-miR-1252-5p 0 0 1
chr1:145977831|145978096 hsa-miR-1252-3p 0 0 1
chr1:145977831|145978096 hsa-miR-1322 0 0 1
chr1:145977831|145978096 hsa-miR-146a-3p 0 1 1
chr1:145977831|145978096 hsa-miR-1225-3p 0 0 1
chr1:145977831|145978096 hsa-miR-769-5p 1 1 1
chr1:145977831|145978096 hsa-miR-337-3p 0 0 1
chr1:145977831|145978096 hsa-miR-1233 0 0 1
chr1:145977831|145978096 hsa-miR-550 0 0 1
chr1:145977831|145978096 hsa-miR-642 0 0 1
chr1:145977831|145978096 hsa-miR-1255b 0 0 1
chr1:145977831|145978096 hsa-miR-153 0 0 1
chr1:145977831|145978096 hsa-miR-664 0 0 1
chr1:145977831|145978096 hsa-miR-765 1 1 0
chr1:145977831|145978096 hsa-miR-1183 1 0 0
chr1:145977831|145978096 hsa-miR-3125 1 1 0
chr1:145977831|145978096 hsa-miR-3132 1 0 0
chr1:145977831|145978096 hsa-miR-3154 1 0 0
chr1:145977831|145978096 hsa-miR-4308 0 1 0
chr1:145977831|145978096 hsa-miR-4271 1 1 0
chr1:145977831|145978096 hsa-miR-3916 1 0 0
chr1:145977831|145978096 hsa-miR-4428 1 0 0
chr1:145977831|145978096 hsa-miR-4468 1 0 0
chr1:145977831|145978096 hsa-miR-4476 1 0 0
chr1:145977831|145978096 hsa-miR-2392 1 0 0
chr1:145977831|145978096 hsa-miR-4510 1 1 0
chr1:145977831|145978096 hsa-miR-4516 1 0 0
chr1:145977831|145978096 hsa-miR-4533 1 0 0
chr1:145977831|145978096 hsa-miR-4534 1 0 0
chr1:145977831|145978096 hsa-miR-4641 0 1 0
chr1:145977831|145978096 hsa-miR-4644 1 1 0
chr1:145977831|145978096 hsa-miR-4656 1 0 0
chr1:145977831|145978096 hsa-miR-4658 1 0 0
chr1:145977831|145978096 hsa-miR-4682 0 1 0
chr1:145977831|145978096 hsa-miR-4689 1 1 0
chr1:145977831|145978096 hsa-miR-4706 1 0 0
chr1:145977831|145978096 hsa-miR-4710 0 1 0
chr1:145977831|145978096 hsa-miR-4739 1 0 0
chr1:145977831|145978096 hsa-miR-4784 1 0 0
chr1:145977831|145978096 hsa-miR-5703 1 1 0
chr1:145977831|145978096 hsa-miR-5739 1 0 0
chr1:145977831|145978096 hsa-miR-5787 1 0 0
chr1:145977831|145978096 hsa-miR-6088 1 0 0
chr1:145977831|145978096 hsa-miR-6124 1 0 0
chr1:145977831|145978096 hsa-miR-6127 1 0 0
chr1:145977831|145978096 hsa-miR-6129 1 0 0
chr1:145977831|145978096 hsa-miR-6130 1 0 0
chr1:145977831|145978096 hsa-miR-6133 1 0 0
chr1:145977831|145978096 hsa-miR-6165 1 0 0
chr1:145977831|145978096 hsa-miR-6745 1 0 0
chr1:145977831|145978096 hsa-miR-7515 1 0 0
chr1:145977831|145978096 hsa-miR-8060 1 0 0
chr1:145977831|145978096 hsa-miR-8085 1 0 0
chr1:145977831|145978096 hsa-miR-8089 1 0 0
chr1:145977831|145978096 hsa-miR-12114 1 0 0
chr1:145977831|145978096 hsa-miR-12118 1 0 0
chr1:145977831|145978096 hsa-miR-12120 1 0 0
chr1:145977831|145978096 hsa-miR-135a-3p 1 0 0
chr1:145977831|145978096 hsa-miR-6734-5p 1 1 0
chr1:145977831|145978096 hsa-miR-6809-5p 1 0 0
chr1:145977831|145978096 hsa-miR-3150a-3p 1 0 0
chr1:145977831|145978096 hsa-miR-7106-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6825-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6894-5p 1 1 0
chr1:145977831|145978096 hsa-miR-1233-3p 1 1 0
chr1:145977831|145978096 hsa-miR-766-5p 0 1 0
chr1:145977831|145978096 hsa-miR-6833-5p 1 0 0
chr1:145977831|145978096 hsa-miR-5187-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6515-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6757-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6873-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6880-5p 1 0 0
chr1:145977831|145978096 hsa-miR-7847-3p 1 1 0
chr1:145977831|145978096 hsa-miR-4695-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6746-5p 1 0 0
chr1:145977831|145978096 hsa-miR-4709-3p 1 0 0
chr1:145977831|145978096 hsa-miR-7154-3p 1 0 0
chr1:145977831|145978096 hsa-miR-197-5p 1 0 0
chr1:145977831|145978096 hsa-miR-874-3p 1 0 0
chr1:145977831|145978096 hsa-miR-3605-5p 1 1 0
chr1:145977831|145978096 hsa-miR-6768-5p 1 0 0
chr1:145977831|145978096 hsa-miR-3180-3p 1 0 0
chr1:145977831|145978096 hsa-miR-6798-5p 1 0 0
chr1:145977831|145978096 hsa-miR-942-5p 0 1 0
chr1:145977831|145978096 hsa-miR-6760-5p 1 1 0
chr1:145977831|145978096 hsa-miR-6881-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6782-5p 1 0 0
chr1:145977831|145978096 hsa-miR-3667-5p 0 1 0
chr1:145977831|145978096 hsa-miR-3150b-3p 1 0 0
chr1:145977831|145978096 hsa-miR-5008-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6835-5p 1 0 0
chr1:145977831|145978096 hsa-miR-4738-3p 1 1 0
chr1:145977831|145978096 hsa-miR-3691-5p 1 0 0
chr1:145977831|145978096 hsa-miR-4764-5p 1 0 0
chr1:145977831|145978096 hsa-miR-877-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6847-5p 1 1 0
chr1:145977831|145978096 hsa-miR-3202 1 0 0
chr1:145977831|145978096 hsa-miR-6830-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6824-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6878-5p 1 1 0
chr1:145977831|145978096 hsa-miR-5010-5p 1 0 0
chr1:145977831|145978096 hsa-miR-423-5p 1 0 0
chr1:145977831|145978096 hsa-miR-4724-5p 0 1 0
chr1:145977831|145978096 hsa-miR-660-3p 0 1 0
chr1:145977831|145978096 hsa-miR-483-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6779-3p 1 1 0
chr1:145977831|145978096 hsa-miR-6731-3p 0 1 0
chr1:145977831|145978096 hsa-miR-4763-3p 1 0 0
chr1:145977831|145978096 hsa-miR-6769b-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6812-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6870-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6851-5p 1 0 0
chr1:145977831|145978096 hsa-miR-11181-3p 1 1 0
chr1:145977831|145978096 hsa-miR-1249-5p 1 1 0
chr1:145977831|145978096 hsa-miR-6763-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6788-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6797-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6875-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6879-5p 1 0 0
chr1:145977831|145978096 hsa-miR-7111-5p 1 0 0
chr1:145977831|145978096 hsa-miR-4755-5p 0 1 0
chr1:145977831|145978096 hsa-miR-5196-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6780b-5p 1 0 0
chr1:145977831|145978096 hsa-miR-10526-3p 1 0 0
chr1:145977831|145978096 hsa-miR-4649-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6735-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6738-5p 1 0 0
chr1:145977831|145978096 hsa-miR-675-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6794-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6846-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6858-5p 1 1 0
chr1:145977831|145978096 hsa-miR-4436b-3p 1 0 0
chr1:145977831|145978096 hsa-miR-6831-5p 1 0 0
chr1:145977831|145978096 hsa-miR-4769-5p 1 0 0
chr1:145977831|145978096 hsa-miR-3198 1 0 0
chr1:145977831|145978096 hsa-miR-6731-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6739-5p 1 1 0
chr1:145977831|145978096 hsa-miR-6758-5p 1 1 0
chr1:145977831|145978096 hsa-miR-1199-5p 0 1 0
chr1:145977831|145978096 hsa-miR-3173-3p 1 0 0
chr1:145977831|145978096 hsa-miR-3679-5p 1 0 0
chr1:145977831|145978096 hsa-miR-4747-5p 1 0 0
chr1:145977831|145978096 hsa-miR-6891-5p 1 1 0
chr1:145977831|145978096 hsa-miR-4716-3p 1 0 0
chr1:145977831|145978096 hsa-miR-4667-5p 1 1 0
chr1:145977831|145978096 hsa-miR-6791-5p 1 0 0
chr1:145977831|145978096 hsa-miR-1255b-5p 1 1 0
chr1:145977831|145978096 hsa-miR-548ao-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:145977831|145978096
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MFFFIILFFFLLFLLFFFFFLLILL
Nucleotide Sequence ATGTTCTTCTTCATCATACTCTTCTTCTTCCTCCTCTTCCTTCTCTTCTTCTTCTTCTTTCTCCTCATCCTCCTCTGA
CircID chr1:145977831|145978096
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MEKKEEEVTSEEDEEKEEEEEKEEEEEEEYDEEEHEE
Nucleotide Sequence CTGGAGAAGAAGGAAGAAGAAGTAACTTCAGAGGAGGATGAGGAGAAAGAAGAAGAAGAAGAGAAGGAAGAGGAGGAAGAAGAAGAGTATGATGAAGAAGAACATGAAGAG
CircID chr1:145977831|145978096
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MGQERGNGSRAQEVSMHTSSSPLVSVLF
Nucleotide Sequence ATGGGCCAAGAGAGAGGGAATGGATCCAGGGCTCAGGAGGTCTCTATGCACACTTCCTCCTCACCTCTAGTTTCTGTATTGTTT
CircID chr1:145977831|145978096
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MKLLLLPSSPGSHVGMNRNRNSGSVHRREKLRHTWAKREGMDPGLRRSLCTLPPHL
Nucleotide Sequence CTGAAGTTACTTCTTCTTCCTTCTTCTCCAGGGTCTCATGTGGGGATGAATAGGAATAGAAACTCAGGTTCAGTTCACAGAAGGGAAAAATTGAGGCACACATGGGCCAAGAGAGAGGGAATGGATCCAGGGCTCAGGAGGTCTCTATGCACACTTCCTCCTCACCTCTAG
CircID chr1:145977831|145978096
ORF Type ORF4
Protein Length 70
Nucleotide Length 210
Protein Sequence MDPFPLSWPMCASIFPFCELNLSFYSYSSPHETLEKKEEEVTSEEDEEKEEEEEKEEEEEEEYDEEEHEE
Nucleotide Sequence CTGGATCCATTCCCTCTCTCTTGGCCCATGTGTGCCTCAATTTTTCCCTTCTGTGAACTGAACCTGAGTTTCTATTCCTATTCATCCCCACATGAGACCCTGGAGAAGAAGGAAGAAGAAGTAACTTCAGAGGAGGATGAGGAGAAAGAAGAAGAAGAAGAGAAGGAAGAGGAGGAAGAAGAAGAGTATGATGAAGAAGAACATGAAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:145977831|145978096 U2AF2 2 3 0
chr1:145977831|145978096 MOV10 0 9 0
chr1:145977831|145978096 ELAVL1 0 5 1
chr1:145977831|145978096 FAM120A 0 0 1
chr1:145977831|145978096 KHDRBS1 1 0 0
chr1:145977831|145978096 PRPF8 1 2 1
chr1:145977831|145978096 UPF1 0 3 0
chr1:145977831|145978096 SRSF10 0 1 0
chr1:145977831|145978096 TAF15 3 4 0
chr1:145977831|145978096 FMR1 6 3 1
chr1:145977831|145978096 CPSF6 0 2 2
chr1:145977831|145978096 TIA1 1 0 0
chr1:145977831|145978096 TROVE2 0 1 0
chr1:145977831|145978096 FUS 0 1 0
chr1:145977831|145978096 DGCR8 0 2 0
chr1:145977831|145978096 SRSF7 0 1 0
chr1:145977831|145978096 SRSF1 0 7 4
chr1:145977831|145978096 NOP58 1 1 2
chr1:145977831|145978096 NOP56 1 1 0
chr1:145977831|145978096 SRSF9 0 1 1
chr1:145977831|145978096 DDX54 4 11 5
chr1:145977831|145978096 LSM11 1 3 0
chr1:145977831|145978096 RBM10 2 1 0
chr1:145977831|145978096 HNRNPA2B1 2 0 1
chr1:145977831|145978096 PTBP1 1 4 2
chr1:145977831|145978096 TRA2A 2 6 4
chr1:145977831|145978096 ZNF184 1 2 2
chr1:145977831|145978096 HNRNPA1 0 1 0
chr1:145977831|145978096 DDX3X 2 1 0
chr1:145977831|145978096 LARP4B 0 4 0
chr1:145977831|145978096 MSI2 0 0 1
chr1:145977831|145978096 ACIN1 1 1 0
chr1:145977831|145978096 LIN28B 3 6 0
chr1:145977831|145978096 LIN28A 0 1 0
chr1:145977831|145978096 FXR1 0 1 0
chr1:145977831|145978096 FXR2 0 0 1
chr1:145977831|145978096 IGF2BP1 0 3 0
chr1:145977831|145978096 IGF2BP3 0 2 1
chr1:145977831|145978096 IGF2BP2 1 4 3
chr1:145977831|145978096 NPM1 0 0 1
chr1:145977831|145978096 TARDBP 1 3 2
chr1:145977831|145978096 BUD13 1 1 1
chr1:145977831|145978096 RBFOX2 1 1 1
chr1:145977831|145978096 CNBP 2 5 0
chr1:145977831|145978096 EIF4G2 4 2 2
chr1:145977831|145978096 DDX42 0 0 1
chr1:145977831|145978096 CSTF2T 0 2 2
chr1:145977831|145978096 SAFB2 0 3 2
chr1:145977831|145978096 TARBP2 0 0 2
chr1:145977831|145978096 RBM22 1 0 0
chr1:145977831|145978096 EIF4A3 5 4 0
chr1:145977831|145978096 FBL 0 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab