CircRNA Information

General Information
circRNA Basic Information
CircID chr1:145994016|145994320
Strand -
CircType exon
Host Gene ENSG00000265972.4;
Algorism CIRI2;
Sequence CTCAGTATAAGTCGGTGGTGGCATGAACTTGAACTCAGGGGCATACATAAAGATAGGGCTGTCTTGAGAGCCATCCATGTCATCTAGCAGAGGAGTGGTTGGGCTCTCCAATCGGTGATCTTCAGGAATGACATCCATATAGCAGGGAGGAGCTAGAAAAGAAAATATGGCCACATAAGAATCCTGCCCAAGAAATGCTGGACCATCACAATTTTACAAACCCAGGTAGACCAGAAACAAAGAAAAGACATTAGGTCTGGCTCACCTTCTGGGGTATCAGGGATGTTCAGATCTACCCAACTCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:145994016|145994320 hsa-miR-26b-5p 0 0 1
chr1:145994016|145994320 hsa-miR-26b-3p 0 0 1
chr1:145994016|145994320 hsa-miR-185-5p 0 0 1
chr1:145994016|145994320 hsa-miR-185-3p 0 0 1
chr1:145994016|145994320 hsa-miR-511-5p 0 0 1
chr1:145994016|145994320 hsa-miR-511-3p 0 0 1
chr1:145994016|145994320 hsa-miR-571 0 1 1
chr1:145994016|145994320 hsa-miR-578 0 0 1
chr1:145994016|145994320 hsa-miR-601 0 0 1
chr1:145994016|145994320 hsa-miR-616-5p 0 0 1
chr1:145994016|145994320 hsa-miR-616-3p 0 0 1
chr1:145994016|145994320 hsa-miR-619-5p 0 0 1
chr1:145994016|145994320 hsa-miR-619-3p 0 0 1
chr1:145994016|145994320 hsa-miR-620 0 0 1
chr1:145994016|145994320 hsa-miR-629-5p 0 0 1
chr1:145994016|145994320 hsa-miR-629-3p 0 0 1
chr1:145994016|145994320 hsa-miR-635 0 0 1
chr1:145994016|145994320 hsa-miR-760 0 0 1
chr1:145994016|145994320 hsa-miR-1200 0 0 1
chr1:145994016|145994320 hsa-miR-663b 1 0 1
chr1:145994016|145994320 hsa-miR-1206 0 0 1
chr1:145994016|145994320 hsa-miR-1297 0 0 1
chr1:145994016|145994320 hsa-miR-1246 0 0 1
chr1:145994016|145994320 hsa-miR-1270 0 0 1
chr1:145994016|145994320 hsa-miR-513c-5p 0 0 1
chr1:145994016|145994320 hsa-miR-513c-3p 0 0 1
chr1:145994016|145994320 hsa-miR-299-3p 0 0 1
chr1:145994016|145994320 hsa-miR-1225-5p 0 0 1
chr1:145994016|145994320 hsa-miR-490-5p 0 0 1
chr1:145994016|145994320 hsa-miR-338-3p 0 0 1
chr1:145994016|145994320 hsa-miR-125a-5p 0 0 1
chr1:145994016|145994320 hsa-miR-483-3p 0 1 1
chr1:145994016|145994320 hsa-miR-220b 0 0 1
chr1:145994016|145994320 hsa-miR-125b 0 0 1
chr1:145994016|145994320 hsa-miR-26a 0 0 1
chr1:145994016|145994320 hsa-miR-219-1-3p 0 0 1
chr1:145994016|145994320 hsa-miR-612 1 0 0
chr1:145994016|145994320 hsa-miR-3132 1 0 0
chr1:145994016|145994320 hsa-miR-3147 1 0 0
chr1:145994016|145994320 hsa-miR-4307 0 1 0
chr1:145994016|145994320 hsa-miR-4268 0 1 0
chr1:145994016|145994320 hsa-miR-5087 0 1 0
chr1:145994016|145994320 hsa-miR-6860 1 0 0
chr1:145994016|145994320 hsa-miR-12131 0 1 0
chr1:145994016|145994320 hsa-miR-29b-1-5p 1 0 0
chr1:145994016|145994320 hsa-miR-432-3p 0 1 0
chr1:145994016|145994320 hsa-miR-15a-3p 1 0 0
chr1:145994016|145994320 hsa-miR-6861-5p 1 0 0
chr1:145994016|145994320 hsa-miR-210-5p 1 0 0
chr1:145994016|145994320 hsa-miR-219a-1-3p 1 0 0
chr1:145994016|145994320 hsa-miR-7851-3p 0 1 0
chr1:145994016|145994320 hsa-miR-1225-3p 1 0 0
chr1:145994016|145994320 hsa-miR-6807-5p 0 1 0
chr1:145994016|145994320 hsa-miR-3677-5p 1 0 0
chr1:145994016|145994320 hsa-miR-6721-5p 0 1 0
chr1:145994016|145994320 hsa-miR-3189-5p 1 0 0
chr1:145994016|145994320 hsa-miR-7108-5p 1 0 0
chr1:145994016|145994320 hsa-miR-3663-5p 1 1 0
chr1:145994016|145994320 hsa-miR-1229-5p 1 1 0
chr1:145994016|145994320 hsa-miR-1228-5p 1 0 0
chr1:145994016|145994320 hsa-miR-296-3p 1 0 0
chr1:145994016|145994320 hsa-miR-6856-3p 0 1 0
chr1:145994016|145994320 hsa-miR-502-5p 1 1 0
chr1:145994016|145994320 hsa-miR-454-5p 0 1 0
chr1:145994016|145994320 hsa-miR-584-5p 1 0 0
chr1:145994016|145994320 hsa-miR-675-3p 1 0 0
chr1:145994016|145994320 hsa-miR-6808-3p 1 0 0
chr1:145994016|145994320 hsa-miR-4802-3p 0 1 0
chr1:145994016|145994320 hsa-miR-6816-5p 1 0 0
chr1:145994016|145994320 hsa-miR-6756-5p 1 0 0
chr1:145994016|145994320 hsa-miR-6722-3p 1 0 0
chr1:145994016|145994320 hsa-miR-6774-5p 1 1 0
chr1:145994016|145994320 hsa-miR-4726-5p 1 0 0
chr1:145994016|145994320 hsa-miR-3187-5p 1 0 0
chr1:145994016|145994320 hsa-miR-6855-5p 1 0 0
chr1:145994016|145994320 hsa-miR-6801-3p 1 0 0
chr1:145994016|145994320 hsa-miR-514b-5p 0 1 0
chr1:145994016|145994320 hsa-miR-7157-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:145994016|145994320
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MPKKCWTITILQTQVDQKQRKDIRSGSPSGVSGMFRSTQL
Nucleotide Sequence CTGCCCAAGAAATGCTGGACCATCACAATTTTACAAACCCAGGTAGACCAGAAACAAAGAAAAGACATTAGGTCTGGCTCACCTTCTGGGGTATCAGGGATGTTCAGATCTACCCAACTC

CircID chr1:145994016|145994320
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MSWVDLNIPDTPEGEPDLMSFLCFWSTWVCKIVMVQHFLGRILMWPYFLF
Nucleotide Sequence ATGAGTTGGGTAGATCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTAATGTCTTTTCTTTGTTTCTGGTCTACCTGGGTTTGTAAAATTGTGATGGTCCAGCATTTCTTGGGCAGGATTCTTATGTGGCCATATTTTCTTTTCTAG

CircID chr1:145994016|145994320
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MTWMALKTALSLCMPLSSSSCHHRLIL
Nucleotide Sequence ATGACATGGATGGCTCTCAAGACAGCCCTATCTTTATGTATGCCCCTGAGTTCAAGTTCATGCCACCACCGACTTATACTG

CircID chr1:145994016|145994320
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MDVIPEDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTE
Nucleotide Sequence ATGGATGTCATTCCTGAAGATCACCGATTGGAGAGCCCAACCACTCCTCTGCTAGATGACATGGATGGCTCTCAAGACAGCCCTATCTTTATGTATGCCCCTGAGTTCAAGTTCATGCCACCACCGACTTATACTGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites